/cons_test/results/constest_aa.log
http://github.com/sbotond/phylosim · Unknown · 449 lines · 419 code · 30 blank · 0 comment · 0 complexity · 2167977746f390937b7e6471472abdd7 MD5 · raw file
- R version 2.14.1 (2011-12-22)
- Copyright (C) 2011 The R Foundation for Statistical Computing
- ISBN 3-900051-07-0
- Platform: x86_64-unknown-linux-gnu (64-bit)
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- > #!/usr/bin/env Rscript
- >
- > source("common.R");
- Loading required package: R.oo
- Loading required package: R.methodsS3
- R.methodsS3 v1.2.1 (2010-09-18) successfully loaded. See ?R.methodsS3 for help.
- R.oo v1.8.3 (2011-11-01) successfully loaded. See ?R.oo for help.
- Attaching package: ‘R.oo’
- The following object(s) are masked from ‘package:R.methodsS3’:
- throw.default
- The following object(s) are masked from ‘package:methods’:
- getClass, getClasses, getMethods
- The following object(s) are masked from ‘package:base’:
- attach, detach, environment, gc, load, save
- Loading required package: ape
- Loading required package: compoisson
- Loading required package: MASS
- Loading required package: ggplot2
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- flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx rdtscp lm constant_tsc ida nonstop_tsc pni monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr sse4_1 sse4_2 popcnt lahf_lm
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- flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx rdtscp lm constant_tsc ida nonstop_tsc pni monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr sse4_1 sse4_2 popcnt lahf_lm
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- flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx rdtscp lm constant_tsc ida nonstop_tsc pni monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr sse4_1 sse4_2 popcnt lahf_lm
- bogomips : 4800.08
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- flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx rdtscp lm constant_tsc ida nonstop_tsc pni monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr sse4_1 sse4_2 popcnt lahf_lm
- bogomips : 4800.13
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- flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx rdtscp lm constant_tsc ida nonstop_tsc pni monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr sse4_1 sse4_2 popcnt lahf_lm
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- flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall nx rdtscp lm constant_tsc ida nonstop_tsc pni monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr sse4_1 sse4_2 popcnt lahf_lm
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- >
- > # model parameters:
- > wag.true.gamma.shape<-1;
- >
- > source("aa_funcs.R");
- >
- > res.bak<-iterate_seq_len(tree,length_range,reps,simulate_aa,estimate_aa);
- > res<-res_to_dframe(res.bak$res);
- >
- > write.table(res,file="results/constest_aa.tab");
- > write.table(res.bak$times,file="results/times_aa.tab");
- > ttab<-print_times(res.bak$times,"results/ttab_aa.tab");
- > save_times_latex(ttab,"ttab_aa");
- [1] TRUE
- >
- > pdf("results/constest_aa.pdf");
- > plot_dframe(res,tree)
- >
- >