/examples/data/ensembl_pax_sub.fasta
Unknown | 385 lines | 385 code | 0 blank | 0 comment | 0 complexity | a85b058bef53d25e37d645e781f1bb35 MD5 | raw file
1>ENSOGAP00000013678 2------------------------------------------------------------ 3------------------------------------------------------------ 4------------------------------------------------------------ 5------------------------------------------------------------ 6------------------------------------------------------------ 7------------------------------------------------------------ 8------------------------------------------------------------ 9------------------------------------------------------------ 10-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR 11------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK 12PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC 13------------------------------------------------------------ 14------------------------------------------------------------ 15DNDTVPS------------------------VSSINRIIRTKV----------------- 16----------------------QQPFH--------------------------------- 17------------------------------------------------------------ 18---------------------------------------------PTPDG-AGTGVTAPG 19--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN 20GILGI------PRSNGE-------------KRKRDEVEVYTDPAHIRGGGGLHLVWTLRX 21X-XXXXX----------------------------XXXXXXXXXX--------------- 22-------------------------X------XXXXXXXXXX-XXXXX------------ 23--------------XXXXXX-XXXXXXXXXXXXXX-------XXXXXX--GNE-YS-L-- 24PALTP-G-------LDEVKSSLSAS-TNPELG---------------------------- 25-------------------------------------------------------NNVS- 26-GTQTYP--------------VVT------------------------------------ 27---------------------------------------------------GRDMASTT- 28--LPG--------------------------------------------------YPPHV 29PP---------------------------------------------------------- 30--------------------------------------------------------TGQG 31S----YPTST-----L-----------AGMVP---------------------------- 32------------------GX---------------------------------XXXXNPY 33SHP------QYTAYNE-AWRFSNP------------ALL-------------------MP 34PPGAPPL-----------------------------PLLPLP----MTATS--YRGDH-- 35----IKLQADSFGLHIVPV--------------- 36>ENSPTRP00000005013 37----------------------MDMHCKADP---FSAM----HP---------------- 38------------------------------------------------------------ 39------------------------------------------------------------ 40------------------------------------------------------------ 41------------------------------------------------------------ 42------------------------------------------------------------ 43------------------------------------------------------------ 44------------------------------------------------------------ 45-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR 46------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK 47PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC 48------------------------------------------------------------ 49------------------------------------------------------------ 50DNDTVPS------------------------VSSINRIIRTKV----------------- 51----------------------QQPFH--------------------------------- 52------------------------------------------------------------ 53---------------------------------------------PTPDG-AGTGVTAPG 54--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN 55GILGI------PRSNGE-------------KRKRDEVEVYTDPAHIRGGGGLHLVWTLRD 56V-SEGSV----------------------------PNGDSQSGVD--------------- 57-------------------------S------LRKHLRADTF-TQQQL------------ 58--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L-- 59PALTP-G-------LDEVKSSLSAS-TNPELG---------------------------- 60-------------------------------------------------------SNVS- 61-GTQTYP--------------VVT------------------------------------ 62---------------------------------------------------GRDMASTT- 63--LPG--------------------------------------------------YPPHV 64PP---------------------------------------------------------- 65--------------------------------------------------------TGQG 66S----YPTST-----L-----------AGMVP---------------------------- 67------------------EA---------------------------------AVGPSSS 68--------------------------------------L-------------------MS 69KPGRKLA-----------------------------EVPPCV----QPTGA--SSPATRT 70ATPSTRPTTRLGDSATPPY--------------- 71>ENSGGOP00000014550 72----------------------MAGPCCVWGVVFFSCL----SP--A------------- 73------------------------------------------------------------ 74------------------------------------------------------------ 75------------------------------------------------------------ 76------------------------------------------------------------ 77------------------------------------------------------------ 78------------------------------------------------------------ 79------------------------------------------------------------ 80-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR 81------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK 82PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC 83------------------------------------------------------------ 84------------------------------------------------------------ 85DNDTVPS------------------------VSSINRIIRTKV----------------- 86----------------------QQPFH--------------------------------- 87------------------------------------------------------------ 88---------------------------------------------PTPDG-AGTGVTAPG 89--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN 90GILGI------PRSNGE-------------KRKRDEVEVYTDPAHIRGGGGLHLVWTLRD 91V-SEGSV----------------------------PNGDSQSGVD--------------- 92-------------------------S------LRKHLRADTF-TQQQL------------ 93--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L-- 94PALTP-G-------LDEVKSSLSAS-TNPELG---------------------------- 95-------------------------------------------------------SNVS- 96-GTQTYP--------------VVT------------------------------------ 97---------------------------------------------------GRDMASTT- 98--LPG--------------------------------------------------YPPHV 99PP---------------------------------------------------------- 100--------------------------------------------------------TGQG 101S----YPTST-----L-----------AGMVP---------------------------- 102------------------EA---------------------------------AVGPSSS 103--------------------------------------L-------------------MS 104KPGRKLA-----------------------------EVPPCV----QPTVC--HGPSTAP 105THPSLCP--------------------------- 106>ENSMMUP00000012017 107----------------------MDMHCKADP---FSAM----HP---------------- 108------------------------------------------------------------ 109------------------------------------------------------------ 110------------------------------------------------------------ 111------------------------------------------------------------ 112------------------------------------------------------------ 113------------------------------------------------------------ 114------------------------------------------------------------ 115-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR 116------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK 117PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC 118------------------------------------------------------------ 119------------------------------------------------------------ 120DNDTVPS------------------------VSSINRIIRTKV----------------- 121----------------------QQPFH--------------------------------- 122------------------------------------------------------------ 123---------------------------------------------PTPDG-AGTGVTAPG 124--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN 125GILGI------PRSNGE-------------KRKRDEVEVYTDPAHIRGGGGLHLVWTLRD 126V-SEGSV----------------------------PNGDSQSGVD--------------- 127-------------------------S------LRKHLRADTF-TQQQL------------ 128--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L-- 129PALTP-G-------LDEVKSSLSAS-TNPELG---------------------------- 130-------------------------------------------------------SNVS- 131-GTQTYP--------------VVT------------------------------------ 132---------------------------------------------------GRDMASTT- 133--LPG--------------------------------------------------YPPHV 134PP---------------------------------------------------------- 135--------------------------------------------------------TGQG 136S----YPTST-----L-----------AGMVP---------------------------- 137------------------GS---------------------------------EFSGNPY 138SHP------QYTAYNE-AWRFSNP------------ALL-------------------MP 139PPGAPPL-----------------------------PLLPL------------PMTATSY 140RGDHIKLQADSFGLHIVPV--------------- 141>ENSMICP00000001240 142----------------------MDMHCKADP---FSAM----HP---------------- 143------------------------------------------------------------ 144------------------------------------------------------------ 145------------------------------------------------------------ 146------------------------------------------------------------ 147------------------------------------------------------------ 148------------------------------------------------------------ 149------------------------------------------------------------ 150-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR 151------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK 152PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC 153------------------------------------------------------------ 154------------------------------------------------------------ 155DNDTVPS------------------------VSSINRIIRTKV----------------- 156----------------------QQPFH--------------------------------- 157------------------------------------------------------------ 158---------------------------------------------PTPDG-AGTGVTAPG 159--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN 160GILGI------PRSNGE-------------KRKRDEGEVYTDPVHIRGGGGLHLVWTLRX 161X-XXXXV----------------------------PNGDSQSGVD--------------- 162-------------------------S------LRKHLRADTF-TQQQL------------ 163--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L-- 164PALTP-G-------LDEVKSSLSAS-TNPELG---------------------------- 165-------------------------------------------------------SNVS- 166-GTQTYP--------------VVT------------------------------------ 167---------------------------------------------------GRDMASTT- 168--LPG--------------------------------------------------YPPHV 169PP---------------------------------------------------------- 170--------------------------------------------------------TGQG 171S----YPTST-----L-----------AGMVP---------------------------- 172------------------GS---------------------------------EFSGNPY 173SHP------QYTAYNE-AWRFSNP------------ALL--------------------- 174------------------------------------------------------------ 175---------------------------------- 176>ENSSTOP00000010388 177------------------------------------------------------------ 178------------------------------------------------------------ 179------------------------------------------------------------ 180------------------------------------------------------------ 181------------------------------------------------------------ 182------------------------------------------------------------ 183------------------------------------------------------------ 184------------------------------------------------------------ 185-GHGGV-QLGGVXXXXXXX--------------XXXXXXXXXXXXXX-XXXXXXXXXXXX 186------------------XXXGCVSKILG--------RYYETGSIKPGVI------GGSK 187PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC 188------------------------------------------------------------ 189------------------------------------------------------------ 190DNDTVPS------------------------VSSINXXXXXXX----------------- 191----------------------XXXXX--------------------------------- 192------------------------------------------------------------ 193---------------------------------------------XXXXX-XXXXXXXXX 194--XXXXXXXXXXXXX----------------XXX-------------XXXXXX---XXXX 195XXXXX------XXXXXX-------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 196X-XXXXX----------------------------XXXXXXXXXX--------------- 197-------------------------X------XXXXXXXXXX-XXXXX------------ 198--------------XXXXXX-XXXXXXXXXXXXXX-------XXXXXX--GNE-YS-L-- 199PALTP-G-------LDEVKSSLSAS-TNPELG---------------------------- 200-------------------------------------------------------SNVS- 201-GTQTYP--------------VVT------------------------------------ 202---------------------------------------------------GRDMASTT- 203--LPG--------------------------------------------------YPPHV 204PP---------------------------------------------------------- 205--------------------------------------------------------TGQG 206S----YPTST-----L-----------AGMVP---------------------------- 207------------------GS---------------------------------EFSGNPY 208SHP------QYTAYNE-AWRFSNP------------ALL--------------------- 209------------------------------------------------------------ 210---------------------------------- 211>ENSCJAP00000032077 212----------------------MDMHCKADP---FSAM----HP---------------- 213------------------------------------------------------------ 214------------------------------------------------------------ 215------------------------------------------------------------ 216------------------------------------------------------------ 217------------------------------------------------------------ 218------------------------------------------------------------ 219------------------------------------------------------------ 220-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR 221------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK 222PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC 223------------------------------------------------------------ 224------------------------------------------------------------ 225DNDTVPS------------------------VSSINRIIRTKV----------------- 226----------------------QQPFH--------------------------------- 227------------------------------------------------------------ 228---------------------------------------------PTPDG-AGTGVTAPG 229--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN 230GILGI------PRSNGE-------------KRKRDEVEVYTDPAHIRGGGGLHLVWTLRD 231V-SEGSV----------------------------PNGDSQSGVD--------------- 232-------------------------S------LRKHLRADTF-TQQQL------------ 233--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L-- 234PALTP-G-------LDEVKSSLSAS-TNPELG---------------------------- 235-------------------------------------------------------SNVS- 236-GTQTYP--------------VVT------------------------------------ 237---------------------------------------------------GRDMASTT- 238--LPG--------------------------------------------------YPPHV 239PP---------------------------------------------------------- 240--------------------------------------------------------TGQG 241S----YPTST-----L-----------AGMVP---------------------------- 242------------------GS---------------------------------EFSGNPY 243SHP------QYTAYNE-AWRFSNP------------ALL-------------------SS 244PYYYSAA-----------------------------PRGSAP----AAAAA--AYDRH-- 245---------------------------------- 246>ENSDORP00000005799 247----------------------MDMHCKADP---FSAM----HP---------------- 248------------------------------------------------------------ 249------------------------------------------------------------ 250------------------------------------------------------------ 251------------------------------------------------------------ 252------------------------------------------------------------ 253------------------------------------------------------------ 254------------------------------------------------------------ 255-EHGGVNQLGG-FVNGRP---------------PDVV-QRIVELAQQ-GVRPCDISRQLR 256------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK 257PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC 258------------------------------------------------------------ 259------------------------------------------------------------ 260DNDTVPS------------------------VSSINRIIRTKV----------------- 261----------------------QQPFH--------------------------------- 262------------------------------------------------------------ 263---------------------------------------------PTPDG-AGTGVTAPG 264--HTIVPSNASPPVS----------------SAS-------------NDPEGS---YSIN 265GXXXX------XXXXXX-------------XXXXXXXEVYTDPAHIRGGRGLQLVWTLRD 266V-SEGSV----------------------------PNGDSQSGVD--------------- 267-------------------------S------LRKHLRADTF-TQQQL------------ 268--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L-- 269PALTP-G-------LDEVKSSLSAS-TNPELG---------------------------- 270-------------------------------------------------------SNVS- 271-GTQTYP--------------VVT------------------------------------ 272---------------------------------------------------GRDMASTT- 273--LPG--------------------------------------------------YPPHV 274PP---------------------------------------------------------- 275--------------------------------------------------------TGQG 276S----YPTST-----L-----------AGMVP---------------------------- 277-----------------------------------------------------GAAVGPS 278SS-----------------HMSNP------------GFT-------------------E- 279----------------------------------------VR----MTXXX--XXXXXXX 280XXXXXXXXXXXXXXXXXHY--------------- 281>ENSP00000359319 282----------------------MDMHCKADP---FSAM----HP---------------- 283------------------------------------------------------------ 284------------------------------------------------------------ 285------------------------------------------------------------ 286------------------------------------------------------------ 287------------------------------------------------------------ 288------------------------------------------------------------ 289------------------------------------------------------------ 290-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR 291------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK 292PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC 293------------------------------------------------------------ 294------------------------------------------------------------ 295DNDTVPS------------------------VSSINRIIRTKV----------------- 296----------------------QQPFH--------------------------------- 297------------------------------------------------------------ 298---------------------------------------------PTPDG-AGTGVTAPG 299--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN 300GILGI------PRSNGE-------------KRKRDEVEVYTDPAHIRGGGGLHLVWTLRD 301V-SEGSV----------------------------PNGDSQSGVD--------------- 302-------------------------S------LRKHLRADTF-TQQQL------------ 303--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L-- 304PALTP-G-------LDEVKSSLSAS-TNPELG---------------------------- 305-------------------------------------------------------SNVS- 306-GTQTYP--------------VVT------------------------------------ 307---------------------------------------------------GRDMASTT- 308--LPG--------------------------------------------------YPPHV 309PP---------------------------------------------------------- 310--------------------------------------------------------TGQG 311S----YPTST-----L-----------AGMVP---------------------------- 312------------------EA---------------------------------AVGPSSS 313--------------------------------------L-------------------MS 314KPGRKLA-----------------------------EVPPCV----QPTGA--SSPATRT 315ATPSTRPTTRLGDSATPPY--------------- 316>ENSCPOP00000000844 317----------------------MDMHCKADP---FSAM----HP---------------- 318------------------------------------------------------------ 319------------------------------------------------------------ 320------------------------------------------------------------ 321------------------------------------------------------------ 322------------------------------------------------------------ 323------------------------------------------------------------ 324------------------------------------------------------------ 325-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR 326------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK 327PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC 328------------------------------------------------------------ 329------------------------------------------------------------ 330DNDTVPS------------------------VSSINRIIRTKV----------------- 331----------------------QQPFH--------------------------------- 332------------------------------------------------------------ 333---------------------------------------------PTPDG-TGTGVSAPG 334--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN 335GILGI------PRSNGE-------------KRKRDE-----------------------D 336V-SEGSV----------------------------PNGDSQSGVD--------------- 337-------------------------S------LRKHLRADTF-TQQQL------------ 338--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L-- 339PTLTP-G-------LDEVKSGLSAS-TNPELG---------------------------- 340-------------------------------------------------------SNVS- 341-GTQTYP--------------VVT------------------------------------ 342---------------------------------------------------GRDMASTT- 343--LPG--------------------------------------------------YPPHV 344PP---------------------------------------------------------- 345--------------------------------------------------------TGQG 346S----YPTST-----L-----------AGMVP---------------------------- 347------------------VP---------------------------------RGCNGP- 348---------------------SSS------------LMN-------------------NS 349DRKLAEV-----------------------------PFTLHR----GPSPA--PTPQEYW 350PPPVTPPTTRPGNSATPAL--------------- 351>ENSPPYP00000002986 352----------------------MDMHCKADP---FSAM----HP---------------- 353------------------------------------------------------------ 354------------------------------------------------------------ 355------------------------------------------------------------ 356------------------------------------------------------------ 357------------------------------------------------------------ 358------------------------------------------------------------ 359------------------------------------------------------------ 360-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR 361------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK 362PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC 363------------------------------------------------------------ 364------------------------------------------------------------ 365DNDTVPS------------------------VSSINRIIRTKV----------------- 366----------------------QQPFH--------------------------------- 367------------------------------------------------------------ 368---------------------------------------------PTPDG-AGTGVTAPG 369--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN 370GILGI------PRSNGE-------------KRKRDEVEVYTDPAHIRGGGGLHLVWTLRD 371V-SEGSV----------------------------PNGDSQSGVD--------------- 372-------------------------S------LRKHLRADTF-TQQQL------------ 373--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L-- 374PALTP-G-------LDEVKSSLSAS-TNPELG---------------------------- 375-------------------------------------------------------SNVS- 376-GTQTYP--------------VVT------------------------------------ 377---------------------------------------------------GRDMASTT- 378--LPG--------------------------------------------------YPPHV 379PP---------------------------------------------------------- 380--------------------------------------------------------TGQG 381S----YPTST-----L-----------AGMVP---------------------------- 382------------------EA---------------------------------AVGPSSS 383--------------------------------------L-------------------MS 384KPGRKLA-----------------------------EVPPCV----QPT----------- 385----------------------------------