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/examples/data/ensembl_pax_sub.fasta

http://github.com/sbotond/phylosim
Unknown | 385 lines | 385 code | 0 blank | 0 comment | 0 complexity | a85b058bef53d25e37d645e781f1bb35 MD5 | raw file
  1>ENSOGAP00000013678
  2------------------------------------------------------------
  3------------------------------------------------------------
  4------------------------------------------------------------
  5------------------------------------------------------------
  6------------------------------------------------------------
  7------------------------------------------------------------
  8------------------------------------------------------------
  9------------------------------------------------------------
 10-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR
 11------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK
 12PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC
 13------------------------------------------------------------
 14------------------------------------------------------------
 15DNDTVPS------------------------VSSINRIIRTKV-----------------
 16----------------------QQPFH---------------------------------
 17------------------------------------------------------------
 18---------------------------------------------PTPDG-AGTGVTAPG
 19--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN
 20GILGI------PRSNGE-------------KRKRDEVEVYTDPAHIRGGGGLHLVWTLRX
 21X-XXXXX----------------------------XXXXXXXXXX---------------
 22-------------------------X------XXXXXXXXXX-XXXXX------------
 23--------------XXXXXX-XXXXXXXXXXXXXX-------XXXXXX--GNE-YS-L--
 24PALTP-G-------LDEVKSSLSAS-TNPELG----------------------------
 25-------------------------------------------------------NNVS-
 26-GTQTYP--------------VVT------------------------------------
 27---------------------------------------------------GRDMASTT-
 28--LPG--------------------------------------------------YPPHV
 29PP----------------------------------------------------------
 30--------------------------------------------------------TGQG
 31S----YPTST-----L-----------AGMVP----------------------------
 32------------------GX---------------------------------XXXXNPY
 33SHP------QYTAYNE-AWRFSNP------------ALL-------------------MP
 34PPGAPPL-----------------------------PLLPLP----MTATS--YRGDH--
 35----IKLQADSFGLHIVPV---------------
 36>ENSPTRP00000005013
 37----------------------MDMHCKADP---FSAM----HP----------------
 38------------------------------------------------------------
 39------------------------------------------------------------
 40------------------------------------------------------------
 41------------------------------------------------------------
 42------------------------------------------------------------
 43------------------------------------------------------------
 44------------------------------------------------------------
 45-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR
 46------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK
 47PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC
 48------------------------------------------------------------
 49------------------------------------------------------------
 50DNDTVPS------------------------VSSINRIIRTKV-----------------
 51----------------------QQPFH---------------------------------
 52------------------------------------------------------------
 53---------------------------------------------PTPDG-AGTGVTAPG
 54--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN
 55GILGI------PRSNGE-------------KRKRDEVEVYTDPAHIRGGGGLHLVWTLRD
 56V-SEGSV----------------------------PNGDSQSGVD---------------
 57-------------------------S------LRKHLRADTF-TQQQL------------
 58--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L--
 59PALTP-G-------LDEVKSSLSAS-TNPELG----------------------------
 60-------------------------------------------------------SNVS-
 61-GTQTYP--------------VVT------------------------------------
 62---------------------------------------------------GRDMASTT-
 63--LPG--------------------------------------------------YPPHV
 64PP----------------------------------------------------------
 65--------------------------------------------------------TGQG
 66S----YPTST-----L-----------AGMVP----------------------------
 67------------------EA---------------------------------AVGPSSS
 68--------------------------------------L-------------------MS
 69KPGRKLA-----------------------------EVPPCV----QPTGA--SSPATRT
 70ATPSTRPTTRLGDSATPPY---------------
 71>ENSGGOP00000014550
 72----------------------MAGPCCVWGVVFFSCL----SP--A-------------
 73------------------------------------------------------------
 74------------------------------------------------------------
 75------------------------------------------------------------
 76------------------------------------------------------------
 77------------------------------------------------------------
 78------------------------------------------------------------
 79------------------------------------------------------------
 80-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR
 81------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK
 82PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC
 83------------------------------------------------------------
 84------------------------------------------------------------
 85DNDTVPS------------------------VSSINRIIRTKV-----------------
 86----------------------QQPFH---------------------------------
 87------------------------------------------------------------
 88---------------------------------------------PTPDG-AGTGVTAPG
 89--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN
 90GILGI------PRSNGE-------------KRKRDEVEVYTDPAHIRGGGGLHLVWTLRD
 91V-SEGSV----------------------------PNGDSQSGVD---------------
 92-------------------------S------LRKHLRADTF-TQQQL------------
 93--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L--
 94PALTP-G-------LDEVKSSLSAS-TNPELG----------------------------
 95-------------------------------------------------------SNVS-
 96-GTQTYP--------------VVT------------------------------------
 97---------------------------------------------------GRDMASTT-
 98--LPG--------------------------------------------------YPPHV
 99PP----------------------------------------------------------
100--------------------------------------------------------TGQG
101S----YPTST-----L-----------AGMVP----------------------------
102------------------EA---------------------------------AVGPSSS
103--------------------------------------L-------------------MS
104KPGRKLA-----------------------------EVPPCV----QPTVC--HGPSTAP
105THPSLCP---------------------------
106>ENSMMUP00000012017
107----------------------MDMHCKADP---FSAM----HP----------------
108------------------------------------------------------------
109------------------------------------------------------------
110------------------------------------------------------------
111------------------------------------------------------------
112------------------------------------------------------------
113------------------------------------------------------------
114------------------------------------------------------------
115-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR
116------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK
117PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC
118------------------------------------------------------------
119------------------------------------------------------------
120DNDTVPS------------------------VSSINRIIRTKV-----------------
121----------------------QQPFH---------------------------------
122------------------------------------------------------------
123---------------------------------------------PTPDG-AGTGVTAPG
124--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN
125GILGI------PRSNGE-------------KRKRDEVEVYTDPAHIRGGGGLHLVWTLRD
126V-SEGSV----------------------------PNGDSQSGVD---------------
127-------------------------S------LRKHLRADTF-TQQQL------------
128--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L--
129PALTP-G-------LDEVKSSLSAS-TNPELG----------------------------
130-------------------------------------------------------SNVS-
131-GTQTYP--------------VVT------------------------------------
132---------------------------------------------------GRDMASTT-
133--LPG--------------------------------------------------YPPHV
134PP----------------------------------------------------------
135--------------------------------------------------------TGQG
136S----YPTST-----L-----------AGMVP----------------------------
137------------------GS---------------------------------EFSGNPY
138SHP------QYTAYNE-AWRFSNP------------ALL-------------------MP
139PPGAPPL-----------------------------PLLPL------------PMTATSY
140RGDHIKLQADSFGLHIVPV---------------
141>ENSMICP00000001240
142----------------------MDMHCKADP---FSAM----HP----------------
143------------------------------------------------------------
144------------------------------------------------------------
145------------------------------------------------------------
146------------------------------------------------------------
147------------------------------------------------------------
148------------------------------------------------------------
149------------------------------------------------------------
150-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR
151------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK
152PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC
153------------------------------------------------------------
154------------------------------------------------------------
155DNDTVPS------------------------VSSINRIIRTKV-----------------
156----------------------QQPFH---------------------------------
157------------------------------------------------------------
158---------------------------------------------PTPDG-AGTGVTAPG
159--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN
160GILGI------PRSNGE-------------KRKRDEGEVYTDPVHIRGGGGLHLVWTLRX
161X-XXXXV----------------------------PNGDSQSGVD---------------
162-------------------------S------LRKHLRADTF-TQQQL------------
163--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L--
164PALTP-G-------LDEVKSSLSAS-TNPELG----------------------------
165-------------------------------------------------------SNVS-
166-GTQTYP--------------VVT------------------------------------
167---------------------------------------------------GRDMASTT-
168--LPG--------------------------------------------------YPPHV
169PP----------------------------------------------------------
170--------------------------------------------------------TGQG
171S----YPTST-----L-----------AGMVP----------------------------
172------------------GS---------------------------------EFSGNPY
173SHP------QYTAYNE-AWRFSNP------------ALL---------------------
174------------------------------------------------------------
175----------------------------------
176>ENSSTOP00000010388
177------------------------------------------------------------
178------------------------------------------------------------
179------------------------------------------------------------
180------------------------------------------------------------
181------------------------------------------------------------
182------------------------------------------------------------
183------------------------------------------------------------
184------------------------------------------------------------
185-GHGGV-QLGGVXXXXXXX--------------XXXXXXXXXXXXXX-XXXXXXXXXXXX
186------------------XXXGCVSKILG--------RYYETGSIKPGVI------GGSK
187PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC
188------------------------------------------------------------
189------------------------------------------------------------
190DNDTVPS------------------------VSSINXXXXXXX-----------------
191----------------------XXXXX---------------------------------
192------------------------------------------------------------
193---------------------------------------------XXXXX-XXXXXXXXX
194--XXXXXXXXXXXXX----------------XXX-------------XXXXXX---XXXX
195XXXXX------XXXXXX-------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
196X-XXXXX----------------------------XXXXXXXXXX---------------
197-------------------------X------XXXXXXXXXX-XXXXX------------
198--------------XXXXXX-XXXXXXXXXXXXXX-------XXXXXX--GNE-YS-L--
199PALTP-G-------LDEVKSSLSAS-TNPELG----------------------------
200-------------------------------------------------------SNVS-
201-GTQTYP--------------VVT------------------------------------
202---------------------------------------------------GRDMASTT-
203--LPG--------------------------------------------------YPPHV
204PP----------------------------------------------------------
205--------------------------------------------------------TGQG
206S----YPTST-----L-----------AGMVP----------------------------
207------------------GS---------------------------------EFSGNPY
208SHP------QYTAYNE-AWRFSNP------------ALL---------------------
209------------------------------------------------------------
210----------------------------------
211>ENSCJAP00000032077
212----------------------MDMHCKADP---FSAM----HP----------------
213------------------------------------------------------------
214------------------------------------------------------------
215------------------------------------------------------------
216------------------------------------------------------------
217------------------------------------------------------------
218------------------------------------------------------------
219------------------------------------------------------------
220-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR
221------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK
222PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC
223------------------------------------------------------------
224------------------------------------------------------------
225DNDTVPS------------------------VSSINRIIRTKV-----------------
226----------------------QQPFH---------------------------------
227------------------------------------------------------------
228---------------------------------------------PTPDG-AGTGVTAPG
229--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN
230GILGI------PRSNGE-------------KRKRDEVEVYTDPAHIRGGGGLHLVWTLRD
231V-SEGSV----------------------------PNGDSQSGVD---------------
232-------------------------S------LRKHLRADTF-TQQQL------------
233--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L--
234PALTP-G-------LDEVKSSLSAS-TNPELG----------------------------
235-------------------------------------------------------SNVS-
236-GTQTYP--------------VVT------------------------------------
237---------------------------------------------------GRDMASTT-
238--LPG--------------------------------------------------YPPHV
239PP----------------------------------------------------------
240--------------------------------------------------------TGQG
241S----YPTST-----L-----------AGMVP----------------------------
242------------------GS---------------------------------EFSGNPY
243SHP------QYTAYNE-AWRFSNP------------ALL-------------------SS
244PYYYSAA-----------------------------PRGSAP----AAAAA--AYDRH--
245----------------------------------
246>ENSDORP00000005799
247----------------------MDMHCKADP---FSAM----HP----------------
248------------------------------------------------------------
249------------------------------------------------------------
250------------------------------------------------------------
251------------------------------------------------------------
252------------------------------------------------------------
253------------------------------------------------------------
254------------------------------------------------------------
255-EHGGVNQLGG-FVNGRP---------------PDVV-QRIVELAQQ-GVRPCDISRQLR
256------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK
257PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC
258------------------------------------------------------------
259------------------------------------------------------------
260DNDTVPS------------------------VSSINRIIRTKV-----------------
261----------------------QQPFH---------------------------------
262------------------------------------------------------------
263---------------------------------------------PTPDG-AGTGVTAPG
264--HTIVPSNASPPVS----------------SAS-------------NDPEGS---YSIN
265GXXXX------XXXXXX-------------XXXXXXXEVYTDPAHIRGGRGLQLVWTLRD
266V-SEGSV----------------------------PNGDSQSGVD---------------
267-------------------------S------LRKHLRADTF-TQQQL------------
268--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L--
269PALTP-G-------LDEVKSSLSAS-TNPELG----------------------------
270-------------------------------------------------------SNVS-
271-GTQTYP--------------VVT------------------------------------
272---------------------------------------------------GRDMASTT-
273--LPG--------------------------------------------------YPPHV
274PP----------------------------------------------------------
275--------------------------------------------------------TGQG
276S----YPTST-----L-----------AGMVP----------------------------
277-----------------------------------------------------GAAVGPS
278SS-----------------HMSNP------------GFT-------------------E-
279----------------------------------------VR----MTXXX--XXXXXXX
280XXXXXXXXXXXXXXXXXHY---------------
281>ENSP00000359319
282----------------------MDMHCKADP---FSAM----HP----------------
283------------------------------------------------------------
284------------------------------------------------------------
285------------------------------------------------------------
286------------------------------------------------------------
287------------------------------------------------------------
288------------------------------------------------------------
289------------------------------------------------------------
290-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR
291------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK
292PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC
293------------------------------------------------------------
294------------------------------------------------------------
295DNDTVPS------------------------VSSINRIIRTKV-----------------
296----------------------QQPFH---------------------------------
297------------------------------------------------------------
298---------------------------------------------PTPDG-AGTGVTAPG
299--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN
300GILGI------PRSNGE-------------KRKRDEVEVYTDPAHIRGGGGLHLVWTLRD
301V-SEGSV----------------------------PNGDSQSGVD---------------
302-------------------------S------LRKHLRADTF-TQQQL------------
303--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L--
304PALTP-G-------LDEVKSSLSAS-TNPELG----------------------------
305-------------------------------------------------------SNVS-
306-GTQTYP--------------VVT------------------------------------
307---------------------------------------------------GRDMASTT-
308--LPG--------------------------------------------------YPPHV
309PP----------------------------------------------------------
310--------------------------------------------------------TGQG
311S----YPTST-----L-----------AGMVP----------------------------
312------------------EA---------------------------------AVGPSSS
313--------------------------------------L-------------------MS
314KPGRKLA-----------------------------EVPPCV----QPTGA--SSPATRT
315ATPSTRPTTRLGDSATPPY---------------
316>ENSCPOP00000000844
317----------------------MDMHCKADP---FSAM----HP----------------
318------------------------------------------------------------
319------------------------------------------------------------
320------------------------------------------------------------
321------------------------------------------------------------
322------------------------------------------------------------
323------------------------------------------------------------
324------------------------------------------------------------
325-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR
326------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK
327PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC
328------------------------------------------------------------
329------------------------------------------------------------
330DNDTVPS------------------------VSSINRIIRTKV-----------------
331----------------------QQPFH---------------------------------
332------------------------------------------------------------
333---------------------------------------------PTPDG-TGTGVSAPG
334--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN
335GILGI------PRSNGE-------------KRKRDE-----------------------D
336V-SEGSV----------------------------PNGDSQSGVD---------------
337-------------------------S------LRKHLRADTF-TQQQL------------
338--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L--
339PTLTP-G-------LDEVKSGLSAS-TNPELG----------------------------
340-------------------------------------------------------SNVS-
341-GTQTYP--------------VVT------------------------------------
342---------------------------------------------------GRDMASTT-
343--LPG--------------------------------------------------YPPHV
344PP----------------------------------------------------------
345--------------------------------------------------------TGQG
346S----YPTST-----L-----------AGMVP----------------------------
347------------------VP---------------------------------RGCNGP-
348---------------------SSS------------LMN-------------------NS
349DRKLAEV-----------------------------PFTLHR----GPSPA--PTPQEYW
350PPPVTPPTTRPGNSATPAL---------------
351>ENSPPYP00000002986
352----------------------MDMHCKADP---FSAM----HP----------------
353------------------------------------------------------------
354------------------------------------------------------------
355------------------------------------------------------------
356------------------------------------------------------------
357------------------------------------------------------------
358------------------------------------------------------------
359------------------------------------------------------------
360-GHGGVNQLGGVFVNGRPL--------------PDVVRQRIVELAHQ-GVRPCDISRQLR
361------------------VSHGCVSKILG--------RYYETGSIKPGVI------GGSK
362PK-VATPKVVDKIAEYKRQNPTMFAWEI----------------------RDRLLAEGIC
363------------------------------------------------------------
364------------------------------------------------------------
365DNDTVPS------------------------VSSINRIIRTKV-----------------
366----------------------QQPFH---------------------------------
367------------------------------------------------------------
368---------------------------------------------PTPDG-AGTGVTAPG
369--HTIVPSTASPPVS----------------SAS-------------NDPVGS---YSIN
370GILGI------PRSNGE-------------KRKRDEVEVYTDPAHIRGGGGLHLVWTLRD
371V-SEGSV----------------------------PNGDSQSGVD---------------
372-------------------------S------LRKHLRADTF-TQQQL------------
373--------------EALDRV-FERPSYPDVFQASE-------HIKSEQ--GNE-YS-L--
374PALTP-G-------LDEVKSSLSAS-TNPELG----------------------------
375-------------------------------------------------------SNVS-
376-GTQTYP--------------VVT------------------------------------
377---------------------------------------------------GRDMASTT-
378--LPG--------------------------------------------------YPPHV
379PP----------------------------------------------------------
380--------------------------------------------------------TGQG
381S----YPTST-----L-----------AGMVP----------------------------
382------------------EA---------------------------------AVGPSSS
383--------------------------------------L-------------------MS
384KPGRKLA-----------------------------EVPPCV----QPT-----------
385----------------------------------