/examples/test_apis.json

{
  "name": "JCVI_PEP_metagenomic.orf.1134269553439.1",
  "tree": "((JCVI_PEP_metagenomic.orf.1134269553439.1:0.28882,(((CUH1gC08mGRS+bsqXyyLFmtJmBg__Haloarcula_hispanica_ATCC_33960:0.03239,fc6eGID3t1uM1z6pXua6EIeLAfg__Haloarcula_marismortui_ATCC_43049:0.02675)100:0.09151,2eAlGs9xzxDUorKX36cbFMCKWSw__Haloferax_volcanii_DS2:0.13056)98:0.02838,(H9tyQ+h+4RQaMvaCAYRGEl+pUDI__Haloarcula_marismortui_ATCC_43049:0.05048,QAyFNkE1vGEX25mw+vIevnbgFR0__Haloarcula_hispanica_ATCC_33960:0.04952)100:0.10918)100:0.16494)76:0.012934999999999974,(((6ioQRtI9kXRcqAe+g1y58lq1dv0__Hoeflea_phototrophica_DFL-43:0.21346,(EaBzS+f1NWsxyEAaNquTZ51axbs__Jannaschia_sp._CCS1:0.19024,HE7ljTnda1/msYBtnjseG4OxFIA__Rhodobacter_sp._SW2:0.19973)98:0.03128)70:0.0178,jcFdOjKTHy41lDlxTUcjnQcYSZs__Aurantimonas_manganoxydans_SI85-9A1:0.21096)100:0.07382,((((((EU9MSEpa6EGbQn7q9GYFhhL1qc8__Clostridium_botulinum_type_C_-_Eklund:0.02147,L4q7ztiyzpUmdSE38yoNIemMMyE__Clostridium_novyi_NT:0.02692)100:0.16813,JpStRzuXJeLW/uFQhdhc82zl/J8__Clostridium_cellulovorans_743B_ATCC_35296:0.19051)99:0.03601,(sArgeTdrJYoKD+9Pu4JN0JmL6ZE__Clostridium_papyrosolvens_DSM_2782:0.05915,Yk5JVDEWKaGx1LlBm4m6rnE+NVY__Clostridium_cellulolyticum_H10:0.05573)100:0.18131)54:0.00949,(((bmfGb78dB0z1BzG92IV51Le/VXQ__Eubacterium_siraeum_DSM_15702:0.01071,SXW/Tvnslao1cX/E35D/+4uh18s__Eubacterium_siraeum_70/3:0.01035)90:0.00838,7eNUZrAgtGFdD3s9m1i6fx2Ijbw__Eubacterium_siraeum_V10Sc8a:0.01925)100:0.23848,B5AlQiojiE+Jdwld8lghgGbPlOs__Anaerotruncus_colihominis_DSM_17241:0.26199)66:0.01091)97:0.03339,(Y88qGqN2KZOFdu0MBV7VZzw04o4__Spirochaeta_smaragdinae_DSM_11293:0.22868,vIXMswBFDZVI+PBdgy3N65CI/Ic__Spirochaeta_sp._Buddy:0.2727)93:0.03362)24:0.00216,((((((((PRKXQMBMpl3THwIu42rCf7ScRGQ__Desulfovibrio_vulgaris_str._Hildenborough:0.00149,gIqE7v3/6+C8iY2yGhxqI1gKZsk__Desulfovibrio_vulgaris_DP4:0.00113)100:0.12424,NyTdpUUFCeXWbEb8ar7BcYpeuKc__Desulfovibrio_vulgaris_str._'Miyazaki_F':0.13572)78:0.01341,sY3WVq4RCh1r5ebaaWOjRUqvEhE__Desulfovibrio_alaskensis_G20:0.13989)62:0.01205,FBcKR9vHIqCnUW92s7n8XDuhvok__Bilophila_sp._4_1_30:0.17559)58:0.01889,KdE3aMpPeStSP4lT4k6XXBILOUY__Desulfotalea_psychrophila_LSv54:0.16376)16:0.00743,((tC4DgG7QkigL7vbZ8ap3YBm2PT8__Desulfomicrobium_baculatum_DSM_4028:0.15101,MMGbl1dKC0Rd/FMlNjJVlePPEUs__Desulfovibrio_aespoeensis_Aspo-2:0.17569)34:0.01084,ei1R+foPTAg8L5AqVXu0bVkTgjk__Desulfohalobium_retbaense_DSM_5692:0.19028)20:0.00778)9:0.00268,kh4n9Z676j7/xCm2fYx4ioV/PvM__Desulfovibrio_salexigens_DSM_2638:0.19276)100:0.04615,(((((((iJQtIykihmEAPd1lKOSIvSdLMJE__Desulfotomaculum_ruminis_DSM_2154:0.10248,dfIqiH50AjETs72UW8GYHpIXjJA__Desulfotomaculum_reducens_MI-1:0.10676)100:0.03716,y3dVBLUVplQySRTxuvYBCheTb1Q__Heliobacterium_modesticaldum_Ice1:0.14245)62:0.00945,JW0WEDpnD0+Xn/smk2THM/jLXKA__Thermincola_potens_JR:0.15589)73:0.01311,bS/8n7CfS+9vprbClOBpKWoycAQ__Moorella_thermoacetica_ATCC_39073:0.16775)100:0.03226,(bfjbkjS/sfMAU3hXfcybLPfWG2k__Paenibacillus_mucilaginosus_KNP414:0.11515,4gS8md7qAB5tq4f7JUwQ2KKDx6Q__Paenibacillus_sp._JDR-2:0.12141)100:0.1318)57:0.00729,((xt/5guyDvM9gMKjc8I6m9dr524o__Calditerrivibrio_nitroreducens_DSM_19672:0.13748,WxkOLU4DB8qTRtNVZcGD1sqtXiI__Deferribacter_desulfuricans_SSM1:0.13602)98:0.03166,IpS1RyKd7HWJTRvjAhgy5mYDPaY__Denitrovibrio_acetiphilus_DSM_12809:0.19923)100:0.03972)43:0.00831,(((((k5JvEukAiIDG/bV9P+6vMDHfXSI__Mesotoga_prima_MesG1.Ag.4.2:0.17233,yhxCi6NzR3eUEMO5Mca8ccEWv+g__Kosmotoga_olearia_TBF_19.5.1:0.13515)98:0.03023,NuGmdzKTPgaPZjiVFsr/7pW5Vwk__Mesotoga_prima_MesG1.Ag.4.2:0.23701)70:0.01985,(6ZCLcxPWokanynWHCZaQBXzPjDI__Archaeoglobus_veneficus_SNP6:0.09911,ctQWzQ2I9XGNXQvCtrxdjh8RvFA__Archaeoglobus_fulgidus_DSM_4304:0.10788)100:0.10056)55:0.01473,JUmyi//duFKbbCqlIDKzOXmuSY8__Haliangium_ochraceum_DSM_14365:0.26105)39:0.00922,((UdvV/B17qRRIO+PVgrOYwf4bTXg__Anaerobaculum_hydrogeniformans_ATCC_BAA-1850:0.16241,2Ls/1YH+h3vnFGRqnescRb1QRlI__Aminobacterium_colombiense_DSM_12261:0.14485)99:0.04281,(R3uGghNs5c3Y0ovjVFDpyYWHTOY__Dethiosulfovibrio_peptidovorans_DSM_11002:0.18874,dfTYyoAAbKhWC45d4YAAPV9unk0__Jonquetella_anthropi_E3_33_E1:0.2107)46:0.0033)100:0.05403)3:0.00202):0.00208)3:0.00696)33:0.0083)38:0.010965000000000027);",
  "strict_consensus": {
    "kingdom": "Archaea",
    "kingdom_outgroup": 1,
    "phylum": "Euryarchaeota",
    "phylum_outgroup": 1,
    "class": "Halobacteria",
    "class_outgroup": 1,
    "order": "Halobacteriales",
    "order_outgroup": 1,
    "family": "Halobacteriaceae",
    "family_outgroup": 1,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "relaxed_consensus": {
    "kingdom": "Archaea",
    "kingdom_outgroup": 1,
    "phylum": "Euryarchaeota",
    "phylum_outgroup": 1,
    "class": "Halobacteria",
    "class_outgroup": 1,
    "order": "Halobacteriales",
    "order_outgroup": 1,
    "family": "Halobacteriaceae",
    "family_outgroup": 1,
    "genus": "Haloarcula",
    "genus_outgroup": 1,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "strict_taxon_id": 2236,
  "strict_taxon": "Halobacteriaceae",
  "relaxed_taxon_id": 2237,
  "relaxed_taxon": "Haloarcula",
  "bootstrap": 76
}
{
  "name": "foobar",
  "tree": "NO_TREE",
  "strict_consensus": {
    "kingdom": "NO_TREE",
    "phylum": "NO_TREE",
    "class": "NO_TREE",
    "order": "NO_TREE",
    "family": "NO_TREE",
    "genus": "NO_TREE",
    "species": "NO_TREE"
  },
  "relaxed_consensus": {
    "kingdom": "NO_TREE",
    "phylum": "NO_TREE",
    "class": "NO_TREE",
    "order": "NO_TREE",
    "family": "NO_TREE",
    "genus": "NO_TREE",
    "species": "NO_TREE"
  }
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269553443.1",
  "tree": "NO_TREE",
  "strict_consensus": {
    "kingdom": "NO_TREE",
    "phylum": "NO_TREE",
    "class": "NO_TREE",
    "order": "NO_TREE",
    "family": "NO_TREE",
    "genus": "NO_TREE",
    "species": "NO_TREE"
  },
  "relaxed_consensus": {
    "kingdom": "NO_TREE",
    "phylum": "NO_TREE",
    "class": "NO_TREE",
    "order": "NO_TREE",
    "family": "NO_TREE",
    "genus": "NO_TREE",
    "species": "NO_TREE"
  }
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269553503.1",
  "tree": "NO_TREE",
  "strict_consensus": {
    "kingdom": "NO_TREE",
    "phylum": "NO_TREE",
    "class": "NO_TREE",
    "order": "NO_TREE",
    "family": "NO_TREE",
    "genus": "NO_TREE",
    "species": "NO_TREE"
  },
  "relaxed_consensus": {
    "kingdom": "NO_TREE",
    "phylum": "NO_TREE",
    "class": "NO_TREE",
    "order": "NO_TREE",
    "family": "NO_TREE",
    "genus": "NO_TREE",
    "species": "NO_TREE"
  }
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269553525.1",
  "tree": "((JCVI_PEP_metagenomic.orf.1134269553525.1:0.28245,(AeJTIv/++Di/jskyI9rCelRGskY__UDEL_CHESAPEAKE_VIROPLANKTON_SMPL:0.26674,L32WHWBUuzwH975IX6EAYl1hP48__UDEL_CHESAPEAKE_VIROPLANKTON_SMPL:0.27532)96:0.06853)74:0.02155499999999999,(((GqPn4m8LUeR97mPo2qCZNAkN3LE__Burkholderia_sp._Ch1-1,GqPn4m8LUeR97mPo2qCZNAkN3LE__Burkholderia_sp._Ch1-1):0.2355,scQyBL12xTPWM2XZ80FHueZcBUQ__Desulfovibrio_sp._FW1012B:0.30499)50:0.02028,PgflL12p8FsipcqlgjRC3rRXBvo__UDEL_CHESAPEAKE_VIROPLANKTON_SMPL:0.2784):0.002975000000000009);",
  "strict_consensus": {
    "kingdom": "Viruses",
    "kingdom_outgroup": 1,
    "phylum": "Marine_Viruses",
    "phylum_outgroup": 1,
    "class": "Planktonic_Viruses",
    "class_outgroup": 1,
    "order": "Chesapeak_Viruses",
    "order_outgroup": 1,
    "family": "Chesapeak_Viruses_X",
    "family_outgroup": 1,
    "genus": "Chesapeak_Viruses_XX",
    "genus_outgroup": 1,
    "species": "UDEL_CHESAPEAKE_VIROPLANKTON_SMPL",
    "species_outgroup": 1
  },
  "relaxed_consensus": {
    "kingdom": "Viruses",
    "kingdom_outgroup": 1,
    "phylum": "Marine_Viruses",
    "phylum_outgroup": 1,
    "class": "Planktonic_Viruses",
    "class_outgroup": 1,
    "order": "Chesapeak_Viruses",
    "order_outgroup": 1,
    "family": "Chesapeak_Viruses_X",
    "family_outgroup": 1,
    "genus": "Chesapeak_Viruses_XX",
    "genus_outgroup": 1,
    "species": "UDEL_CHESAPEAKE_VIROPLANKTON_SMPL",
    "species_outgroup": 1
  },
  "strict_taxon_id": -283556,
  "strict_taxon": "UDEL_CHESAPEAKE_VIROPLANKTON_SMPL",
  "relaxed_taxon_id": -283556,
  "relaxed_taxon": "UDEL_CHESAPEAKE_VIROPLANKTON_SMPL",
  "bootstrap": 74
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269553681.1",
  "tree": "((((90MsywKoDKwbueOz4blD33qOwN8__Symbiobacterium_thermophilum_IAM_14863:0.1681,kpi5AE2w9XurqajWt949DanSk7Y__Spirochaeta_smaragdinae_DSM_11293:0.20805)45:0.0119,(lZ6tF2rtrEMxDL2rQf3yhKvBp9M__Roseiflexus_sp._RS-1:0.05386,Y9/kCQdiaYGymbhNubj2srbiKVE__Roseiflexus_castenholzii_DSM_13941:0.05524)100:0.15644)10:0.01002,7ZkaHKYc1+fFtVedU1W+iyTmqmk__Meiothermus_silvanus_DSM_9946:0.31416)2:0.0036249999999999893,((((((((WvOoHAvPOMHMh7De2ewi3gWnByI__Thermococcus_sp._AM4:0.02836,Fs/GHiQwnIlJEwKqBJQ+h+XCTiU__Thermococcus_gammatolerans_EJ3:0.0302)56:0.01173,CJgLfI+FdI04LibRESORqGGNwnA__Thermococcus_kodakarensis_KOD1:0.04426)67:0.00918,SHEu4MKdrJLR6fRlKyHojGk1O8o__Thermococcus_sp._4557:0.05054)82:0.01838,TKdwQY8f6XhOiGdr+XyoLS6gGVw__Thermococcus_onnurineus_NA1:0.0713)91:0.0141,(fsjjA4XnLXBHO4tkp+v61w3aWxQ__Thermococcus_sibiricus_MM_739:0.06332,AfXXlL4Vw5jDmHl+b4WA6nCNDsE__Thermococcus_barophilus_MP:0.04219)99:0.03988)100:0.05843,hIq7cz7sakNGaiowEpDIvUz1CLA__Aciduliprofundum_boonei_T469:0.16561)98:0.03928,i9pmDz09Dz7Mhyvj6XFWGtj6yVA__Methanothermobacter_marburgensis_str._Marburg:0.23241)38:0.01396,(((YTY0OVtenOgXwb6ytgVDMzdVCVY__Paenibacillus_sp._JDR-2:0.19158,(((((4uMI3MdpwsS8A7dccqQGapny5+U__Providencia_rustigianii_DSM_4541:0.0272,ggWmHHeNlRhMWUNa+Qbcx9IsXpc__Providencia_alcalifaciens_DSM_30120:0.02235)94:0.02027,9InBCCz3S7n0WNh+hKx5UtHpiHQ__Providencia_rettgeri_DSM_1131:0.04279)98:0.02376,UgcJr9AlU0lPtQ247Pvbb6I1+sQ__Providencia_stuartii_ATCC_25827:0.07647)100:0.06938,(PPDhmeZ1zczCZVFll0l0maYhaK8__Proteus_penneri_ATCC_35198:0.03811,uYHYzZQEULCVcsDnpzOsR0TBK44__Proteus_mirabilis_HI4320:0.03396)100:0.11277)100:0.05371,(bxzVXsOObBTvgkGpZpJfQzYh2cI__Actinobacillus_succinogenes_130Z:0.10326,vphOKBy8K84swDUIzDW3B5IWOLY__Mannheimia_succiniciproducens_MBEL55E:0.08424)100:0.11338)87:0.024)47:0.01476,(((E3lXP9BFGiGz1iEulq3Tx4BsZUo__Micrococcus_luteus_NCTC_2665:0.01942,cVLplGP45QvuobN87a7PZfwVRX4__Micrococcus_luteus_SK58:0.01988)100:0.19136,jQ7YEhlAgGn+TkjPY7SVCRoAPGM__Arthrobacter_arilaitensis_Re117:0.19665)64:0.02434,5mOPyOutuK5h22nkySFiwyIU2i8__Vibrio_vulnificus_YJ016:0.2314)24:0.01142)10:0.01153,((((IxUMradZhr244EeSkbVUZEqThuo__Clostridium_ljungdahlii_DSM_13528:0.08936,iUqtFlB0IlCOeY4ON23UHlI7Sgo__Clostridium_carboxidivorans_P7_P7:0.07886)100:0.06188,(WMuAV3HuY7AJBeq+DUpATDO73qI__Pediococcus_acidilactici_7_4:0.00133,ONGRTT8dtnmmDI8yEX8B2Hq0qIA__Pediococcus_acidilactici_DSM_20284:0.00332)100:0.18579)56:0.02084,((8IMkUnO5C0C+qoQQr1Kf0K3CHos__Clostridium_cellulolyticum_H10:0.16838,JiUAYjyqy2hd+e+DocO1Buj/GUw__Clostridium_leptum_DSM_753:0.16026)47:0.03026,((((MCWYmhL035KvIaWAJVGLtX2BQvA__Olsenella_uli_DSM_7084:0.14464,Mz1XKfMS4yK7mogTy8oyj9FdxQE__Atopobium_vaginae_PB189-T1-4:0.13837)76:0.02045,(HyqEKzgJ4zfUbCEJNCN88jpHbvQ__Atopobium_rimae_ATCC_49626:0.07153,VHtAnJdK4n4V6P3cwE4dxg7mWvI__Atopobium_parvulum_DSM_20469:0.0787)100:0.07822)83:0.03247,shlGk2/Z6XY3e9x2t4pFJKPpU2Y__Atopobium_vaginae_DSM_15829:0.20534)99:0.04639,(TtKoGlhnaohVSu8eHn0yPDKTQmw__Anaerococcus_lactolyticus_ATCC_51172:0.102,WieBGVSq0qa2f8yL5tJyiM4EUE8__Anaerococcus_prevotii_DSM_20548:0.10654)100:0.11789)20:0.01461)3:0.00287)2:0.00462,((((JCVI_PEP_metagenomic.orf.1134269553681.1:0.12056,BD9UnCE8Hq6cS3hB4ZBlzHTJykc__Peptoniphilus_sp._oral_taxon_386_str._F0131:0.19476)22:0.00968,GLwhS4qsKWTwG1DcP9qho1zaHzo__Clostridium_papyrosolvens_DSM_2782:0.18491)4:0.00548,51ewEFWGb4lXmJqb6UTTW7vVuuo__Clostridium_sp._7_2_43FAA:0.18001)1:0.00459,((72Knx+1qvHbdmr4RB38GTqEht2w__Clostridium_tetani_E88:0.15834,ka9Yf4Yxfp8EikNnAef05bT0WHw__Anaerostipes_caccae_DSM_14662:0.27685)24:0.01336,((op3sWpNTIPlyCsG6ze0lEyVColM__Parvimonas_micra_ATCC_33270:0.17176,flKESLtesaaGe6tew/FkF8cbj8w__Peptoniphilus_harei_ACS-146-V-Sch2b:0.17871)50:0.01865,(MeSBoRqK2cpYjGQlN5C7trNCfV0__Peptoniphilus_sp._oral_taxon_836_str._F0141:0.00338,q9XKV6a9V4RkSqyBK1HJMqQlRIQ__Peptoniphilus_lacrimalis_315-B:0.00571)100:0.1805)39:0.0203)1:0.00785)0:0.00239)2:0.00176):0.00851)3:0.00018500000000001068);",
  "strict_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Firmicutes",
    "phylum_outgroup": 0,
    "class": "Clostridia",
    "class_outgroup": 0,
    "order": "Clostridiales",
    "order_outgroup": 0,
    "family": "Clostridiales_I",
    "family_outgroup": 1,
    "genus": "Peptoniphilus",
    "genus_outgroup": 1,
    "species": "Peptoniphilus sp. oral taxon 386 str. F0131",
    "species_outgroup": 1
  },
  "relaxed_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Firmicutes",
    "phylum_outgroup": 0,
    "class": "Clostridia",
    "class_outgroup": 0,
    "order": "Clostridiales",
    "order_outgroup": 0,
    "family": "Clostridiales_I",
    "family_outgroup": 1,
    "genus": "Peptoniphilus",
    "genus_outgroup": 1,
    "species": "Peptoniphilus sp. oral taxon 386 str. F0131",
    "species_outgroup": 1
  },
  "strict_taxon_id": 575609,
  "strict_taxon": "Peptoniphilus sp. oral taxon 386 str. F0131",
  "relaxed_taxon_id": 575609,
  "relaxed_taxon": "Peptoniphilus sp. oral taxon 386 str. F0131",
  "bootstrap": 22
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269553707.1",
  "tree": "(((((((Ktz0WQ4lqMiGvq7vsur0kE5x7zw__Clostridium_butyricum_5521:0.05021,(oplcMBXtdNZmJhf0HjenG4aTgrI__Clostridium_botulinum_E3_str._Alaska_E43:0.00558,(Zvx+U6D/4Ojoj7XzuTzZ/i0ku9c__Clostridium_botulinum_E1_str._'BoNT_E_Beluga':0.00166,/IMR/3rh3Pws+bQAfUEJUmcI5yM__Clostridium_botulinum_B_str._Eklund_17B:0.00108)96:0.00401)100:0.04568)52:0.0031,JV6pC7oT8zNmTZWU6Qjmk0syL+U__Clostridium_beijerinckii_NCIMB_8052:0.04416)92:0.02091,((iSak/cnwG4tFW+um6s9Ge+Jbr0s__Clostridium_perfringens_str._13:0.00164,GWGEbt9IcrjUe4qZxvg8JKN/hq0__Clostridium_perfringens_SM101:0.0011)100:0.05805,Spp8AwpuNTeRFYKfZrmbtO3DJ54__Clostridium_sp._7_2_43FAA:0.06249)78:0.01008)100:0.02923,tlAggjh4s326ZZsa8UJjFw4l7Dg__Clostridium_tetani_E88:0.11932)68:0.01344,((evdTHBXKfbyYleG4p9i+acT9rMc__Clostridium_acetobutylicum_ATCC_824:0.10902,((BSrQbVe0qJKPBkZsHy/NN9EskOg__Clostridium_novyi_NT:0.01448,+65j2GYwDdPFGtzBQ5rlZOyZL4Q__Clostridium_botulinum_D_str._1873:0.01566)56:0.00655,p7K5evGI8+pJtQzoKyuzQK0/9nc__Clostridium_botulinum_type_C_-_Eklund:0.02632)100:0.0992)37:0.00783,((FCMupPJLNNNgPyQuxkUloU98p+8__Clostridium_kluyveri_DSM_555:0.07787,AZRtl4E3u5nHYXbT+aEvn2eZhz4__Clostridium_ljungdahlii_DSM_13528:0.0646)100:0.02811,((MCewCfng96g1hKN3e0M3ILOo5c0__Clostridium_botulinum_F_str._230613:0.00159,(EpekyM6L3g3+//5i7pJcavSIhU8__Clostridium_botulinum_NCTC_2916:0.00091,qEOYsakbBPXvuv3mNprkZcXsHeg__Clostridium_botulinum_A_str._ATCC_3502:0.00183)64:0.00115)78:0.00445,(/w1uUyXqM/C0mwl9gbXm/MXtpxk__Clostridium_botulinum_A3_str._Loch_Maree:0.00416,fWwcc865+747H8JzEzpytS/Tjwo__Clostridium_sporogenes_ATCC_15579:0.0068)45:0.00103)100:0.0873)60:0.00959)52:0.00671)100:0.0428,((Ro+9QETkbM5O1XSqtYxlk/q2X3c__Caldicellulosiruptor_hydrothermalis_108:0.00115,7z3cPbGORv/embjcZfE5muLnQhQ__Caldicellulosiruptor_kristjanssonii_177R1B:0.00161)100:0.13328,((DMfUq7xCMtTM+asEjS0ZrhLI4l8__Clostridium_papyrosolvens_DSM_2782:0.02666,Qj7z0Xfa0IlRiIQJ9MTOdIulx3w__Clostridium_cellulolyticum_H10:0.02279)100:0.08429,g4Y1Ibc3eJmkia9HhS5uFAhMMGQ__Clostridium_thermocellum_ATCC_27405:0.10586)100:0.0329)92:0.01605)51:0.001464999999999994,((((((U+NrPSEgjf7OE47/Gai8zyCKYvE__Clostridium_difficile_NAP07:0.00137,AWF2kHEC/kPQV53LusA6jEiyGkQ__Clostridium_difficile_CD196:0.00137)100:0.09014,((ZdrIM47u+dLkANhnoh7Buos0194__Peptostreptococcus_stomatis_DSM_17678:0.03516,wWyanJhYyn6gtUrOA/vEv66vdkA__Peptostreptococcus_anaerobius_653-L:0.04429)100:0.03771,wmaqBnr2cQ1PBLfnqlyGFRX9gBg__Clostridium_hiranonis_TO-931_DSM_13275:0.07736)98:0.01945)81:0.01666,ELmcY2WzUTrimOOgbMPVDzBr6Mw__Clostridium_bartlettii_DSM_16795:0.09327)99:0.02735,QOqHxl+X3iCqPmhHCGLPnT5UdFs__Alkaliphilus_oremlandii_OhILAs:0.1491)23:0.00749,((r69BnuJXZ9Kwyd23r75rZdwlBjw__Clostridium_sticklandii_DSM_519:0.12205,kOlIR5bfyfLChXu8n8TS4fE6tM0__Eubacterium_yurii_subsp._margaretiae_ATCC_43715:0.16014)55:0.01264,iXR+e+f/y/xee8rn+o+a2F6zmUY__Parvimonas_micra_ATCC_33270:0.17868)26:0.00566)24:0.00532,((((dHptxAbOLmf6aIDUmVXGQTwfhcA__Clostridium_sp._M62/1:0.10556,(eAasRMCbjwG0Dqx2K2t89fc82UE__Clostridium_sp._SY8519:0.0798,D87YRh/3glncvha6btxTQjo4o8U__Ruminococcus_obeum_ATCC_29174:0.09554)72:0.01499)58:0.01236,((((LfmfKfl6zA3qG6qqo99qSYUCwl0__Clostridium_nexile_DSM_1787:0.04577,4NxW7r9Pxw36TwLBmIfQcDrJK3c__Coprococcus_comes_ATCC_27758:0.06917)87:0.01518,((D28kcB2s/pn8RXjoejFEv2SeIAM__Lachnospiraceae_bacterium_3_1_46FAA:0.02411,+DHk91lyK7LHDLHwhF+0Jfd1lNw__Ruminococcus_torques_L2-14:0.02521)50:0.00353,CF/OZIAbVIPq65aN10yZtVaFH5I__Ruminococcus_lactaris_ATCC_29176:0.02934)100:0.03537)50:0.00331,((0oaYs05P+Zlr057zhXnjLbeoURE__Dorea_formicigenerans_4_6_53AFAA:0.03079,lCPm7oqUe2mheJlr3QzIgzgXqqo__Dorea_longicatena_DSM_13814:0.03478)84:0.00951,TW1kuOy6PFeXXt6Jgitj4wcG96I__Lachnospiraceae_bacterium_5_1_57FAA:0.04376)99:0.01693)100:0.03466,(oSUp/ctEhyV4/1339Bjg2cnJ9Xk__Anaerostipes_caccae_DSM_14662,5fgL+hX4+70mEiChu7/1IIWaoYg__Anaerostipes_sp._3_2_56FAA)100:0.11371)56:0.00445)85:0.01982,kjhPyLp4esxWjYMmNGNPWugww1Q__Oribacterium_sp._oral_taxon_078_str._F0262:0.14785)93:0.02842,JCVI_PEP_metagenomic.orf.1134269553707.1:0.04823):0.00399)22:0.008265000000000007);",
  "strict_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Firmicutes",
    "phylum_outgroup": 0,
    "class": "Clostridia",
    "class_outgroup": 0,
    "order": "Clostridiales",
    "order_outgroup": 0,
    "family": "Mixed",
    "family_outgroup": 0,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "relaxed_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Firmicutes",
    "phylum_outgroup": 0,
    "class": "Clostridia",
    "class_outgroup": 0,
    "order": "Clostridiales",
    "order_outgroup": 0,
    "family": "Lachnospiraceae",
    "family_outgroup": 1,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "strict_taxon_id": 186802,
  "strict_taxon": "Clostridiales",
  "relaxed_taxon_id": 186803,
  "relaxed_taxon": "Lachnospiraceae"
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269553725.1",
  "tree": "(PSGZ0hqh9fzKZDXVNLxi49pqyUo__Syntrophus_aciditrophicus_SB,((((U/ByRAzAGJNOwlZ6g21AS+kXgzk__Bifidobacterium_animalis_subsp._lactis_AD011,GrEwmdF1L++cvAB00DGoZun2pcQ__Bifidobacterium_animalis_subsp._lactis_BB-12)100:0.04004,njaXH9SP5HNjhlGB9DhlbJB1hA8__Bifidobacterium_gallicum_DSM_20093:0.04238)92:0.01617,(((WjcMU4Nky5yrM08fBwMWT7mI3VI__Gardnerella_vaginalis_409-05:0.00118,NN1OSrftGXxhFeaAL28TPYRxxy4__Gardnerella_vaginalis_AMD:0.00159)77:0.00261,2oxeb6Rikjd9T6jVgsKW/a/c4kQ__Gardnerella_vaginalis_5-1:0.00567)100:0.05782,((((RNSr3vedwxq/uVC7oKpmi1RG3MI__Bifidobacterium_adolescentis_ATCC_15703:0.00371,Chadm/MPSCwOGputrMxsQg2JsXE__Bifidobacterium_adolescentis_L2-32:0.00454)97:0.01018,kgY+jxZkTf5khDIIUegwu+wF/EE__Bifidobacterium_longum_subsp._longum_JCM_1217:0.01588)70:0.0062,zcYaGAVpyo7EPtEp2ralgPNwuKs__Bifidobacterium_angulatum_DSM_20098_=_JCM_7096:0.01854)62:0.00572,(8eofARn4l6crg6eEh1das2Mdnxo__Bifidobacterium_longum_subsp._longum_ATCC_55813:0.00172,7JG6iYuLfMehOSfkZ1GnX6s6AEA__Bifidobacterium_longum_subsp._infantis_CCUG_52486:0.00103)100:0.03103)100:0.03799)36:0.00283)100:0.21699,(JCVI_PEP_metagenomic.orf.1134269553725.1:0.23674,((((y64Coku2oBNQY16864ZjyfJADOs__Ruminococcus_bromii_L2-63:0.1268,Ln0FOSWVcIP7CE8RmMO2DEnQmNA__Ethanoligenens_harbinense_YUAN-3:0.13419)98:0.03352,TZCwCSQwd2DrRlTMjjIb41EeT04__Ruminococcaceae_bacterium_D16:0.16794)56:0.00849,((((LWTFGnDDvCT4QIHU+2raSdzmVSg__Faecalibacterium_cf._prausnitzii_KLE1255:0.01246,8nZsW3Wa4qVp56bgAys9Vx7J3zU__Faecalibacterium_prausnitzii_A2-165:0.01141)46:0.00266,WzYm3hdlqqrxXh+Fnotj80a9dqQ__Faecalibacterium_prausnitzii_M21/2:0.01326)62:0.00394,VusvjvZreabVxp9gmmlwpuvlpVA__Faecalibacterium_prausnitzii_L2-6:0.0133)100:0.0742,vRG+zv7iZ/WV8pFPlWhFUxBJND0__Subdoligranulum_variabile_DSM_15176:0.09805)100:0.13097)11:0.00817,((((((MCewCfng96g1hKN3e0M3ILOo5c0__Clostridium_botulinum_F_str._230613:0.0017,(EpekyM6L3g3+//5i7pJcavSIhU8__Clostridium_botulinum_NCTC_2916:0.001,qEOYsakbBPXvuv3mNprkZcXsHeg__Clostridium_botulinum_A_str._ATCC_3502:0.00174)67:0.00104)78:0.00451,(/w1uUyXqM/C0mwl9gbXm/MXtpxk__Clostridium_botulinum_A3_str._Loch_Maree:0.00347,fWwcc865+747H8JzEzpytS/Tjwo__Clostridium_sporogenes_ATCC_15579:0.00748)37:0.00097)100:0.08355,FCMupPJLNNNgPyQuxkUloU98p+8__Clostridium_kluyveri_DSM_555:0.11851)100:0.06133,kOlIR5bfyfLChXu8n8TS4fE6tM0__Eubacterium_yurii_subsp._margaretiae_ATCC_43715:0.17522)60:0.01031,s1O7VX/7wEnrVsZwabPGUe27xaI__Eubacterium_saphenum_ATCC_49989:0.19092)34:0.01116,(((kTJutNX2MjxXZRUVR9qYLQkm/dk__Marvinbryantia_formatexigens_DSM_14469:0.10208,eAasRMCbjwG0Dqx2K2t89fc82UE__Clostridium_sp._SY8519:0.09244)80:0.01987,((((((LfmfKfl6zA3qG6qqo99qSYUCwl0__Clostridium_nexile_DSM_1787:0.0464,4NxW7r9Pxw36TwLBmIfQcDrJK3c__Coprococcus_comes_ATCC_27758:0.06855)76:0.0118,0p3CsP/6KyelG9TfV05djq28b/Q__Lachnospiraceae_bacterium_2_1_58FAA:0.05743)46:0.00332,((+DHk91lyK7LHDLHwhF+0Jfd1lNw__Ruminococcus_torques_L2-14:0.02432,D28kcB2s/pn8RXjoejFEv2SeIAM__Lachnospiraceae_bacterium_3_1_46FAA:0.02499)60:0.00415,CF/OZIAbVIPq65aN10yZtVaFH5I__Ruminococcus_lactaris_ATCC_29176:0.02872)100:0.02946)67:0.00717,((lCPm7oqUe2mheJlr3QzIgzgXqqo__Dorea_longicatena_DSM_13814:0.03532,0oaYs05P+Zlr057zhXnjLbeoURE__Dorea_formicigenerans_4_6_53AFAA:0.03025)81:0.00984,TW1kuOy6PFeXXt6Jgitj4wcG96I__Lachnospiraceae_bacterium_5_1_57FAA:0.04344)96:0.01935)100:0.03338,KSux9f/i+Tbw//SmUSCep0ad94w__Clostridium_phytofermentans_ISDg:0.11411)14:0.00136,9dxM6T91uDHWe7N6bMe58uCLoEc__Abiotrophia_defectiva_ATCC_49176:0.12678)26:0.00842)100:0.04526,(((((szBQMR9oir1YhX5GnRPcoPUAjUc__Caldicellulosiruptor_owensensis_OL:0.00407,8zmpOqKdoi5ckecIaY0U3jzZG54__Caldicellulosiruptor_kronotskyensis_2002:0.00422)62:0.00277,(7z3cPbGORv/embjcZfE5muLnQhQ__Caldicellulosiruptor_kristjanssonii_177R1B:0.00153,Ro+9QETkbM5O1XSqtYxlk/q2X3c__Caldicellulosiruptor_hydrothermalis_108:0.00123)72:0.00275)20:0.00056,+OTHEG30fCIrdxqyjgHTYjsrJck__Caldicellulosiruptor_bescii_DSM_6725:0.01048)73:0.00334,6g2KGfUx+lpzY6gM7NL2s+XWYJQ__Caldicellulosiruptor_obsidiansis_OB47:0.01392)100:0.01969,xLwSp4CiaT4iWqfIjPArm66roxo__Caldicellulosiruptor_saccharolyticus_DSM_8903:0.02658)100:0.12134)12:0.00629):0.00457)16:0.01374)48:0.02987)69:0.37164);",
  "strict_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Firmicutes",
    "phylum_outgroup": 1,
    "class": "Clostridia",
    "class_outgroup": 1,
    "order": "Mixed",
    "order_outgroup": 0,
    "family": "Mixed",
    "family_outgroup": 0,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "relaxed_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Firmicutes",
    "phylum_outgroup": 1,
    "class": "Clostridia",
    "class_outgroup": 1,
    "order": "Clostridiales",
    "order_outgroup": 1,
    "family": "Mixed",
    "family_outgroup": 0,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "strict_taxon_id": 186801,
  "strict_taxon": "Clostridia",
  "relaxed_taxon_id": 186802,
  "relaxed_taxon": "Clostridiales",
  "bootstrap": 48
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269553743.1",
  "tree": "(JCVI_PEP_metagenomic.orf.1134269553743.1,(G1dbCv74xHjXLeJ3yDtgkgfh0o0__Prochlorococcus_phage_P-SSP7:0.10622,(cBrHq6nZgbUm7igeUXLi2HYEc/E__UDEL_CHESAPEAKE_VIROPLANKTON_SMPL:0.11414,(Mqz2hgy71bG0fN2QIc8JgXubT2Y__UDEL_CHESAPEAKE_VIROPLANKTON_SMPL:0.07233,h3ToOim7rurnc+Ndmk7yVDTCbQQ__UDEL_CHESAPEAKE_VIROPLANKTON_SMPL:0.07374)70:0.02031):0.04358)72:0.23249);",
  "strict_consensus": {
    "kingdom": "Viruses",
    "kingdom_outgroup": 0,
    "phylum": "Mixed",
    "phylum_outgroup": 0,
    "class": "Mixed",
    "class_outgroup": 0,
    "order": "Mixed",
    "order_outgroup": 0,
    "family": "Mixed",
    "family_outgroup": 0,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "relaxed_consensus": {
    "kingdom": "Viruses",
    "kingdom_outgroup": 0,
    "phylum": "Marine_Viruses",
    "phylum_outgroup": 0,
    "class": "Planktonic_Viruses",
    "class_outgroup": 0,
    "order": "Chesapeak_Viruses",
    "order_outgroup": 0,
    "family": "Chesapeak_Viruses_X",
    "family_outgroup": 0,
    "genus": "Chesapeak_Viruses_XX",
    "genus_outgroup": 0,
    "species": "UDEL_CHESAPEAKE_VIROPLANKTON_SMPL",
    "species_outgroup": 0
  },
  "strict_taxon_id": 10239,
  "strict_taxon": "Viruses",
  "relaxed_taxon_id": -283556,
  "relaxed_taxon": "UDEL_CHESAPEAKE_VIROPLANKTON_SMPL"
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269553853.1",
  "tree": "NO_TREE",
  "strict_consensus": {
    "kingdom": "NO_TREE",
    "phylum": "NO_TREE",
    "class": "NO_TREE",
    "order": "NO_TREE",
    "family": "NO_TREE",
    "genus": "NO_TREE",
    "species": "NO_TREE"
  },
  "relaxed_consensus": {
    "kingdom": "NO_TREE",
    "phylum": "NO_TREE",
    "class": "NO_TREE",
    "order": "NO_TREE",
    "family": "NO_TREE",
    "genus": "NO_TREE",
    "species": "NO_TREE"
  }
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269553913.1",
  "tree": "(JCVI_PEP_metagenomic.orf.1134269553913.1,(f/qi1A4VQ5ymIbSiyfqZ3LA8Cms__Octadecabacter_arcticus_238:0.01392,(X9MkELV2HUhPWJ2Z+YAbsBxsChw__Octadecabacter_arcticus_238,(ndp8RmDGYpOM6vkBh/HW2NI6/xY__Octadecabacter_arcticus_238:0.00103,((08qHODj5eNnC9/e1uQLNGL44pPc__Octadecabacter_arcticus_238:0.02175,((N9kBGsabf7Yn6oepH54l4PMP2Nc__Octadecabacter_arcticus_238:0.00296,D51mmsdZEhETZSTcNAiJojWVw1U__Octadecabacter_arcticus_238:0.00022)88:0.01629,2tM94O8qJEXOha9eofFBKkeSMUA__Octadecabacter_arcticus_238:0.0343)92:0.0094)100:0.01106,OQG8fs0Sg/wiaDIz2ci3EwQKS0w__Octadecabacter_arcticus_238):0.00312)88:0.00537)62:0.01608)94:0.09108);",
  "strict_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Proteobacteria",
    "phylum_outgroup": 0,
    "class": "Alphaproteobacteria",
    "class_outgroup": 0,
    "order": "Rhodobacterales",
    "order_outgroup": 0,
    "family": "Rhodobacteraceae",
    "family_outgroup": 0,
    "genus": "Octadecabacter",
    "genus_outgroup": 0,
    "species": "Octadecabacter arcticus 238",
    "species_outgroup": 0
  },
  "relaxed_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Proteobacteria",
    "phylum_outgroup": 0,
    "class": "Alphaproteobacteria",
    "class_outgroup": 0,
    "order": "Rhodobacterales",
    "order_outgroup": 0,
    "family": "Rhodobacteraceae",
    "family_outgroup": 0,
    "genus": "Octadecabacter",
    "genus_outgroup": 0,
    "species": "Octadecabacter arcticus 238",
    "species_outgroup": 0
  },
  "strict_taxon_id": 391616,
  "strict_taxon": "Octadecabacter arcticus 238",
  "relaxed_taxon_id": 391616,
  "relaxed_taxon": "Octadecabacter arcticus 238"
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269554079.1",
  "tree": "(((((((HOJCaR4wYBGzTq9oSkIS5Q4Ls0k__Nitrosococcus_oceani_ATCC_19707:0.02408,FnMIHzNJvds+lhGtLYzpqOf9APo__Nitrosococcus_watsonii_C-113:0.02721)100:0.06496,zoUdNAEYCvXIjJULt94PFuDQzpc__Nitrosococcus_halophilus_Nc4:0.08841)100:0.10987,JQXNVxwmdpepWd5D1XNax+4lTNk__Thioalkalivibrio_sulfidophilus_HL-EbGr7:0.2038)100:0.02886,KJr6vZphUOUk6YlOnN60Q7tfeIQ__Allochromatium_vinosum_DSM_180:0.23217)72:0.01525,EqRC7REoRo84FAmx0atNkenck/M__Thiomicrospira_crunogena_XCL-2:0.25466)100:0.05084,nW5EUHkAZUU5x5fNIA32fmQCFOA__Reinekea_blandensis_MED297:0.33205)100:0.0064050000000000495,((((((e/Oei6cU7XIHJJYS4vIWvwqszXI__Zobellia_galactanivorans:0.09623,JJ+r5wKbRSHCU+zXg0KMUVmca/s__Cellulophaga_algicola_DSM_14237:0.10433)93:0.01968,KjmwZHm0hLN7TTeQV61Lvj9MSXQ__Robiginitalea_biformata_HTCC2501:0.11595)96:0.01759,kmRomNbRzhLjahFcH8JrMpU6Fdc__Lacinutrix_sp._5H-3-7-4:0.13654)89:0.01641,(4QBZ8nW5Gm+BxuqBrb+aEDVkjWQ__Flavobacteria_bacterium_MS024-3C:0.14839,mkaddLpcMIs5fyqvfW+Hyk3f9OQ__Flavobacteria_bacterium_MS024-2A:0.156)61:0.00993)96:0.02322,ua64l/giY+PNZvxsk0gXC5UUc8Q__unidentified_eubacterium_SCB49:0.1715)100:0.16545,((uQ/7LIXeAR6M7vWXgV211SOh7Lg__Pseudoalteromonas_haloplanktis_TAC125:0.16334,+PoSl81po1s/O/K9l403cb74Dm0__Vibrio_shilonii_AK1:0.16517)100:0.17836,(((b0kn5hz0Wcztkx/uzGjfT16+HoE__marine_gamma_proteobacterium_HTCC2080:0.30043,(((S+CtQBnl+BmRst+aOOcQXwEBIc4__Hirschia_baltica_ATCC_49814:0.22396,Je37QjnJqKPBNMU2cbEpryqTmos__Hyphomonas_neptunium_ATCC_15444:0.22896)100:0.02648,(x2N1JnrGOuPVenUDdaeFmGp/CpM__Maricaulis_maris_MCS10:0.2033,2+Z1m58OvEEmJ8gLBi/Oiy4oZv0__Oceanicaulis_alexandrii_HTCC2633:0.20363)100:0.03984)100:0.03331,((Y0Rc0ViLRFKHKO6tzEgLgyZB8P4__Gamma_proteobacterium_NOR51-B:0.16882,PxOai74cXiV5fjpprL1nXpSnEQE__marine_gamma_proteobacterium_HTCC2080:0.17436)82:0.02017,((lyGzLKpBhXAOZLo9Mf+OKwEbiiI__Gamma_proteobacterium_NOR5-3:0.04026,T8CWgAeZJS9b2E/SYdIViG8A77o__Congregibacter_litoralis_KT71:0.04027)100:0.13618,JCVI_PEP_metagenomic.orf.1134269554079.1:0.19946)61:0.01093)100:0.08705)100:0.03922)85:0.01352,1VxXBu5vjrTU0A0SH9QyYsWX9Ik__Moritella_sp._PE36:0.32501)39:0.00394,((((((((vxydHzeIws+6idR8YX/SWrqwf+0__Pseudoalteromonas_haloplanktis_TAC125:0.09533,OTgqiJe1dN23pMpZZOGbtvGp9Kk__Pseudoalteromonas_tunicata_D2:0.09552)100:0.07031,2U2png2S4yLRUeKXzf2T+e5rWtI__Saccharophagus_degradans_2-40:0.17357)91:0.01878,8bdWyveI35sTQN+WN8rLDOM80p8__Hahella_chejuensis_KCTC_2396:0.18941)100:0.03298,LAi4NPxMfOePAb/X2jJf/qu6PFg__Moritella_sp._PE36:0.2222)97:0.0148,GZ0+9m/v9FPFYOvdxhg6GOKSu1I__Kangiella_koreensis_DSM_16069:0.23881)100:0.02883,R0P+/4RiZvz39km293kgm4qvT6I__Verrucomicrobiales_DG1235:0.27499)97:0.01526,yNHWFqJp0UwHIf6KdevbdQburkw__marine_gamma_proteobacterium_HTCC2143:0.28668)74:0.0113,((((((VxIzEetTs9bYH0XcvZk8kXUq9A4__Limnobacter_sp._MED105:0.25423,WvjDMDwx26L8vBPPjXrgaZT0qbs__Desulfohalobium_retbaense_DSM_5692:0.24528)60:0.00531,96C0PhWZ9S80mJG6nN4hKzuDcm8__Lentisphaera_araneosa_HTCC2155:0.2608)95:0.01514,(((py3lt92RQo1iQsbrUQ+K/R++7Yk__Robiginitalea_biformata_HTCC2501:0.14779,c11CZZIb0BI862m577AN8kPNQJI__Cyclobacterium_marinum_DSM_745:0.15685)100:0.0323,WfUKeIAF/WiN4orMFzM3CF0/aZU__Rhodopirellula_baltica_SH_1:0.17778)56:0.00973,Nw3uLTcJfIpRb5kmFnRHPeZeEDQ__Saccharophagus_degradans_2-40:0.19802)100:0.09729)88:0.00929,aQA5UV3k9u6RRG9oiZ3j2YIbfeE__Bermanella_marisrubri:0.31226)91:0.01764,((((z6/gOj+S862H+pkY17zehzCL7CA__Pelobacter_carbinolicus_DSM_2380:0.20521,+Q+b/W/ALClOaTfTSDW4hB02+l0__Desulfurivibrio_alkaliphilus_AHT2:0.20497)100:0.05294,6bjsVdk7kkJ1TflfSp5HRlGLxo0__Denitrovibrio_acetiphilus_DSM_12809:0.29379)70:0.00965,(Uxwv7kKVNSG/DCevEhH86a51NIc__Desulfatibacillum_alkenivorans_AK-01:0.20617,YtahT7CRfZIsFc7i/BDiYZSiBes__delta_proteobacterium_NaphS2:0.21619)100:0.07151)42:0.00621,TGhTJXqSGeqbCBOz4DPCkqys2uY__Salinibacter_ruber_DSM_13855:0.29976)24:0.00515)64:0.00508,WDpe+2T85H5+sWa3E9uPQk8WfeQ__Oceanicaulis_alexandrii_HTCC2633:0.30882)49:0.00537):0.00349)29:0.01035)56:0.01008)92:0.04890499999999995);",
  "strict_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Proteobacteria",
    "phylum_outgroup": 0,
    "class": "Gammaproteobacteria",
    "class_outgroup": 0,
    "order": "Mixed",
    "order_outgroup": 0,
    "family": "Mixed",
    "family_outgroup": 0,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "relaxed_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Proteobacteria",
    "phylum_outgroup": 0,
    "class": "Gammaproteobacteria",
    "class_outgroup": 0,
    "order": "Mixed",
    "order_outgroup": 0,
    "family": "Mixed",
    "family_outgroup": 0,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "strict_taxon_id": 1236,
  "strict_taxon": "Gammaproteobacteria",
  "relaxed_taxon_id": 1236,
  "relaxed_taxon": "Gammaproteobacteria",
  "bootstrap": 61
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269554095.1",
  "tree": "((((((((((((((((Iw4TrsqU7/BqVLxhZhP8yN+F5ek__Streptomyces_griseoflavus_Tu4000:0.06253,fwGnFqnPAiAN34V90AT5ogsNNGw__Streptomyces_ghanaensis_ATCC_14672:0.07293)100:0.04385,hzDEPqipA9IPawsLlV+sUFU6pKI__Streptomyces_himastatinicus_ATCC_53653:0.11802)98:0.03759,(kuXiLZEEiwrHJ89p4xLA1lv3iWs__Streptomyces_griseus_subsp._griseus_NBRC_13350:0.00605,gZBX/55iP7xsEOvVRh2/gGTVNnY__Streptomyces_griseus_XylebKG-1:0.00494)100:0.13011)99:0.02609,(GKW9Vv0GGTfKIRTmdeGiImKQ9Gw__Streptomyces_sp._SA3_actF:0.07745,bBsLVj670QVzhrb1/JeWR1jFrSE__Streptomyces_sp._SPB74:0.09806)100:0.08779)68:0.018,Le7EE3s4h83TjSaSioclOdWYGFQ__Stackebrandtia_nassauensis_DSM_44728:0.19993)40:0.00956,(((8AvRma0HM6a/OJKjCg3H6wME9C4__Micromonospora_sp._L5:0.0086,lFMZZvlTKdvdtOrqQCph0eP0fnk__Micromonospora_aurantiaca_ATCC_27029:0.01189)100:0.0756,2lKGxrLI1ws5J2js3t1rRPHutZM__Micromonospora_carbonacea_var._africana._ATCC_39149:0.07809)100:0.07314,N23gvEYr7kF3dh5kevKIGfU95SQ__Streptomyces_violaceusniger_Tu_4113:0.15868)95:0.0362)36:0.01133,(D0bosZC9+oaTUHImslz3IFC34Dk__Catenulispora_acidiphila_DSM_44928:0.19217,ni/MR74nZzyLw3hJOfvblCpD0Wo__Geodermatophilus_obscurus_DSM_43160:0.18386)52:0.01591)88:0.0311,((/R3A3Q318i17f3sZsXXDPu7nTWU__Cellulomonas_flavigena_DSM_20109:0.21723,teIQVNuU3AseTcIqysvrF75vLpE__marine_actinobacterium_PHSC20C1:0.25777)38:0.0103,(gmD8AwienMCuEwFhKtVGbVcTcm8__Janibacter_sp._HTCC2649:0.18565,hk7a+gm37RW1GjsAuyPsPQwh/EI__Kineococcus_radiotolerans_SRS30216:0.21343)93:0.0443)15:0.00677)6:0.00421,lvcCRN+P+pUsYLgZFHJZNxAC8SI__Kribbella_flavida_DSM_17836:0.25124)22:0.01543,(0s1+TxVwXY5ifKPiXv7HDAmFHj4__Arthrobacter_phenanthrenivorans_Sphe3:0.1319,YxiW4ZeprHRwQLTCq1yRMaA9VRY__Arthrobacter_sp._FB24:0.11702)100:0.16263)42:0.01077,IROAU+5rLkClvlQlVBOJYTAgzj0__Microbacterium_testaceum_StLB037:0.28446)100:0.04395,(Bu53Zebi+aB+UQYXtMz0abMHVYY__Cellulomonas_fimi_ATCC_484:0.25363,4knXfTdlFXBfvBUXgaMkxjUjaOE__Dietzia_cinnamea_P4:0.28874)99:0.05957)19:0.00893,(((p4Zymwj2LNcmlzLKDiM9843ZRzw__Frankia_alni_ACN14a:0.19182,hpD6esBB3FMJPa/pYIYetaknUDE__Frankia_sp._EuI1c:0.19473)76:0.02038,((xIYo1E0xsmXO4ST5YWMWXhhWMuw__Frankia_sp._EUN1f:0.03142,5DGALPCmgf0MQF+OQer489rFdPQ__Frankia_sp._EUN1f:0.03955)100:0.14536,RxM0mH8M6+KaIJNSKbptsavr0G0__Frankia_sp._EAN1pec:0.19804)75:0.02725)100:0.07144,rNtsFt4wHuQo9iZ4NyMXG4FWUMQ__Solibacter_sp.:0.28573)25:0.00302)65:0.0162,FWpMnqxfJVsxPICeAnRivxdYvWg__Anaeromyxobacter_dehalogenans_2CP-1:0.32304)63:0.01332,((vE0+rnuQVg5MT/jZgR3f0bUWzR4__Stigmatella_aurantiaca_DW4/3-1:0.22037,cz0adyCr+qr7je9T2K8htN6nG9Y__Sorangium_cellulosum_'So_ce_56':0.22963)96:0.05917,(1OPqIIjXp5YtwNsbapGG/zwP36M__Isosphaera_pallida_ATCC_43644:0.30158,(JCVI_PEP_metagenomic.orf.1134269554095.1:0.32107,EKVwfeI2q11J1eIEZESGBIxQ4Is__Coraliomargarita_akajimensis_DSM_45221:0.31158)34:0.01011)19:0.00158)42:0.00863)90:0.02279999999999993,(x0B9MveEE4+lWpPfcztRUWgctpo__Sphingobacterium_spiritivorum_ATCC_33300:0.37535,((((G+vxCLL441vdIZXJDSQum7JPfKs__Bacillus_sp._BT1B_CT2:0.00289,ZyvbiB+vlkHrKEd6ZIoANvVsAh4__Bacillus_licheniformis_DSM_13_=_ATCC_14580:0.0012)100:0.24592,o7vwSQ4f6XVclWT7+2w8QVdffGY__Bacillus_clausii_KSM-K16:0.28923)55:0.01546,HUGeoUNbjcC0Jl2a2p6TQibvqLI__Brevibacillus_brevis_NBRC_100599:0.32527)29:0.01437,((xssmB2e4O/M6PMr4WNg+i2UEqqg__Truepera_radiovictrix_DSM_17093:0.27738,Lhow79V8XfwtrLSQ+AAWdyEHMrI__Paenibacillus_mucilaginosus_KNP414:0.27347)44:0.02306,((oZ9vGDHsQ/uoihK6Iv4EQjTimxo__Bacillus_sp._2_A_57_CT2:0.27659,(Ke9xX2radii21YF+hpS9zVVnKD4__Bacillus_megaterium_DSM_319:0.01559,Bhu2Fu67kQLOia2VA+nNTbP8xrw__Bacillus_megaterium_QM_B1551:0.01471)100:0.26478)35:0.01983,((EFko/Pq6kAkWyr6YRdpaijRGrTk__Acidobacterium_capsulatum_ATCC_51196:0.25963,Bn47ViYBtt9cB1xig5rsJPXTZ6E__Ktedonobacter_racemifer_SOSP1-21_DSM_44963:0.24243)37:0.01674,(XMalheqfUMp6WWOIOYQz03kFpGU__Plesiocystis_pacifica_SIR-1:0.26197,eH4Ij+M0OKcqOB+XaSCHwuF63xc__Koribacter_versatilis_Ellin345:0.28124)30:0.00846)10:0.00741):0.00438)4:0.00743)3:0.01092)40:0.01045000000000007);",
  "strict_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Chlamydiae/Verrucomicrobia group",
    "phylum_outgroup": 1,
    "class": "Opitutae",
    "class_outgroup": 1,
    "order": "Puniceicoccales",
    "order_outgroup": 1,
    "family": "Puniceicoccaceae",
    "family_outgroup": 1,
    "genus": "Coraliomargarita",
    "genus_outgroup": 1,
    "species": "Coraliomargarita akajimensis DSM 45221",
    "species_outgroup": 1
  },
  "relaxed_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Chlamydiae/Verrucomicrobia group",
    "phylum_outgroup": 1,
    "class": "Opitutae",
    "class_outgroup": 1,
    "order": "Puniceicoccales",
    "order_outgroup": 1,
    "family": "Puniceicoccaceae",
    "family_outgroup": 1,
    "genus": "Coraliomargarita",
    "genus_outgroup": 1,
    "species": "Coraliomargarita akajimensis DSM 45221",
    "species_outgroup": 1
  },
  "strict_taxon_id": 583355,
  "strict_taxon": "Coraliomargarita akajimensis DSM 45221",
  "relaxed_taxon_id": 583355,
  "relaxed_taxon": "Coraliomargarita akajimensis DSM 45221",
  "bootstrap": 34
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269554133.1",
  "tree": "(JCVI_PEP_metagenomic.orf.1134269554133.1,(((J99pqnGiQH9ZrzyJSLrp17WsZ6E__Chthoniobacter_flavus_Ellin428:0.15449,q8LX/0c3hsH5dmK+dVSfeDaqzV4__Pedosphaera_parvula_Ellin514:0.13409)94:0.03051,XK9sP+Gz25XlIAyaLYSDCmJkZw4__Verrucomicrobium_spinosum_DSM_4136:0.15632)90:0.02253,(0gOvmadtj80mx+lA4pmuDp7zSLg__Nitrosococcus_watsonii_C-113:0.2265,((jv1YPE/Ypnwq7feX3US7cJTjS4o__Gemmata_obscuriglobus_UQM_2246:0.14718,4ECYGuWfVqijBNSJWHKzHtPTy4M__Pirellula_staleyi_DSM_6068:0.18204)78:0.01974,((rzAaRsoEmUAWMxyOf23rnXj68hU__Desulfotomaculum_kuznetsovii_DSM_6115:0.14574,sTy+Mex88oB/+hZe2BWsZO+MwmM__Symbiobacterium_thermophilum_IAM_14863:0.14902)100:0.0488,(((((((((NG3YI+mwGcQKrjAJBwCDoe6Qo3I__Thermus_scotoductus_SA-01:0.03927,n+7E3ZXDzfNEfx6BpViAQxl70hk__Thermus_aquaticus_Y51MC23:0.03944)38:0.0017,(OG9vL1dBH+GziXThJukEsMH5heE__Thermus_thermophilus_HB8:0.0003,5VZEvCvie65QIAojWhmM6Dxihzc__Thermus_thermophilus_HB27:0.00124)100:0.04306)100:0.05334,KWYWx73Qg3zcIZQwWHBzxQ2C37Q__Marinithermus_hydrothermalis_DSM_14884:0.08671)92:0.01283,iVVfDZBilOVkBjdfO9e6Cokg6pM__Oceanithermus_profundus_DSM_14977:0.11178)97:0.01193,(q+xsgsv55DTB8yAPqzSJ2vWvK7U__Meiothermus_silvanus_DSM_9946:0.09134,tvQzLyteTAHn93l9qxxj62qpZ4U__Meiothermus_ruber_DSM_1279:0.07894)100:0.03433)100:0.03532,TbvQWWxS68F5IildzNkhRcsE/DM__Truepera_radiovictrix_DSM_17093:0.1599)58:0.00477,2/2O4u3lmYa3cU+oo/sPf87ZADs__Deinococcus_deserti_VCD115:0.18984)67:0.01553,((((((((((((aaSo56gJx/Ei+0LyN4UiRmnMwiw__Synechococcus_sp._CC9605:0.01378,u8xQ1lfkQdVYWk0r+TUOnB09vZk__Synechococcus_sp._WH_8109:0.01514)100:0.02184,(sj1A0GcWdx/sUeLBFoUQopy020w__Synechococcus_sp._BL107:0.00283,4E8UidXqD5T4jVYBpzyGzQDdH10__Synechococcus_sp._CC9902:0.00311)100:0.03836)60:0.00678,fRJL6xXppsnCaKuBMsdOaMYVu/U__Synechococcus_sp._WH_8102:0.04372)95:0.01051,8TMM1WvFZzQs+KHYMG0EfQtl7rY__Synechococcus_sp._RS9917:0.05202)56:0.00335,6BDmzyVT111Z1pexB2483neC6iU__Synechococcus_sp._RS9916:0.05474)91:0.00805,(OEhtG/fCawRjpovYXYE4cMwDc+w__Synechococcus_sp._WH_7805:0.03001,Mpb8ZOCYrI4g5l7Uo3X12+BO3Dc__Synechococcus_sp._WH_7803:0.02334)100:0.03858)81:0.00679,(JPGkvjr286U2lrD5zAAYClyDle8__Prochlorococcus_marinus_str._MIT_9313:0.00412,z/LHDXvGgaQNoGk8wEzi3y/KBrc__Prochlorococcus_marinus_str._MIT_9303:0.00348)100:0.06965)88:0.00814,xKIwFNTI28osAAMPW+eXuov7Io8__Synechococcus_sp._RCC307:0.08727)100:0.02665,wCtT2oOCr6yzAysq5xdDeCKTQM4__Prochlorococcus_marinus_str._MIT_9211:0.11588)56:0.00919,BNBnfdtn8cxpt5cf8p1v1KJNu7c__Prochlorococcus_marinus_subsp._marinus_str._CCMP1375:0.13136)100:0.04733,(((5FHXBwnDmroaFCa4tBCZIw5ZNus__Cyanothece_sp._PCC_7424:0.08257,BvraUvNx8gJVwv2pr9lby3RR8Tg__Microcystis_aeruginosa_NIES-843:0.08689)97:0.02037,(((((SK9yDNi2egGy9dBRrh6wL1PZ520__Anabaena_variabilis_ATCC_29413:0.00667,1Il4S6C8+rBJehXDJe+7qmijfx8__Nostoc_sp._PCC_7120:0.03531)100:0.03368,(D+a6UfOldfBPYNer8KVsnlA/kBs__Nodularia_spumigena_CCY9414:0.04535,Y0bPkvRPPO5R9OhwbrtlZoVki2U__'Nostoc_azollae'_0708:0.04916)46:0.00393)54:0.00532,(RJYruI718FQuLo3AQe2AznjhISE__Cylindrospermopsis_raciborskii_CS-505:0.01834,fG9I71X5rZurKqBJpHVifyov1A4__Raphidiopsis_brookii_D9:0.02129)100:0.0361)100:0.02008,wpUU68GZUJCh6oL1DgS6a2FK2zU__Oscillatoria_sp._PCC_6506:0.08569)93:0.01379,(04fYPFmthBo/yNXGzK4N2yGJj/A__Thermosynechococcus_elongatus_BP-1:0.07815,QR+ZCcWYKOz0ebRlAdpnZwoP/h4__Synechococcus_elongatus_PCC_6301:0.08521)72:0.00595)72:0.01049)71:0.01058,((YW8L3KbnFn0EliT01fIr10Mhwec__Cyanothece_sp._ATCC_51142:0.02171,t0vuTucZqRBtjaJz4k0JuZZjWRI__Cyanothece_sp._CCY0110:0.02084)100:0.01418,YRFLob53vgEAXJyGsDxxzLF/buI__Crocosphaera_watsonii_WH_8501:0.03842)100:0.08858)100:0.03654)79:0.0075,l+3tPM2cZ+wLOUd3g3cw+8eSSR4__Gloeobacter_violaceus_PCC_7421:0.14913)97:0.02144)45:0.00559,(bcVNOsTB5n97NqVD4jaedDIeCeA__Terriglobus_saanensis_SP1PR4:0.11753,zkgAojJG0LAsZEx8vkgCPAUUSy0__Granulicella_mallensis_MP5ACTX8:0.11948)100:0.0876)17:0.00207):0.00281)14:0.00499)19:0.00423)25:0.26739);",
  "strict_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Mixed",
    "phylum_outgroup": 0,
    "class": "Mixed",
    "class_outgroup": 0,
    "order": "Mixed",
    "order_outgroup": 0,
    "family": "Mixed",
    "family_outgroup": 0,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "relaxed_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Cyanobacteria",
    "phylum_outgroup": 0,
    "class": "Cyanobacteria_X",
    "class_outgroup": 0,
    "order": "Mixed",
    "order_outgroup": 0,
    "family": "Mixed",
    "family_outgroup": 0,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "strict_taxon_id": 629395,
  "strict_taxon": "Bacteria",
  "relaxed_taxon_id": -51,
  "relaxed_taxon": "Cyanobacteria_X"
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269554141.1",
  "tree": "((((tIBDp14laOLx95qPghYKjO2CffA__Clostridium_leptum_DSM_753:0.19363,(W97BgV1pYKW9Fzo6FsRPLteo2Hc__Halanaerobium_hydrogeniformans:0.2017,(qzM4ODrRGT6p/YoleytjJj6d6Gc__Thermoanaerobacter_tengcongensis_MB4:0.00196,DSAmdPIvHjUD+YpbySLJmI1mL4M__Caldanaerobacter_subterraneus_subsp._pacificus:0.00417)100:0.23216)43:0.01218)52:0.02014,(JCVI_PEP_metagenomic.orf.1134269554141.1:0.19579,(wF9L3u3t4D+OHHBzsza8LPXfU5Y__Dictyoglomus_turgidum_DSM_6724:0.01923,hGP4g+cNl3WN6EcJ2N6VCcDGgVg__Dictyoglomus_thermophilum_H-6-12:0.01869)100:0.24794)36:0.01665)31:0.005,(Dj3rmtBfgm4sCLfo1SOsNJrl8q4__Azoarcus_sp._BH72:0.18351,KxypTPJ67Na+cWtR1Yn+UTk/jKk__Kyrpidia_tusciae_DSM_2912:0.17825)100:0.08959)46:0.006159999999999999,(((((in1AasSvn9d/10E0tz2fD5f2Zp4__Sulfolobus_islandicus_HVE10/4:0.00031,ury3wjCkjdCgm/VneuH/sDmn25o__Sulfolobus_islandicus_M.16.4:0.00278)55:0.00133,(dhPv0pGhnhuTVX7MWKlzcxPZ5BE__Sulfolobus_islandicus_L.S.2.15:3.0e-05,91TZe9+sXOboNM3Lk8ydU5DS4k8__Sulfolobus_islandicus_L.D.8.5:0.00306)79:0.00176)64:0.00194,oI/wdZkUs8WYMWX+2QPj3Ob7xfI__Sulfolobus_islandicus_M.16.27:0.00423)91:0.00811,XR1vR2NBPNTiw3fWemY8fTal+QA__Sulfolobus_solfataricus_P2:0.02275)100:0.16518,((((ALlEfAOUxitMOHGDHsaRyYehb5I__Gluconacetobacter_hansenii_ATCC_23769:0.06313,mRW1J7QGLUd3EjcuJsfCoo+u4sM__Gluconacetobacter_diazotrophicus_PAl_5:0.06553)98:0.02679,H2qi/3KvLqChOqUqdeXDZJh1QOs__Acetobacter_pasteurianus_IFO_3283-03:0.07409)100:0.07524,(pc21ZVETQFgPl/keWrEmkqWH0/w__Rhizobium_etli_GR56:0.06706,N1bWPXFN98h6/He/t9tMlK+i4KQ__Burkholderia_phymatum_STM815:0.0822)100:0.11977)97:0.04153,(1G29MhXS5i7ztExYJJYPugNlvbo__Thermomicrobium_roseum_DSM_5159:0.15106,(83oPLxUOmf51aGz3w5j0CFMAa1I__Bacillus_cereus_Rock3-44:0.02038,((HHVaPbsbRX1pfsytiPhYOp3X0cg__Bacillus_cereus_Rock3-28:0.00293,ajIb/IHr3swEZtK0yCTkTPAN+qA__Bacillus_cereus_Rock1-3:3.0e-05)100:0.01423,(((fSDKqn28HJ2Z4G2Na3PVylG4h0U__Bacillus_cereus_BDRD-Cer4:0.00301,1itvFk0Sj88vDC91dM0TKbgf0lQ__Bacillus_cereus_R309803:0.00883)17:0.00018,(((3fs8ljhcHPk73Ixy89A/hWmblMM__Bacillus_cereus_NC7401,TepLzdR8e4ylRjldMrcROe+FsYI__Bacillus_cereus_m1293)49:0.00032,0GyPmAzw9uV1fPWziq9FPNqVPhs__Bacillus_cereus_Q1:0.00262)50:0.00156,fwUdrMUz7Bk2GnHSXgOs/RO6Gfg__Bacillus_thuringiensis_serovar_finitimus_YBT-020:0.00428)40:0.00135)23:0.00025,((((Dy0z+psZEbCxAAvQK23ETUkHK/Q__Bacillus_cereus_95/8201:1.0e-05,((JLQIyFZQltr3tuhM1wuz8WmT+IU__Bacillus_cereus_E33L,(+LjlGtYeMTYkuSwj9uOJ9mLv+jE__Bacillus_thuringiensis_serovar_konkukian_str._97-27:0.00291,AJmoQea5oxqVcU8nkiE5DDiFS8w__Bacillus_anthracis_str._Sterne:0.00291)73)24:1.0e-05,cwdGqLNdbG/3N+xGfiKjX2JaVLQ__Bacillus_cereus_biovar_anthracis_str._CI:0.0029)62:3.0e-05)24:1.0e-05,EWS5ivHmOL6NOOtFCivwJ32x0Tc__Bacillus_cereus_BGSC_6E1:0.00295)58:0.00033,8c4/65tbqqTFw1wa+MzWcaW3D0E__Bacillus_thuringiensis_serovar_pulsiensis_BGSC_4CC1:0.00263)66:0.0038,((((nEUrBUXgGFmR66RqpnAOjN8nLqc__Bacillus_cereus_ATCC_4342:2.0e-05,(HiuxDXWjVLYUZSi9/g/B/XvUXwE__Bacillus_cereus_G9241:0.00293,(JIJox3Vy6U9S2y/Ii95XHkoy7qs__Bacillus_weihenstephanensis_KBAB4,bjZXfyUp+5j1MQrKR2VMxYhpq+Q__Bacillus_cereus_AH621)87:0.00586)24:2.0e-05)17:2.0e-05,AwPNZRw+chDh7j5MeYLgQXndkKg__Bacillus_cereus_AH1272:0.00294)28:0.00016,t2nCEMkqKcBPSYcuVFMyS4J643A__Bacillus_cereus_MM3:0.00576)35:0.00103,(8X5NL0wMQVSHP9k6d8J2s6G51bE__Bacillus_thuringiensis_HD-789:0.0029,(ewbeTDb1pjDmuoslmQkLNHS2DmU__Bacillus_thuringiensis_IBL200:0.00294,((IXp0UI7gZrKWRPYFyjaaZCs9ONU__Bacillus_cereus_ATCC_10876:0.00295,RA8vLoymN4bx0DZHBXoOw7/hWh4__Bacillus_thuringiensis_Bt407)14,tUdkBfY17H4BN/k75YgsSAhGetA__Bacillus_cereus_BDRD-ST24):2.0e-05)19:4.0e-05)37:0.0019)58:0.00149)24:0.0008)23:0.00664)86:0.01307)98:0.14594)100:0.02249)95:0.04153)94:0.0023700000000000006);",
  "strict_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Dictyoglomi",
    "phylum_outgroup": 1,
    "class": "Dictyoglomia",
    "class_outgroup": 1,
    "order": "Dictyoglomales",
    "order_outgroup": 1,
    "family": "Dictyoglomaceae",
    "family_outgroup": 1,
    "genus": "Dictyoglomus",
    "genus_outgroup": 1,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "relaxed_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Dictyoglomi",
    "phylum_outgroup": 1,
    "class": "Dictyoglomia",
    "class_outgroup": 1,
    "order": "Dictyoglomales",
    "order_outgroup": 1,
    "family": "Dictyoglomaceae",
    "family_outgroup": 1,
    "genus": "Dictyoglomus",
    "genus_outgroup": 1,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "strict_taxon_id": 13,
  "strict_taxon": "Dictyoglomus",
  "relaxed_taxon_id": 13,
  "relaxed_taxon": "Dictyoglomus",
  "bootstrap": 36
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269554253.1",
  "tree": "(JCVI_PEP_metagenomic.orf.1134269554253.1,(((((dhPv0pGhnhuTVX7MWKlzcxPZ5BE__Sulfolobus_islandicus_L.S.2.15:0.00033,91TZe9+sXOboNM3Lk8ydU5DS4k8__Sulfolobus_islandicus_L.D.8.5:0.00276)68:0.00154,(in1AasSvn9d/10E0tz2fD5f2Zp4__Sulfolobus_islandicus_HVE10/4:6.0e-05,ury3wjCkjdCgm/VneuH/sDmn25o__Sulfolobus_islandicus_M.16.4:0.00302)65:0.00154)65:0.00215,oI/wdZkUs8WYMWX+2QPj3Ob7xfI__Sulfolobus_islandicus_M.16.27:0.00402)87:0.0071,XR1vR2NBPNTiw3fWemY8fTal+QA__Sulfolobus_solfataricus_P2:0.02376)100:0.20043,(((WixAGTZ6dKk7gNFqUcsYJ0lVXo4__Chloroflexus_aurantiacus_J-10-fl:0.02574,2USEel7ar91r/xl9wRKzQOTUq9k__Chloroflexus_aggregans_DSM_9485:0.01786)100:0.14478,1G29MhXS5i7ztExYJJYPugNlvbo__Thermomicrobium_roseum_DSM_5159:0.11513)91:0.03897,(5hCV0CamdkJoDHjGydRYDXSarYQ__Bacillus_selenitireducens_MLS10:0.13153,((XNcpNDwl6rOt7eK427CmBIxwYPQ__Bacillus_coagulans_2-6:0.01483,X8l9eNv2zqRYxCPyDCrjlGleuAg__Bacillus_coagulans_36D1:0.00272)100:0.06933,((((qKBRUaYSkvI00+7BQiXiFagcRVo__Bacillus_pumilus_SAFR-032:0.00467,keoHJUwCwvbSQE3leVotpp3MXoQ__Bacillus_pumilus_ATCC_7061:0.00982)100:0.05084,(AsbLCUmIIALIb4tO7j4MzO2Ii54__Bacillus_sp._BT1B_CT2,FmRDvbcVdYmPJtDWDwN2WKNQ+1Q__Bacillus_licheniformis_DSM_13_=_ATCC_14580)100:0.09446)96:0.0355,(((Oi19+612y88ALQmYvsS0mPfBuWg__Bacillus_subtilis_subsp._subtilis_str._RO-NN-1:0.00545,AAUvYvbVHlklVgiGfcvRzdS/IHs__Bacillus_subtilis_subsp._subtilis_str._168:0.00332)68:0.00531,(ZIOQGCaRyJ6TYjHUVr0GI6DKhz4__Bacillus_subtilis_subsp._spizizenii_str._W23:0.01147,JDkD19td1U9FPNhMl7d56iGwTCQ__Bacillus_amyloliquefaciens_FZB42:0.01777)77:0.00931)99:0.01594,iU/Xs9GDmwwMBhQ5G1pzzpP84DI__Bacillus_atrophaeus_1942:0.03377)100:0.06392)64:0.0167,((Jlmg4xQdyv67+H7+MNKTmeV1Jwc__Brevibacillus_brevis_NBRC_100599:0.06924,Dg5fCahcZU2TNncUCPtQmaoAukw__Bacillus_megaterium_QM_B1551:0.05576)58:0.0058,(83oPLxUOmf51aGz3w5j0CFMAa1I__Bacillus_cereus_Rock3-44:0.01935,(YOxBilqjT2SvwyJNPUaClpZaTJA__Bacillus_cereus_AH1271:0.00247,(((VA5sYBwGIYNDwftbyzy3HVl+d5U__Bacillus_cereus_ATCC_10987:1.0e-05,(3fs8ljhcHPk73Ixy89A/hWmblMM__Bacillus_cereus_NC7401,TepLzdR8e4ylRjldMrcROe+FsYI__Bacillus_cereus_m1293)68:0.00292)31:6.0e-05,((VHyClCTokvlvPm3LtRTLBBfFCMs__Bacillus_cereus_ATCC_14579,fSDKqn28HJ2Z4G2Na3PVylG4h0U__Bacillus_cereus_BDRD-Cer4)52:0.00011,Zb46UloHxxqScCe9Fx48B2onMqU__Bacillus_cereus_mm1550:0.00581)61:0.0029)39:0.00088,((((((tUdkBfY17H4BN/k75YgsSAhGetA__Bacillus_cereus_BDRD-ST24,IXp0UI7gZrKWRPYFyjaaZCs9ONU__Bacillus_cereus_ATCC_10876:0.00296)8,RA8vLoymN4bx0DZHBXoOw7/hWh4__Bacillus_thuringiensis_Bt407)11:1.0e-05,ewbeTDb1pjDmuoslmQkLNHS2DmU__Bacillus_thuringiensis_IBL200:0.00295)18:3.0e-05,8X5NL0wMQVSHP9k6d8J2s6G51bE__Bacillus_thuringiensis_HD-789:0.00292)21,(Tx15dDyqlpOyAgSvCFh4rmG/gNE__Bacillus_cereus_Rock1-15:0.00014,vc2z3HdIKa/mcslB/013zoWNjEY__Bacillus_cereus_B4264:0.00282)52:0.00292)76:0.00317,(8c4/65tbqqTFw1wa+MzWcaW3D0E__Bacillus_thuringiensis_serovar_pulsiensis_BGSC_4CC1:0.00275,(vnCOxp/mq44fHGDC+OXb+qHbNKo__Bacillus_thuringiensis_serovar_andalousiensis_BGSC_4AW1:0.00587,(Dy0z+psZEbCxAAvQK23ETUkHK/Q__Bacillus_cereus_95/8201,((EWS5ivHmOL6NOOtFCivwJ32x0Tc__Bacillus_cereus_BGSC_6E1,ya+jNvCwW6UkdF82OCLlua0Tqs8__Bacillus_cereus_03BB102)58:0.00292,(JLQIyFZQltr3tuhM1wuz8WmT+IU__Bacillus_cereus_E33L,(+LjlGtYeMTYkuSwj9uOJ9mLv+jE__Bacillus_thuringiensis_serovar_konkukian_str._97-27:0.00291,(AJmoQea5oxqVcU8nkiE5DDiFS8w__Bacillus_anthracis_str._Sterne:0.00291,cwdGqLNdbG/3N+xGfiKjX2JaVLQ__Bacillus_cereus_biovar_anthracis_str._CI:0.00291))34:2.0e-05)35:1.0e-05)50:3.0e-05)17:2.0e-05)33:0.00017)41:0.00255)52:0.002)54:0.00111)50:0.01994)100:0.03294)100:0.01685)86:0.00417)34:0.02062)66:0.06983)100:0.03004)76:0.28352);",
  "strict_consensus": {
    "kingdom": "Mixed",
    "kingdom_outgroup": 0,
    "phylum": "Mixed",
    "phylum_outgroup": 0,
    "class": "Mixed",
    "class_outgroup": 0,
    "order": "Mixed",
    "order_outgroup": 0,
    "family": "Mixed",
    "family_outgroup": 0,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "relaxed_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Firmicutes",
    "phylum_outgroup": 0,
    "class": "Bacilli",
    "class_outgroup": 0,
    "order": "Bacillales",
    "order_outgroup": 0,
    "family": "Bacillaceae",
    "family_outgroup": 0,
    "genus": "Bacillus",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "relaxed_taxon_id": 55087,
  "relaxed_taxon": "Bacillus"
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269554259.1",
  "tree": "(JCVI_PEP_metagenomic.orf.1134269554259.1,(njoEFCIPUMAGKRuutt33XhuFeVc__Nitrospira_defluvii:0.31949,((iDas40dT4iYHAIcnTc8965/21pw__Marinobacter_sp._ELB17:0.0648,4/CozTCKwJgd+lyl1EIzIRVUF1s__Moritella_sp._PE36:0.0682)100:0.20521,ff7mbz03d4y9SsLpQa/7xV4c4/8__Fibrobacter_succinogenes_subsp._succinogenes_S85:0.25381)74:0.03807):0.32337);",
  "strict_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Mixed",
    "phylum_outgroup": 0,
    "class": "Mixed",
    "class_outgroup": 0,
    "order": "Mixed",
    "order_outgroup": 0,
    "family": "Mixed",
    "family_outgroup": 0,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "relaxed_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Mixed",
    "phylum_outgroup": 0,
    "class": "Mixed",
    "class_outgroup": 0,
    "order": "Mixed",
    "order_outgroup": 0,
    "family": "Mixed",
    "family_outgroup": 0,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "strict_taxon_id": 629395,
  "strict_taxon": "Bacteria",
  "relaxed_taxon_id": 629395,
  "relaxed_taxon": "Bacteria"
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269554271.1",
  "tree": "((((pV5n9YVsfHOmmU0Uwn9N+RxFoJo__Streptomyces_sp._SirexAA-E:0.30726,wyY5zpHtjP6EfOE0iz+MPmrLNwc__Polaribacter_irgensii_23-P:0.33336)43:0.00746,ESOVA4hymQrJBzPUUWONFLTf0g8__Clostridium_hathewayi_DSM_13479:0.32813)94:0.02927,(((((SHpQJHdB3rRpBwRSPRcM3y3xFUM__Mucilaginibacter_paludis_DSM_18603:0.22016,yb9ZNVWkJRRbkfH6g0rXlJ2NBg0__Pedobacter_saltans_DSM_12145:0.23076)92:0.03975,8Sv0EfwtRfLtkvq2b6dek3xoPyw__SAR324_cluster_bacterium_JCVI-SC_AAA005:0.2307)82:0.02973,(RPZU6vCUgwokpxHDJlH0HeX2AvY__Spirochaeta_smaragdinae_DSM_11293:0.2809,3uZPKcQPdAmqYTAul8ujCF1nTX8__Sinorhizobium_meliloti_BL225C:0.27197)69:0.02404)79:0.01886,(((((VUqnk7FqfCO5TTEcWjdHWvtDJFM__Paenibacillus_mucilaginosus_K02:0.17778,0/auag4vZ77wQZkj5pUuH0bwWSw__Paenibacillus_curdlanolyticus_YK9:0.17716)72:0.02204,(bL+eTbx6V6rgWNneU9HVIA9HFiY__Paenibacillus_polymyxa_E681:0.20144,xPza+Xv9HDqKBTyVhX2Y8BAZTcE__Paenibacillus_sp._Y412MC10:0.20997)63:0.01087)69:0.01735,(tQEFxgHx9P87PBzJEXePx4nlNBg__Alicyclobacillus_acidocaldarius_LAA1:0.02336,foQ17YXkm497KN5L7Ae0C41i9Aw__Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446:0.01907)100:0.19002)62:0.01022,726iIspfSIDJlzyFUm4V1vnmgCg__Bacillus_clausii_KSM-K16:0.23545)97:0.02864,UEzRTpc7Qb5vRg18GwTvYBCUv7o__Paenibacillus_larvae_subsp._larvae_B-3650:0.22255)99:0.04077)92:0.01705,L7NWZsHSeraOHij9FzBxO4cZsSo__Arthrobacter_phenanthrenivorans_Sphe3:0.32951)73:0.01226)100:0.0011900000000000244,((((((iCI0jJgdSm3Uy/zX9Iihydefod0__Roseiflexus_sp._RS-1:0.02861,5f8SfgTDz1t8N4e9QgsIrWTHsSg__Roseiflexus_castenholzii_DSM_13941:0.02773)100:0.27982,(UxKslZEz7ZU+IM6kDuNoUhx6LRg__Blautia_hydrogenotrophica_DSM_10507:0.32172,(((qRcAhUZFko6mlW6rgEXfdZcsYmo__Thermoanaerobacter_brockii_subsp._finnii_Ako-1:0.00645,IZJLfBFfRq5A+eh6dZhydZsOei0__Thermoanaerobacter_ethanolicus_CCSD1:0.00788)77:0.01005,(TrUAfoewVjuhB63LA74wFi3huzA__Thermoanaerobacter_sp._X513:0.01248,Wjqx+71EDSja1QjKveYgu09NN4w__Thermoanaerobacter_wiegelii_Rt8.B1:0.0133)28:0.00284)17:0.0004,(nFbSJPVxO0lXRO+uoUsWDIkyI2o__Thermoanaerobacter_italicus_Ab9:0.0103,LTuD60r/ngu0jSeeePuu5rbzOcA__Thermoanaerobacter_mathranii_subsp._mathranii_str._A3:0.01262)65:0.00604)100:0.28976)71:0.01432)58:0.01649,((hNBdBl262eIu2lO170OJ/PjaI5Q__Roseiflexus_castenholzii_DSM_13941:0.03707,1biqZ8qVynWdJ4ndIfaPsGsqZ2w__Roseiflexus_sp._RS-1:0.03597)100:0.27242,aZtu1xncTUQhRqSCItQvCU+AqDI__Thermobaculum_terrenum_ATCC_BAA-798:0.30935)57:0.00983)73:0.01766,aqAL4dgQPY0fk98rMYRRCQDOcI4__Gemmatimonas_aurantiaca_T-27:0.36206)72:0.0183,(((((xaEaIZA7f+jcnCGpGCyQi+MdgVg__Caldicellulosiruptor_bescii_DSM_6725:0.0167,wCN6JEJCjridaGtGGKl0rJCLNxM__Caldicellulosiruptor_kronotskyensis_2002:0.015)70:0.00699,pKyVlY3bUl2DeKMcI/SeBpSaNTI__Caldicellulosiruptor_hydrothermalis_108:0.02471)45:0.00383,FebOc11V8d74gCMU3mi8G0q5Jec__Caldicellulosiruptor_kristjanssonii_177R1B:0.0221)40:0.00577,EGZ856tq7Y7ErEP3HCfiEcIi790__Caldicellulosiruptor_saccharolyticus_DSM_8903:0.03241)30:0.00442,(dBMR5xrDPRF2H53NRuhVkdwhXbY__Caldicellulosiruptor_obsidiansis_OB47:0.02421,bq51AOxcwqcAczwIkoSaLDj0uhA__Caldicellulosiruptor_owensensis_OL:0.03343)44:0.00963)100:0.3199)71:0.01106,(((MBRZKqYJKR+vKsTGwXTwR9KKpuU__'Nostoc_azollae'_0708:0.37663,JtiA1XctWYCeoosc+VrhsAuXkcw__Ktedonobacter_racemifer_SOSP1-21_DSM_44963:0.34858)54:0.01086,(ynjyaDyR5dH+gr4toNl6c4zivIw__SAR324_cluster_bacterium_JCVI-SC_AAA005:0.34104,j4HzLYFimAeMakhlRLAi6QMv3EI__SAR324_cluster_bacterium_JCVI-SC_AAA005:0.34168)79:0.02276)43:0.00692,(((((/Tx+7X0sgUBNbU6n06BhaAHOFno__Alexandrium_tamarense:0.2773,JCVI_PEP_metagenomic.orf.1134269554271.1:0.22538)56:0.02127,(j/aJuEL99vWQGH81v0rAnNzNScg__Verrucomicrobiales_DG1235:0.27114,fs+gUgAYy7U1gKpeta4OJ8IYqUI__Coraliomargarita_akajimensis_DSM_45221:0.28638)66:0.01411)25:0.00843,zHeBSk5zI1y7c/5DuR3XR0K9U1M__Coccomyxa_subellipsoidea:0.30654)45:0.00767,((AW4jhqjdBndkTzDPQpVPrgYXOIs__Planctomyces_brasiliensis_DSM_5305:0.20546,K9QkORxkrN2SAjBB7Qy148KVFaY__Planctomyces_maris_DSM_8797:0.198)92:0.03822,r+X+QfHyA4GdPrwNpw/4alFcd4g__Planctomyces_limnophilus_DSM_3776:0.22979)100:0.07483)77:0.01503,+URtAMtxg9kYBwJ9hHTAgBqCfeE__Verrucomicrobium_spinosum_DSM_4136:0.33023)100:0.06942)52:0.00666):0.04071999999999998);",
  "strict_consensus": {
    "kingdom": "Eukaryota",
    "kingdom_outgroup": 1,
    "phylum": "Alveolata",
    "phylum_outgroup": 1,
    "class": "Dinophyta",
    "class_outgroup": 1,
    "order": "Dinophyceae",
    "order_outgroup": 1,
    "family": "Dinophyceae_X",
    "family_outgroup": 1,
    "genus": "Dinophyceae_XX",
    "genus_outgroup": 1,
    "species": "Alexandrium",
    "species_outgroup": 1
  },
  "relaxed_consensus": {
    "kingdom": "Eukaryota",
    "kingdom_outgroup": 1,
    "phylum": "Alveolata",
    "phylum_outgroup": 1,
    "class": "Dinophyta",
    "class_outgroup": 1,
    "order": "Dinophyceae",
    "order_outgroup": 1,
    "family": "Dinophyceae_X",
    "family_outgroup": 1,
    "genus": "Dinophyceae_XX",
    "genus_outgroup": 1,
    "species": "Alexandrium",
    "species_outgroup": 1
  },
  "strict_taxon_id": 2924,
  "strict_taxon": "Alexandrium",
  "relaxed_taxon_id": 2924,
  "relaxed_taxon": "Alexandrium",
  "bootstrap": 56
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269554313.1",
  "tree": "NO_TREE",
  "strict_consensus": {
    "kingdom": "NO_TREE",
    "phylum": "NO_TREE",
    "class": "NO_TREE",
    "order": "NO_TREE",
    "family": "NO_TREE",
    "genus": "NO_TREE",
    "species": "NO_TREE"
  },
  "relaxed_consensus": {
    "kingdom": "NO_TREE",
    "phylum": "NO_TREE",
    "class": "NO_TREE",
    "order": "NO_TREE",
    "family": "NO_TREE",
    "genus": "NO_TREE",
    "species": "NO_TREE"
  }
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269554329.1",
  "tree": "((((igDwfjiQ5LGvbHQX+92jBgJwzKA__Sulfobacillus_acidophilus_TPY:0.22352,XgB/QOtior1I2cZohLxfTmwTEDs__Selenomonas_sputigena_ATCC_35185:0.2073)68:0.02343,(uK24SWFdBuWAVw9Ukth+Om8mOEM__Pseudomonas_putida_GB-1:0.02259,(E75vc7NCGgggDHT3gJyBmyZc/5k__Pseudomonas_putida_BIRD-1:0.00133,1xsBZJjqZ7ce3fXovdbJFRT6AFA__Pseudomonas_putida_F1:0.00178)100:0.01947)100:0.22274)33:0.00967,(TMdUzekmJO2qvoCr6gaLomIPj/U__Lawsonia_intracellularis_PHE/MN1-00:0.26267,(((nndVKUGfMVZl87gdSWdMU8a2NiI__Starkeya_novella_DSM_506:0.21115,JexRJ76n2qTNAnEt+yJ6vwZrYCg__Ochrobactrum_intermedium_LMG_3301:0.2017)48:0.00579,wy4zpjlOZ8tP8zoDP76Ml1RcpUU__Rhodobacter_sp._SW2:0.20625)98:0.03922,(rl98gcDXF0RCJy6nkg1hpIzYB8M__Phenylobacterium_zucineum_HLK1:0.23712,JCVI_PEP_metagenomic.orf.1134269554329.1:0.27416)38:0.01407)33:0.00847)24:0.00526)100:0.04616999999999999,(((((S5hjiJof/Rr/SZAg1MDE33whwxM__Psychrobacter_cryohalolentis_K5:0.20334,I5BxZYifXcaqQotUS2SpRmoS7RE__Moraxella_catarrhalis_RH4:0.19118)94:0.0338,(((lvybLG7s4JidJn0GwfZ7z02JTp4__Oryza_sativa_japonica_cultivar-group_mitochondrial,((BQlybzh6UvPhRWsEdXzfWo5AOmw__Oryza_sativa_japonica_cultivar-group_mitochondrial:0.0013,wdAb8UwH7JQIIJZ3aWlhduxkQi0__Oryza_glaberrima:0.00152)75:0.00429,shG1Z6Tde3PYnA7169tKDQZgdfk__Oryza_sativa_japonica_cultivar-group_mitochondrial:0.00288)63:0.00031)100:0.03664,ZADZpjE05rw+y6K43BIyffzYKvk__Brachypodium_distachyon:0.05018)83:0.0099,(((scWq/xQwPdv2UwSK9gGlGO0flZU__Zea_mays,I1z2PRyBcOjNRBHY1WJrYuX7N1Y__Zea_mays)55,jhqWlgrxohosRH9o3EOeTHfiAS8__Zea_mays)72:0.00787,j5rgVAXVcWK+PGK/w7D8AHul/3Q__Zea_mays:0.00197)100:0.05185)100:0.16042)44:0.00792,SsMeOK0ObHAtDr15EMXMjYpd5Ok__Collimonas_fungivorans_Ter331:0.23541)36:0.00337,fdGkeYkoZB6kcpJwXRbW0y14+QY__Pristionchus_pacificus:0.23985)99:0.03082,(m4weTHP1QqNPg3v3jKQh5T3I7Xw__Haliscomenobacter_hydrossis_DSM_1100:0.24301,(XiK4qA2EHzTb6yMUKByiR8xI2FM__Spirosoma_linguale_DSM_74:0.22362,(GJGczEMjvEOM2i+A1NJUY0fLhIQ__Weeksella_virosa_DSM_16922:0.22534,(((((((((4QWMyxkwPHCs80lo6kcjEW7MMvg__Capnocytophaga_sputigena_Capno_ATCC_33612:0.01946,(n2MaKYta6KpVo0p1Vss2EZfmYl8__Capnocytophaga_ochracea_F0287:0.00397,jDoZhNap1OG5fJSD+DCVHGNnrNI__Capnocytophaga_ochracea_DSM_7271:0.00189)100:0.01866)100:0.05098,I50lApzetdKn8BPcr7um3BGwxlk__Capnocytophaga_canimorsus_Cc5:0.07114)100:0.03482,Qs67QnZnd59+Bv2WShg/n8+JS+s__Flavobacteriales_bacterium_ALC-1:0.11362)49:0.01085,(IDpC38br2qJA1rZr+fz/gbfuWBY__Krokinobacter_sp._4H-3-7-5:0.12305,TUYwrfgi6J7SOYjrzGcP+dFZyHA__Dokdonia_donghaensis_MED134:0.11364)83:0.02069)40:0.01335,0XqWDS+a2qN7F0T4KbuH+dvp4cc__Lacinutrix_sp._5H-3-7-4:0.14339)70:0.01051,bk9Gip8N3t8zB0boLLDws6Kb3lc__Psychroflexus_torquis_ATCC_700755:0.16537)29:0.00558,NPOB20tThfOPFVkjpZsHHbN/rb0__Capnocytophaga_gingivalis_ATCC_33624:0.16737)58:0.01087,(3Hcqa5QT643oD1L7ug0szuO9Nc8__Polaribacter_sp._MED152:0.1236,RcRzxmmphmISYRpm7GbF0N20+VY__Polaribacter_irgensii_23-P:0.10924)100:0.06291)97:0.02582,(((((((A2k3rK8y7Q0Bz8iDgOy9yYLcN6E__Bacteroides_eggerthii_DSM_20697:0.01571,Vc0Ti6S1aGWOPuCHCqzzk3gkKyw__Bacteroides_stercoris_ATCC_43183:0.01045)58:0.00658,xGy52W/PyACUBFvtEmCEnLc9Ats__Bacteroides_sp._4_1_36:0.01958)42:0.00142,(HTgvJbR7fXSGezzq1SWKOUDVYZg__Bacteroides_intestinalis_341_DSM_17393:0.00895,+p1eA0D9ma+jxSwALBP7Of1jFFk__Bacteroides_cellulosilyticus_DSM_14838:0.0114)97:0.01384)54:0.00506,07a0c4NkNw34KBthFaj9iSBg3lQ__Bacteroides_thetaiotaomicron_VPI-5482:0.03237)100:0.05013,15ZUOwj9Q7sliYt9684mMILrIkM__Bacteroides_coprophilus_DSM_18228_=_JCM_13818:0.07687)100:0.08889,zFwCzB7inZmNBALHmqXhKP0I8rk__Odoribacter_splanchnicus_DSM_220712:0.17149)90:0.01851,(((LZ+kmccclvhNS5SS1KMk81NQECM__Sphingobacterium_spiritivorum_ATCC_33861:0.00032,b72xXDOroBBNabThrBUe+KdKGJE__Sphingobacterium_spiritivorum_ATCC_33300:0.0026)100:0.12663,Nm5o7ve4qimLTwtsERW4f3yExIg__Sphingobacterium_sp._21:0.11899)72:0.01111,CRLxuMPLt6O3WYu3XobGAbBClEI__Pedobacter_heparinus_DSM_2366:0.13895)100:0.06951)65:0.01083):0.00694)42:0.00846)61:0.01952)91:0.03102)98:0.03083000000000001);",
  "strict_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Proteobacteria",
    "phylum_outgroup": 0,
    "class": "Alphaproteobacteria",
    "class_outgroup": 0,
    "order": "Caulobacterales",
    "order_outgroup": 1,
    "family": "Caulobacteraceae",
    "family_outgroup": 1,
    "genus": "Phenylobacterium",
    "genus_outgroup": 1,
    "species": "Phenylobacterium zucineum HLK1",
    "species_outgroup": 1
  },
  "relaxed_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Proteobacteria",
    "phylum_outgroup": 0,
    "class": "Alphaproteobacteria",
    "class_outgroup": 0,
    "order": "Caulobacterales",
    "order_outgroup": 1,
    "family": "Caulobacteraceae",
    "family_outgroup": 1,
    "genus": "Phenylobacterium",
    "genus_outgroup": 1,
    "species": "Phenylobacterium zucineum HLK1",
    "species_outgroup": 1
  },
  "strict_taxon_id": 450851,
  "strict_taxon": "Phenylobacterium zucineum HLK1",
  "relaxed_taxon_id": 450851,
  "relaxed_taxon": "Phenylobacterium zucineum HLK1",
  "bootstrap": 38
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269554347.1",
  "tree": "((((Uuo83T13VRepnYwG6lfxFumDYTo__Verrucomicrobiales_DG1235:0.28421,dCML2+NN4kYW93zjWAPcaATreT8__Rhodothermus_marinus_DSM_4252:0.23858)100:0.05485,((((ZOhQ3r1r8605olN1PgipLZ9W/0U__Pelodictyon_phaeoclathratiforme_BU-1:0.08811,dqb0RHi0bAPazgsrPSpUdPj86Us__Chlorobium_ferrooxidans_DSM_13031:0.08174)98:0.02323,DHzytbeF/oEZsFz7Ysq2yPahG60__Chlorobium_phaeobacteroides_DSM_266:0.11594)61:0.00804,OTKD9X6rKK9mDBTdrpoI2TQ943I__Chlorobium_luteolum_DSM_273:0.12064)100:0.07279,a/FElelnLwHDjqDc7KvF82yTE08__Chloroherpeton_thalassium_ATCC_35110:0.18998)100:0.11803)51:0.00908,((((PGxmtN7VDzJCFc8bpFxrREJNqQU__Amycolicicoccus_subflavus_DQS3-9A1:0.25791,((W8gmz4qSJ3146cCasBVGo4D2m/M__Corynebacterium_efficiens_YS-314_DSM_44549,bufRlo4Si1uJvbY00zow6B5XJq0__Corynebacterium_efficiens_YS-314_DSM_44549)100:0.11958,b5DxV+sJLAMBrWDqy2QgGdBIB3w__Corynebacterium_glutamicum_R:0.11775)100:0.13708)49:0.00632,+FqTLYtZS4r95TbBywspjJ+RslM__Pseudonocardia_sp._P1:0.22911)100:0.03785,viDMHeM4GIlmyBT9g2O8uhyrDig__Actinomyces_sp._oral_taxon_848_str._F0332:0.29227)100:0.06008,pSRmrcn1MM3pOuNTgyKULXDonho__Rickettsiales_HIMB114:0.40151)47:0.01464)37:0.004769999999999941,(((((8NXNiokANCsRO6B7XhI8zquRdcw__Rubrobacter_xylanophilus_DSM_9941:0.18943,zgBqY+cHXQ7RYlRg4HVQO0Rih9A__Rubrobacter_xylanophilus_DSM_9941:0.20688)100:0.11671,(fEJXWtrdo3p2fLP4i9ebsztu6UM__Geobacter_sulfurreducens_PCA:0.00134,CJZ4Yw4LYiiqdEI4oD2eL/0IKxg__Geobacter_sulfurreducens_KN400:0.00111)100:0.31835)40:0.01032,((((lvszCU1xPPIld5KwzC4DNqOf2T4__Lysinibacillus_sphaericus_C3-41:0.00782,6V4UR0ZQ0Xq2GjZwr7E53hINM10__Bacillus_sp._B14905:0.00809)100:0.18594,CoUI2QDss7yeqi59sdIfSzTZ2Oo__Bacillus_sp._m3-13:0.18546)72:0.02347,(mb6DJop2uu3oiGQYNe9qr8h3BFo__Paenibacillus_mucilaginosus_KNP414:0.18821,O0Cx9KAfGdNaMMEQanWKEcPgNtY__Geobacillus_thermoglucosidasius_C56-YS93:0.19751)73:0.01274)100:0.05567,d+6XEOsI2JQfAiG0QRc401uh2Cc__Macrococcus_caseolyticus_JCSC5402:0.28474)100:0.0863)27:0.00398,JCVI_PEP_metagenomic.orf.1134269554347.1:0.33604)69:0.02533,((((qmAM/NPwbVdGKxLSVR5G1/7DRDY__Ramlibacter_tataouinensis_TTB310:0.08811,E4g9M2F8wuJIE6nnyfBFHHTHKi4__Polaromonas_sp._JS666:0.08972)100:0.14111,NFi475jl0oRfRMBU5D54IJHoFq4__Lautropia_mirabilis_ATCC_51599:0.24391)100:0.05671,LAw5sqzubFCJ5s4+kq9za3UobFY__Marine_gamma_proteobacterium_HTCC2148:0.28976)100:0.07387,(((((r7EuwUgGF3sO9s1MKCWPEJz68oY__Arthrospira_sp._PCC_8005:0.00952,LOot0u6CZXy+zXrjnsjD4IfO/EM__Arthrospira_maxima_CS-328:0.01075)100:0.01308,efYqCDkchsoiUQNGz4zfEnlvvU8__Arthrospira_platensis_NIES-39:0.02295)100:0.11081,6jmBLxBHKD/g+bAvCxvxu0Ptvh4__Lyngbya_sp._PCC_8106:0.14254)100:0.15815,XSmgdlOsRNz+620PHKCe5kPxwk8__Kuenenia_stuttgartiensis:0.34196)89:0.01997,(8MR4926wJgiK3IZBF0oH03pwp20__Thermobispora_bispora_DSM_43833:0.22429,((EtMV3pnUSH3GqsrF6jqCjFNbsvA__Streptomyces_sp._SPB74:0.02972,pLJcV0hTLgZ3REALy2jul3X5fTs__Streptomyces_sp._SPB78:0.02475)100:0.08132,(((((mToxp2q5LAiUcNXbPzXDrzsHk8s__Streptomyces_roseosporus_NRRL_11379:0.03292,pD/PPpVe3kL5ZYY1jFC5dwi9cts__Streptomyces_griseus_subsp._griseus_NBRC_13350:0.03273)100:0.03707,O55ONyqgKu1SElFnS0Q4sGW0w6o__Streptomyces_sp._SirexAA-E:0.08011)96:0.02089,(oFkZxDDS0HS+uC3HQpuFVmWBiv4__Streptomyces_pristinaespiralis_ATCC_25486:0.07467,Gfh7ou3uKAoZi5PqlDZ6iUZ7APQ__Streptomyces_clavuligerus_ATCC_27064:0.1051)65:0.01128)88:0.01526,hiEkVWPB5KroeHymPBAUxCiQXQo__Streptomyces_sp._Mg1:0.0985)80:0.01102,(3zhSv2QZeEj3ZAZgkN01dNy7shY__Streptomyces_albus_J1074:0.10581,(lv/yXakDo9K+tLbChqs+LchRV5o__Streptomyces_avermitilis_MA-4680:0.06741,(fSA8OOvwAfUAmc9AaUbTMeUxHvY__Streptomyces_turgidiscabies_Car8:0.08087,((VcfEoGsXP+9ko2ESt/LQeyZZE+c__Streptomyces_sviceus_ATCC_29083:0.05453,viqH1a4ihqsNbe5eVyA5Mcvuf9o__Streptomyces_ipomoeae_91-03:0.05412)39:0.00421,(bKEE6OoCS48wb1J3lW2qiJMqpMI__Streptomyces_ghanaensis_ATCC_14672:0.04954,bn7c7D0BPAekhFWweXtQvP2TsjA__Streptomyces_viridochromogenes_DSM_40736:0.05313)56:0.00732):0.0041)26:0.00807)61:0.02134)99:0.00734)70:0.01636)86:0.10484)100:0.11149)100:0.02696)98:0.0109)52:0.001830000000000059);",
  "strict_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Mixed",
    "phylum_outgroup": 0,
    "class": "Mixed",
    "class_outgroup": 0,
    "order": "Mixed",
    "order_outgroup": 0,
    "family": "Mixed",
    "family_outgroup": 0,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "relaxed_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Firmicutes",
    "phylum_outgroup": 1,
    "class": "Bacilli",
    "class_outgroup": 1,
    "order": "Bacillales",
    "order_outgroup": 1,
    "family": "Mixed",
    "family_outgroup": 0,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "strict_taxon_id": 629395,
  "strict_taxon": "Bacteria",
  "relaxed_taxon_id": 1385,
  "relaxed_taxon": "Bacillales",
  "bootstrap": 69
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269554485.1",
  "tree": "(((((((((((xQ0aElgQG5dVkR+GocXVvIOM72w__Shewanella_oneidensis_MR-1:0.04221,xIITuwrJ93GbH55Kujfrk8zIbmc__Vibrio_vulnificus_MO6-24/O:0.04229)95:0.01505,/U8PFqURMkYeVUh7npQm5kRs9m4__Shigella_sonnei_Ss046:0.06711)56:0.00762,(cNqruI8DxFV6qEShjD/IUs9LWCM__Vibrio_sp._Ex25:0.05298,KjjJx87DAo9bSq5cCnERKnrcVaY__Shewanella_woodyi_ATCC_51908:0.06204)80:0.01087)100:0.06642,VMuQDpgzibaSF+VcKW8CTD2jUAU__Colwellia_psychrerythraea_34H:0.14939)30:0.00188,fe7CmWTguDyFuZvVePoduknTHls__Shewanella_piezotolerans_WP3:0.13104)82:0.01802,sI314tKYpNBPhG3VsfkyGORSLag__Acinetobacter_sp._ADP1:0.15925)54:0.00263,qwHGWR92632ad8ywE1pkZqs3Pww__Legionella_drancourtii_LLAP12:0.17216)77:0.01185,f7FwKjqaf4oGt3CREmjgqj1f1BY__Intrasporangium_calvum_DSM_43043:0.1747)62:0.00679,/qfpuQUFH7r59oU3Q0tTZndTtbM__Halothiobacillus_neapolitanus_c2:0.15963)100:0.03584,(((((((v8RCeP0WMG40N4QAHM7jCCVmyvM__Variovorax_paradoxus_EPS:0.08851,Hmqj1FN36PV+39wUQAAS7N55bII__Variovorax_paradoxus_S110:0.0739)86:0.0152,Tn6fzxNEp7tsAme/SIv+5Lb5ea8__Polaromonas_naphthalenivorans_CJ2:0.09572)52:0.00314,VCXY+eqCcwpke8Q50XM3K8EWG1U__Acidovorax_citrulli_AAC00-1:0.10461)95:0.02673,((WxVZbqxJesbzyNmioS+Tc1rFJjM__Acinetobacter_oleivorans_DR1:0.0126,9BQhfzqlV1vujZ0ab+n0h5gu0/k__Acinetobacter_calcoaceticus_PHEA-2:0.01293)98:0.01601,(w/q8/3kpthbzuruzMrZD3HH4CTA__Acinetobacter_baumannii_ATCC_17978,IynGjd8FmpRwys6zqhAO6ayU+KA__Acinetobacter_baumannii_ATCC_19606_=_CIP_70.34:0.0029)100:0.01849)100:0.08081)11:0.00357,(8Kxpv/lEOMA95aUy/DkhHrxMquM__Laribacter_hongkongensis_HLHK9:0.12992,JCVI_PEP_metagenomic.orf.1134269554485.1:0.12934)49:0.01262)44:0.01364,(4LeaVnPxc5B98r6zQxt/kFF3WUM__Actinobacillus_succinogenes_130Z:0.05169,y+HoZRidBdIdEKGgMa50Pwd89DE__Mannheimia_succiniciproducens_MBEL55E:0.05504)100:0.07745)45:0.0135,Gt3b18h039hX7phr+s50i2y0qF8__gamma_proteobacterium_HTCC5015:0.20411)100:0.03426)94:0.006780000000000008,((((((qKn2i8XqdXdJRHd2gMiUsbAR24Y__Desulfovibrio_vulgaris_str._Hildenborough:0.10338,M+EG2V08TepQsVdG3KKVdK9GvMQ__Desulfovibrio_vulgaris_str._'Miyazaki_F':0.10028)93:0.02403,RKk1LU4bpJdlxV8LdOkyQf6KGhI__Bilophila_wadsworthia_3_1_6:0.13064)88:0.01317,((v4++SgmwfU7CINoK/FDjo7yXLHs__Desulfovibrio_sp._3_1_syn3:0.07794,NxDUqD9emXpWihFbuoeramuR/ok__Desulfovibrio_piger_ATCC_29098:0.08054)100:0.06036,3MU/Vb1bD6B88lzTfEpJDzBuWzM__Desulfovibrio_alaskensis_G20:0.15133)46:0.00257)95:0.02079,(m5q1p+hlerdEbkChVFlvqQTLQ5E__Desulfovibrio_aespoeensis_Aspo-2:0.17632,BgnoW8dm5pRZKUIIQ9fyy0P9Lbo__Desulfovibrio_salexigens_DSM_2638:0.17001)95:0.03195)100:0.02318,EA/IuGOxYWZXrwh9UD7GPofQ9o0__Fusobacterium_varium_ATCC_27725:0.24818)17:0.00576,(((((+vUb/w2YGQdwEVKaUsDdCkQCZXE__Thiomonas_intermedia_K12:0.1216,6A/7r/QurYu9PEgmdd89Crvuwxs__Azoarcus_sp._BH72:0.11549)58:0.00438,Y0fPZJ8RplddbUYJTld1Lu/ICKw__Thiobacillus_denitrificans_ATCC_25259:0.13999)80:0.01638,L1oE4FwBXNUb6xrkjfBAgrenBYU__Nitrosospira_multiformis_ATCC_25196:0.157)40:0.00453,K4PbZ9D8Ls5n8TYFHF9VtsG5jP4__Pelomonas_Ikkarae-like:0.15902)100:0.03437,(MJ/SliMyBSIuBnvSTeQGCh6YUB0__Desulfuromonas_acetoxidans_DSM_684:0.20028,(((l7jl/Fn86KYM2m+C2gTYDJYOblk__Reinekea_blandensis_MED297:0.15812,PeqF7V8h5iLMJBnPBfJCu9w92bA__Saccharophagus_degradans_2-40:0.14867)100:0.03165,Lj3eMFh5FPH1oQxTKWwYu9XL8yY__Bacillus_sp._m3-13:0.18789)42:0.00729,(qeHwPm2Pvgo421ltaCDaIZrkgOI__Pseudogulbenkiania_ferrooxidans_2002:0.14346,((dSoFlEWYu0ZjJF8dOCHvUYf6C1Q__Syntrophus_aciditrophicus_SB:0.10453,(WT2ausJZw0vcMfpUwHGfsUT2rLU__Geobacter_sp._M18:0.06641,qal9yhg0S4jQB6646tqdKiH48iY__Geobacter_sp._M18:0.06412)100:0.04983)67:0.00634,(TKKL9nAzyrxvMWdjs+28SIyfjVs__Geobacter_bemidjiensis_Bem:0.1349,(58nEjo2KA7YFAiOF7+PL864NuHs__Geobacter_sulfurreducens_PCA:0.09172,(vxL0oz843fXphUuLfmG4x5jwXWo__Geobacter_metallireducens_GS-15:0.0997,vRAbdpUPfqkcU+UBhC50RFpEMRU__Pelobacter_propionicus_DSM_2379:0.11525)48:0.00525):0.00514)49:0.00891)52:0.02288)100:0.02481)100:0.01069)55:0.00583)10:0.00812)17:0.02234999999999999);",
  "strict_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Proteobacteria",
    "phylum_outgroup": 0,
    "class": "Betaproteobacteria",
    "class_outgroup": 1,
    "order": "Neisseriales",
    "order_outgroup": 1,
    "family": "Neisseriaceae",
    "family_outgroup": 1,
    "genus": "Laribacter",
    "genus_outgroup": 1,
    "species": "Laribacter hongkongensis HLHK9",
    "species_outgroup": 1
  },
  "relaxed_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Proteobacteria",
    "phylum_outgroup": 0,
    "class": "Betaproteobacteria",
    "class_outgroup": 1,
    "order": "Neisseriales",
    "order_outgroup": 1,
    "family": "Neisseriaceae",
    "family_outgroup": 1,
    "genus": "Laribacter",
    "genus_outgroup": 1,
    "species": "Laribacter hongkongensis HLHK9",
    "species_outgroup": 1
  },
  "strict_taxon_id": 557598,
  "strict_taxon": "Laribacter hongkongensis HLHK9",
  "relaxed_taxon_id": 557598,
  "relaxed_taxon": "Laribacter hongkongensis HLHK9",
  "bootstrap": 49
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269554513.1",
  "tree": "(((kwDeUvSTn8TP+Kk0XuaVRjLwKAg__Alkaliphilus_metalliredigens_QYMF:0.19368,YjY6jCJU5f/23Q+YOti7cPN11wI__Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen:0.18018)96:0.0375,(((tARWmepVM88tY3xjy84G7FcbaQ0__Dethiosulfovibrio_peptidovorans_DSM_11002:0.14952,3BlYVhQb3L/nrUKLWUXaCzhnq1I__Jonquetella_anthropi_E3_33_E1:0.14227)100:0.06567,4u1PqKtS1OWw75A4IDnzLM32Udg__Aminobacterium_colombiense_DSM_12261:0.16896)100:0.06478,(((((sTfnXyxY35+MuXEgTSZYzpxKCnc__Helicobacter_pullorum_MIT_98-5489:0.04249,M8v5rK53NRVTnz2s1aMzNTRAVHo__Helicobacter_canadensis_MIT_98-5491_ATCC_700968:0.04226)100:0.04409,S/gAnhNSyoM4sVmvPx4DkGih5tk__Helicobacter_winghamensis_ATCC_BAA-430:0.09574)100:0.08605,d+i8bzP76x840G6f1fbZVMobXpg__Rhizobium_leguminosarum_bv._viciae_3841:0.17321)52:0.01603,5zZtE4rwsmG6XlMuJlCfOKsYKFQ__Desulfovibrio_salexigens_DSM_2638:0.20304)100:0.07342,(((((EivvZNck905/MIawRhDxCg+GwCE__Clostridium_carboxidivorans_P7_P7:0.08367,TtS+dQXNNvPxN9bKUp0q3MZhG34__Clostridium_ljungdahlii_DSM_13528:0.07981)77:0.01392,(9iZrQSMEkDBQLzUt4qiuyMYsvj0__Clostridium_kluyveri_DSM_555,5sxAvAHHBL1j6E4vXDydPwab4hY__Clostridium_kluyveri_NBRC_12016)100:0.10815)97:0.03362,(YBT1Sxs5CvzUyUtEnrABB1MvS28__Clostridium_botulinum_type_C_-_Eklund:0.13291,BMTFquVDH1y4ZOJoDDvrJsKd3jI__Clostridium_tetani_E88:0.11981)51:0.00572)100:0.10037,gXzFiuWyeuSwNJvX0OxSyw2qAOs__Acetohalobium_arabaticum_DSM_5501:0.22255)76:0.01824,AlJR6Jwf67X0Zh3pQhcTRVDoU0k__Desulfitobacterium_hafniense_Y51:0.23625)100:0.05616)100:0.0365)42:0.00255)67:0.006859999999999977,(CrsQmFXA0hrs1v7BoMOAh9+xu0s__Gemmatimonas_aurantiaca_T-27:0.19872,((7dO+7V4h07q/2vlOOSH45ay1b6o__Prochlorococcus_marinus_str._AS9601:0.19956,XklQ/GtDINsu3cGfmAK5AVfME1Q__Prochlorococcus_marinus_str._MIT_9312:0.27834)80:0.0306,(((((sS6e16UwNTtic5TSRYSQZpz2Z68__Xenorhabdus_bovienii_SS-2004:0.03891,0nocgK7ceNcsSdDwFGWQV/m8a64__Xenorhabdus_nematophila_ATCC_19061:0.04132)100:0.03979,(RYuKqCFNG8NXqB1i1gazt70s9lI__Photorhabdus_asymbiotica_subsp._asymbiotica_ATCC_43949:0.03056,0EGwFY1a8fVgVccGivaK6EEKYSA__Photorhabdus_luminescens_subsp._laumondii_TTO1:0.03534)100:0.05548)100:0.03387,((DYAwC+HiHivTxtw/zNCq+CFLUoY__Neisseria_sicca_ATCC_29256:0.02962,cvbyq6G9FamOtwTKmpHSHgnqnBE__Neisseria_mucosa_ATCC_25996:0.02638)100:0.03612,(TVU9szINbAmuF72S3NkE1lIhLag__Neisseria_sp._oral_taxon_014_str._F0314:0.0114,Uh1gXPqNTS/x5nOOyKHCKkoVri8__Neisseria_elongata_subsp._glycolytica_ATCC_29315:0.01145)100:0.03159)100:0.06478)100:0.0406,(((E69Gy2+WvJP8FdvKjkl/oa2xJGI__Herbaspirillum_seropedicae_SmR1:0.1068,JCVI_PEP_metagenomic.orf.1134269554513.1:0.18451)94:0.03222,(Nb6eWKFZrQzMWF+0rFxNHbltXwk__Vibrio_orientalis_CIP_102891_=_ATCC_33934:0.0772,2/R0lmrkk0e5r9SJxbsz8fuqk6w__Vibrio_cholerae_bv_albensis_VL426:0.06731)100:0.0974)60:0.00866,(/ZwAOREFhpY4PD4W+YQfFtFOtp8__Desulfomicrobium_baculatum_DSM_4028:0.13993,1VtCgGCnJvBBAcj42OskLbeYL08__Lawsonia_intracellularis_PHE/MN1-00:0.16579)83:0.01995)36:0.00391)65:0.01294,(((Z8Lc9f3rNHg6OpRuukFT9jW1CEY__Pelomonas_Ikkarae-like,xZEQ4V8LdXggO/PYpRk/5gwlhuI__Pelomonas_Ikkarae-like:0.00901)100:0.12188,VJYLVA0rHAWVSTKqqSUiuhCec+k__gamma_proteobacterium_HTCC5015:0.14636)88:0.02884,((((((b3srsWE77MHj4dr7sjq6MMyFA+c__Bordetella_parapertussis_12822,44Qghg641E8St5c6swdeV/mKNO0__Bordetella_bronchiseptica_RB50)100:0.04255,u9YXm4eiVUQ8BXwEdRsUNfClljI__Bordetella_petrii:0.03861)97:0.01873,nxnrDKWJdSCfuNqLqGa3dYJ3Yoc__Bordetella_avium_197N:0.05351)100:0.07787,(/Dc+KVAaWBq8IoxK8cfV7RkSXcU__Leptothrix_cholodnii_SP-6:0.17142,EdxtajYv/W7HBDR8DvYlI01VJ/4__Lautropia_mirabilis_ATCC_51599:0.17331)61:0.00869)33:0.0051,hUjPvlVDPLfvU2CZgjRsNsBQxFc__Koribacter_versatilis_Ellin345:0.15969)33:0.0047,(((bqikAQzpLklpPiTXnUQXYxHhzMg__Pseudogulbenkiania_ferrooxidans_2002:0.06176,ni/thbk0hyxw5FLDQNGHgfLtcEk__Chromobacterium_violaceum_ATCC_12472:0.05472)100:0.05032,K9zXqfaAG1E/mAJUsnMfYt8jmGo__Accumulibacter_phosphatis_clade_IIA_str._UW-1:0.1244)55:0.01306,(dQEzRdavZIvyTYukh7t5e7XahyA__Nitrobacter_sp._Nb-311A:0.12452,7YR4/PqHV3L82mVSEasNRZd80LI__Nitrococcus_mobilis_Nb-231:0.16079)38:0.00715)30:0.0071):0.00439)16:0.02173)91:0.02538)84:0.04254)91:0.0027500000000000233);",
  "strict_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Proteobacteria",
    "phylum_outgroup": 0,
    "class": "Betaproteobacteria",
    "class_outgroup": 1,
    "order": "Burkholderiales",
    "order_outgroup": 1,
    "family": "Oxalobacteraceae",
    "family_outgroup": 1,
    "genus": "Herbaspirillum",
    "genus_outgroup": 1,
    "species": "Herbaspirillum seropedicae SmR1",
    "species_outgroup": 1
  },
  "relaxed_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Proteobacteria",
    "phylum_outgroup": 0,
    "class": "Betaproteobacteria",
    "class_outgroup": 1,
    "order": "Burkholderiales",
    "order_outgroup": 1,
    "family": "Oxalobacteraceae",
    "family_outgroup": 1,
    "genus": "Herbaspirillum",
    "genus_outgroup": 1,
    "species": "Herbaspirillum seropedicae SmR1",
    "species_outgroup": 1
  },
  "strict_taxon_id": 757424,
  "strict_taxon": "Herbaspirillum seropedicae SmR1",
  "relaxed_taxon_id": 757424,
  "relaxed_taxon": "Herbaspirillum seropedicae SmR1",
  "bootstrap": 94
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269554659.1",
  "tree": "(((((((((((qEKlQ+8U/nz/Vf/CF1hjtbGGs9Q__Haemophilus_phage_Aaphi23:0.00435,L8jIT5YMzaaBBaROZbVa3LlX4Kw__Aggregatibacter_phage_S1249)100:0.07072,(l4YhZvOiKgxl5BvLCKIf5fvvABc__Haemophilus_influenzae_3655,AQ7HqSp91mUX23fzlneYGtv1GoI__Haemophilus_influenzae_PittAA)100:0.04674)100:0.09836,cw16iydxDqh/3cpIFQW4pkrXJ2U__Campylobacter_concisus_13826:0.18486)100:0.06104,oo9M6n51q/8x/Qq2OfzcIYFp414__UDEL_CHESAPEAKE_VIROPLANKTON_SMPL:0.18923)99:0.04019,(JbF+y2MUL/qwNMFPsc07VpaWIbA__Alistipes_putredinis_DSM_17216:0.08341,OcLTiOgcSw3sMj16v4zOOQiQtrQ__Prevotella_sp._oral_taxon_472_str._F0295:0.09306)100:0.22831)55:0.01564,9YynV25G1vSiLoj4hHmjfYGxLRo__Burkholderiales_bacterium_1_1_47:0.27691)43:0.01515,YrOz4ePiz0W/FL91oMZ8ituv/M4__Alteromonas_macleodii_str._'Deep_ecotype':0.31084)36:0.01292,((W4dhvEsRR3dJ7FJCkACLD1LnACU__SDSU_MISSION_BAY_VIRUS_SMPL:0.27157,0xwos2BKkPUupBG8+NnVRDw5wjI__UDEL_CHESAPEAKE_VIROPLANKTON_SMPL:0.25151)97:0.06191,(0JFY2wYoNwVXqP5mDj3jv3l2g8Q__Chelativorans_sp._BNC1,0JFY2wYoNwVXqP5mDj3jv3l2g8Q__Chelativorans_sp._BNC1):0.27193)74:0.03262)43:0.01583,(OYLOdnPttcvo4cjdzjLgb+pppdY__Acetobacter_pasteurianus_IFO_3283-03:0.26562,(q/df49nNuO8/YrdBVrfVEoUGFWg__Granulibacter_bethesdensis_CGDNIH1:0.27953,5vnZQVWuzncEAx2GOi7ZsWT/CAM__Sideroxydans_lithotrophicus_ES-1:0.28463)66:0.01234)100:0.05215)23:0.01009,JCVI_PEP_metagenomic.orf.1134269554659.1:0.29474)24:0.0012900000000000134,((((((DRt+mFOZUu5pmqqe9pldQEmwmAY__Bacillus_cereus_AH676:0.1707,Z0M88Ef8tGXqLK3OwFJUX7saz60__Bacillus_sp._B14905:0.20861)95:0.05642,GY0ftITqammpks36BVKfxNtNTNk__Erysipelothrix_rhusiopathiae_str._Fujisawa:0.26097)15:0.0039,((((4xMidMhM1x15PqkB/Mq9G76CIiI__Geobacillus_thermodenitrificans_NG80-2:0.01812,8qFfL07nOffjjtAeXRZXR4vLKls__Geobacillus_sp._G11MC16:0.01205)100:0.01332,(Mu++EUCncfQVW+heEA4gLK7ENYA__Geobacillus_sp._G11MC16:0.00712,6sRKLXBVyrxTx+1QvMzfuUk7F74__Geobacillus_sp._C56-T3:0.008)100:0.01905)100:0.19611,v4OqEtBw4KNeRaqtgY5G0FhPk1M__Bacillus_cereus_Rock4-2:0.22704)49:0.01067,8lxZ7Eb1Nxl89m0lK/9AOC8qgRY__Bacillus_thuringiensis_HD-789:0.27705)41:0.00743)33:0.01058,(((((((iuNBK7whLojYx1XeX7TI9IcQzt0__Enterococcus_faecalis_Fly1:0.00095,FDHRIvVIVbKLMMl8rg0wh+ZxXgQ__Enterococcus_faecalis_TX0411:0.00114)91:0.00279,ayxxYgmaqTVrHwu0zUN2oI14AmI__Enterococcus_faecalis_S613:0.00349)89:0.00444,RIxWY3bKQOtufPdYqznI/+ELZaI__Enterococcus_faecalis_EnGen0297:0.00811)99:0.01462,(jGEyYFZsKatXFkdLCgbbSSHUBjg__Enterococcus_faecalis_EnGen0311:0.00308,GPvU7FIk+xCxF1+FIiN59IvlA40__Enterococcus_faecalis_V583:0.0032)100:0.01755)100:0.19257,37qs0XCWEQF5yYkav3iHIZ2Knvo__Listeria_innocua_Clip11262:0.20988)66:0.01051,9ZedQ8o/OTl99N/kPqx3r9q9rw0__Lactobacillus_buchneri_NRRL_B-30929:0.23717)45:0.01179,(VH7P8YtuCW4CKCNZ64Eoiq/eUwc__Lactobacillus_crispatus_MV-3A-US:0.02124,/QSF8e5o8+HB4ahI9PMgq+8dhlY__Lactobacillus_crispatus_MV-1A-US:0.01834)100:0.25551)90:0.03324)100:0.03616,(FMRjv5TiCPpNlFjBzdFZ5/Bb/lg__Aeromicrobium_marinum_DSM_15272:0.27483,Ul3ZP/2JwG2BjLi1Qi/oWg3Z6uM__Xylanimonas_cellulosilytica_DSM_15894:0.26968)100:0.05542)98:0.03433,(((Ir6dvRlify9OiJ/XtbkVJeckxpE__Streptomyces_sp._W9:0.18204,5zTCeHsb9WHwVVY9iMFpZy4KtKw__Streptomyces_himastatinicus_ATCC_53653:0.18956)83:0.01197,Ldd4RFR0KH5RuBRb1dosiMj2GIk__Streptomyces_turgidiscabies_Car8:0.19226)100:0.14257,((((wvMDN0z6GuUQIO/qS1BoXUTr14o__Mycobacterium_phage_Rosebush:0.00079,RbLLzPddbLw/dzGDK7UHludv9Qo__Mycobacterium_phage_Qyrzula:0.00098)100:0.19185,nLMfG3NacClVLd3pGiMckzpZYPw__Mycobacterium_phage_Phaedrus:0.20261)100:0.02662,((Xh5vdxgAr4DoaX6yhhP349mUGIo__Mycobacterium_phage_Cooper:0.02269,Hq6JK+uy7QnzkuipKddnOhb70lo__Mycobacterium_phage_Nigel:0.02206)100:0.14396,KkHYQSksbRl9Vee8VZVgf5sCZBE__Mycobacterium_phage_PG1:0.17186)100:0.05486)100:0.08249,LzkuWJ8wwVZDOcjimAYXSYFpA1g__Mycobacterium_marinum_M:0.30864)100:0.06337)97:0.01931):0.0036699999999999866);",
  "strict_consensus": {
    "kingdom": "Mixed",
    "kingdom_outgroup": 0,
    "phylum": "Mixed",
    "phylum_outgroup": 0,
    "class": "Mixed",
    "class_outgroup": 0,
    "order": "Mixed",
    "order_outgroup": 0,
    "family": "Mixed",
    "family_outgroup": 0,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "relaxed_consensus": {
    "kingdom": "Bacteria",
    "kingdom_outgroup": 0,
    "phylum": "Proteobacteria",
    "phylum_outgroup": 1,
    "class": "Mixed",
    "class_outgroup": 0,
    "order": "Mixed",
    "order_outgroup": 0,
    "family": "Mixed",
    "family_outgroup": 0,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "relaxed_taxon_id": 1224,
  "relaxed_taxon": "Proteobacteria",
  "bootstrap": 24
}
{
  "name": "JCVI_PEP_metagenomic.orf.1134269554721.1",
  "tree": "((WAZmiVL9LQvCltbRNAxfiMo69Jg__UDEL_CHESAPEAKE_VIROPLANKTON_SMPL:0.31358,qju+POzlQSrF4M/j8awYMcT0LUQ__Lactobacillus_phage_Lb338-1:0.38187)91:0.003679999999999961,(5bqb4MjUb8JW+UeQi7LlWjLVtT4__Bacillus_phage_SPO1:0.36554,(((JovCjUAoA6RzwlDohOjM4KlgCSQ__Enterobacteria_phage_EPS7:0.01931,(L47HrHP+cQtzmZMfTQsWjZpyBwM__Enterobacteria_phage_T5,L47HrHP+cQtzmZMfTQsWjZpyBwM__Enterobacteria_phage_T5):0.02045)100:0.27134,JCVI_PEP_metagenomic.orf.1134269554721.1:0.21382)100:0.09548,(5wiz2YwyJWGh+B+FNA3gWXH559M__Bacteriovorax_marinus_SJ:0.32506,(((((((((((LEUxjpPHtNBwmAzpxj4Zem34K0A__Eikenella_corrodens_ATCC_23834:0.00689,R0txnCI8/QA54hE/CNOoaSl4ogU__Neisseria_elongata_subsp._glycolytica_ATCC_29315:0.0082)89:0.00461,JueaPdgawVAzJSzXnBan55xJQIo__Neisseria_flavescens_SK114:0.01314)32:0.00058,LGtl5QMlOebRrPHTotUXxuifQaI__Neisseria_polysaccharea_ATCC_43768:0.01394)58:0.00127,ALV8AQiGUBOG702n7MGr/CivQ+w__Neisseria_sp._oral_taxon_014_str._F0314:0.01449)52:0.00265,K+7vz6UUn5yKPmYGcfRBuQFo/vo__Neisseria_sicca_ATCC_29256:0.01858)45:0.00185,uQBzjNgxmrO33z1pIjF2DveIhac__Neisseria_mucosa_ATCC_25996:0.02147)100:0.02962,c7RI8KRSTzqloDvFOEMZ7EqH+HQ__Neisseria_lactamica_020-06:0.05316)100:0.13843,tL3ujqG8pLT4ndLx1BmhpzYyVOw__Pseudogulbenkiania_ferrooxidans_2002:0.18017)100:0.0962,(((((yePV6mQOCpoFa1X6acWCPuvW+As__Bartonella_henselae_str._Houston-1:0.04999,aeOW75UnG2RtdWeWQDi6r8z6yos__Bartonella_quintana_str._Toulouse:0.05021)92:0.01159,(cTeRz6dKNVNM2MzRNeaoP+aqq/E__Bartonella_grahamii_as4aup:0.02762,b2g/2A7Joh5OL47kGNbHwtEuikI__Bartonella_tribocorum_CIP_105476:0.02403)100:0.03205)100:0.09484,(967Y9HF9sxoxDOga8a6Iof7R0q0__Ochrobactrum_intermedium_LMG_3301:0.0351,5XzmJbTY8UQpTYYXCRjko7oli6s__Brucella_melitensis_biovar_Abortus_2308:0.03443)100:0.11498)100:0.03617,b8WNQIq3s8dt+rr6j7e3aBgxmxQ__Rhodopseudomonas_palustris_BisA53:0.20301)100:0.08885,0lJY8P81jE/dTESNANqnHr1i03I__Geobacter_uraniireducens_Rf4:0.25671)58:0.0031)98:0.01528,(((QpLRfM2k5WdQOYtzxkNYtfPqdsc__Cyclobacterium_marinum_DSM_745:0.11252,H7TZw6qL4zw6rZfzN8hA2oOECog__Algoriphagus_sp._PR1:0.11456)100:0.06081,iOVMgIiZjETXfGJmwwJnZn6N48s__Marivirga_tractuosa_DSM_4126:0.17945)95:0.01352,GCCPT0W38FFOurZOALUxAXxMdFk__Leadbetterella_byssophila_DSM_17132:0.19796)100:0.09568)97:0.01638,(((((jpyAcI9olvhG7O3Fr5Z/asDQc1M__Thermoanaerobacter_mathranii_subsp._mathranii_str._A3:0.25041,(jVe/rUjy3A1v2stZj0eVdFsuFhs__Clostridium_ljungdahlii_DSM_13528:0.25305,XTZsXB/f+ENaO27Y98DpuWIlKC8__Clostridium_lentocellum_DSM_5427:0.2598)43:0.01352)81:0.01166,(((H7AnYZ8mBcfewrE4YvmzqqzFAm8__Exiguobacterium_sp._AT1b:0.17181,lM5cTx6gjIpcTxTFkxyeBJL+e6o__Exiguobacterium_sibiricum_255-15:0.16819)100:0.06748,(AAPiwqTo0uA/g3atg3X8XMcNUdQ__Staphylococcus_pseudintermedius_ED99:0.00278,Ij6lx4tc351KvRYk2BltQWfmYCE__Staphylococcus_pseudintermedius_HKU10-03:0.00293)100:0.23822)94:0.01787,(lGVKI7Zvdt2oijNHK0f/wa988qU__Lactobacillus_jensenii_269-3:0.00075,3GRffriCPC2LiHihx2JNqKvTgl8__Lactobacillus_jensenii_SJ-7A-US:0.00038)100:0.25919)100:0.02782)71:0.00817,((((ncTWweuxUIZTwVpi2kixjpxy+Nc__Caldicellulosiruptor_kronotskyensis_2002:0.00739,72eXx2AxujQacfsyB10bPbxVh7A__Caldicellulosiruptor_bescii_DSM_6725:0.00793)91:0.00542,(He7Lg2BccCjz/+eefB9s6GT1q+A__Caldicellulosiruptor_kristjanssonii_177R1B:0.00358,hDIGTa00pwlnxTUEgYtwQLgd0es__Caldicellulosiruptor_lactoaceticus_6A:0.00348)100:0.0103)82:0.0064,1Jcmaw6aA1liOtDqzWUB4W30jmM__Caldicellulosiruptor_hydrothermalis_108:0.02056)100:0.0216,WlJR/5D+0VjrXUgG94VNV850IEs__Caldicellulosiruptor_obsidiansis_OB47:0.04215)100:0.22471)76:0.01362,B07x+z9mjcjgrskb3G1LrKb+9TM__Dictyoglomus_thermophilum_H-6-12:0.27967)54:0.00732,(((xYj2GH6O2vPiMIreTiE6U6V4Z5k__Thermosipho_melanesiensis_BI429:0.20925,da5vZtqAv14/JIrVcZClf81uVtw__Fervidobacterium_nodosum_Rt17-B1:0.22045)98:0.02646,JoRcY9467c0+yCrLRUBy/7Kh11Q__Thermotoga_thermarum_DSM_5069:0.22966)100:0.05331,Tul523ICmUBmlWJAEFxPuBEctlI__Borrelia_turicatae_91E135:0.3126)61:0.0056)42:0.00865):0.00276)47:0.05143)100:0.01617)78:0.02525000000000004);",
  "strict_consensus": {
    "kingdom": "Viruses",
    "kingdom_outgroup": 1,
    "phylum": "dsDNA viruses no RNA stage",
    "phylum_outgroup": 1,
    "class": "Caudovirales",
    "class_outgroup": 1,
    "order": "Siphoviridae",
    "order_outgroup": 1,
    "family": "Mixed",
    "family_outgroup": 0,
    "genus": "Mixed",
    "genus_outgroup": 0,
    "species": "Mixed",
    "species_outgroup": 0
  },
  "relaxed_consensus": {
    "kingdom": "Viruses",
    "kingdom_outgroup": 1,
    "phylum": "dsDNA viruses no RNA stage",
    "phylum_outgroup": 1,
    "class": "Caudovirales",
    "class_outgroup": 1,
    "order": "Siphoviridae",
    "order_outgroup": 1,
    "family": "T5likevirus",
    "family_outgroup": 1,
    "genus": "Enterobacteria_phage_T5_Species",
    "genus_outgroup": 1,
    "species": "Enterobacteria phage T5",
    "species_outgroup": 1
  },
  "strict_taxon_id": 10699,
  "strict_taxon": "Siphoviridae",
  "relaxed_taxon_id": 10726,
  "relaxed_taxon": "Enterobacteria phage T5",
  "bootstrap": 100
}