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/test-data/chr22_5sp.maf

https://bitbucket.org/cistrome/cistrome-harvard/
Unknown | 1814 lines | 1650 code | 164 blank | 0 comment | 0 complexity | 2fba0aa875846904534d084a55e23f2d MD5 | raw file
  1. ##maf version=1
  2. a score=72335.0
  3. s ponAbe2.chr14_random 4420348 101 + 7454900 ggTGAGatgctcactaccttagtgacggcttcaatcgtaccccaaaactcagtatcacacaat------------aaacctgcacatttttatttaatctaaaataaaagttg
  4. s hg18.chr22 14689667 101 + 49691432 ggTGAGatgctcattaccttagtgatggcttcaatcataccccaaaactcagtatcacacgat------------aaacctgcacatttttattcagtctaaaataaaagttg
  5. i hg18.chr22 C 0 C 0
  6. s panTro2.chr14 18511284 101 + 107349158 AGTGAGatgctcactaccttagtgatggcttcaatcataccccaaaactcagtatcacacaat------------aaacctgcacatttttattcaatctaaaataaaagttg
  7. i panTro2.chr14 C 0 C 0
  8. s rheMac2.chr13 136584868 100 + 138028943 -GTGAGatgctcactaacttagtgatggctttaatcataccccaaaactcagtatcacacaat------------aaacttgcacatttttgttcaatctaaaataaaagttg
  9. i rheMac2.chr13 C 0 C 0
  10. s calJac1.Contig8413 25710 112 + 95389 ggtactattcttgcta-cttggcgatggcttcaatcctatcccaaaattcagcatcacacaatataccctgtaacaaacctgcacatctaccccgaatctaaaataaaagttg
  11. i calJac1.Contig8413 N 0 I 1443
  12. a score=23402.0
  13. s ponAbe2.chr14_random 4421542 33 + 7454900 AACACTGACCTAAGTGGATAAACACATGGCAAC
  14. s hg18.chr22 14690862 33 + 49691432 AACGTTGACCTAAGTGGATAAACGCATGGCAAC
  15. i hg18.chr22 C 0 C 0
  16. s panTro2.chr14 18512475 33 + 107349158 AACGTTGACCTAAGTGGATAAACGCATGGCAAC
  17. i panTro2.chr14 C 0 C 0
  18. s rheMac2.chr13 136586050 33 + 138028943 AACATTGACCGAAGTGGATAAATGCATGGCAAT
  19. i rheMac2.chr13 C 0 C 0
  20. s calJac1.Contig8413 27265 33 + 95389 AGCATTGACCTAAGAGAGTAAATGGATGGCAAG
  21. i calJac1.Contig8413 I 1443 N 0
  22. a score=37887.0
  23. s ponAbe2.chr22 13585900 69 + 46535552 ggtcttccggatttctaaaccattttcAAAGAGTAAGTGATTCACATTAAAAAGGCATATTTcagctgc
  24. s rheMac2.chr9 37387610 69 + 133323859 ggtctcctggatttctaaactattttcAAAGAGTAAGCGATTCACATTAAGAAGACATATTTcagttgc
  25. i rheMac2.chr9 C 0 C 0
  26. s panTro2.chr10 27717141 69 + 135001995 GGTCTTCTGGATTTCTAAACCATCTTCAAAGAGTAAGTGATTCACATTAAAAAGACATATTTcggctgc
  27. i panTro2.chr10 I 856 C 0
  28. s hg18.chr22 14865624 69 + 49691432 ggtcttctgggtttctaaaccattttcAAAGAGTAAGTGATTCACATTAAAAAGACATATTTcagctgc
  29. i hg18.chr22 C 0 C 0
  30. s calJac1.Contig7684 73267 52 - 101326 ----------------aaaccatcttcAAA-AGTAAGTAAGTAACATTAAAAAGACATATTTTAgctgc
  31. i calJac1.Contig7684 N 0 C 0
  32. a score=28433.0
  33. s ponAbe2.chr22 13585969 53 + 46535552 tctgcctatagagtagccattccattcttttattcctttaccttcttaataaa
  34. s rheMac2.chr9 37387679 48 + 133323859 tctgcctatggagtagcca-----ttcttttattcctttactttgttaataaa
  35. i rheMac2.chr9 C 0 C 0
  36. s panTro2.chr10 27717210 48 + 135001995 tctgcctatggagtagcca-----ttcttttattcctttactttcttaataaa
  37. i panTro2.chr10 C 0 I 218
  38. s hg18.chr22 14865693 53 + 49691432 tctgcctatggagtagccattccgttcttttattcctttaccttcttaataaa
  39. i hg18.chr22 C 0 C 0
  40. s calJac1.Contig7684 73319 42 - 101326 tctgcctatggagtagcca-----ttcttttattcctttactttctt------
  41. i calJac1.Contig7684 C 0 N 0
  42. a score=31907.0
  43. s ponAbe2.chr22 13601555 113 + 46535552 AAATGTCCTGTTTAGTTTCTGGATACAAGtttttgagttttagttttcctaatctttaaaaagagttaatattagttaggcaccctggctcatgcctgtaatcccagtacttt
  44. s hg18.chr22 14879601 113 + 49691432 AAATGTCCTGTTTAGTTTCTGGATACAAGTTTTTGAGCTTTAGTTTTCCTAATCTTTAAAAAGAGTTAATATTagtcggacagcgtggctcacaattgtaatcccagcacttt
  45. i hg18.chr22 C 0 C 0
  46. s panTro2.chr10 28793519 57 + 135001995 AAAGGTCCAGTTTCATTTCTGGATACAAGtttttgagctttaattttcttaatcttt--------------------------------------------------------
  47. i panTro2.chr10 C 0 C 0
  48. s rheMac2.chr9 37402661 113 + 133323859 AAATGTCCTGTTTAGTTTCTGGATACATGtttttgagctttagttttcctaatctttagaaagaattaatattagttgggcacggtggctcacacctgtaatcccagcacttt
  49. i rheMac2.chr9 C 0 C 0
  50. s calJac1.Contig31 207366 51 + 1545170 AGACGTACTAT--------------------------------------------------------------ggccgggagcggtggctcaagcctgtaatcccagcacttt
  51. i calJac1.Contig31 N 0 C 0
  52. a score=1818.0
  53. s ponAbe2.chr22 13762172 93 + 46535552 AGTTCCTtcctc---aaagtgtggtctgggtcaggccacctgcattagaatccacaggaagggggctgggagaggggt--gctagtta--tttttacagc
  54. s rheMac2.chr10 61844509 88 + 94855758 aatc-----ctc---aaagtgtggtctgggtcaggccaactgcattagaatccataggaagggggctgggagaggggt--gctagtta--tttttacagc
  55. i rheMac2.chr10 I 309 C 0
  56. s panTro2.chr22 16069569 79 + 50165558 aaTCACCTGCTCTGGGAAGTGCAGTTTCTTCCAGCCTACCT---------------------AGGCCAGGAGCAAAGTCAGCTCATCAATTTTTGCCAGC
  57. i panTro2.chr22 C 0 I 185
  58. s hg18.chr22 16061104 79 + 49691432 aaTCACCTGCTCTGGGAAGTGCAGTTTCTTCCAGCCTACCT---------------------AGGCCAGGAGCAAAGTCAGCTCATCAATTTTTGCCAGC
  59. i hg18.chr22 C 0 I 185
  60. s calJac1.Contig6986 119247 53 - 144597 -------tccta---accttgtgatct------gcctgcct----tggcctcccaaa-----gtgctgagattacagg----------------------
  61. i calJac1.Contig6986 N 0 C 0
  62. a score=24071.0
  63. s ponAbe2.chr22 13762515 81 + 46535552 TGCATTCAGGCTACTGAACAGAACTACATTACAGGGAACAAAGGAAGGAGTGAAGTGGAAAACCAT---GGTCCCAGAAAGGAT
  64. s hg18.chr22 16061368 70 + 49691432 TGCACTCAG----------AGAGTTAAA--ATAGAAAACAAGCAACAGATCCAAGTGGAGA--CATGCAGATCACACAAGAGAT
  65. i hg18.chr22 I 185 N 0
  66. s panTro2.chr22 16069833 70 + 50165558 TGCACTCAG----------AGAGTTAAA--ATAGAAAACAAGCAACAGATCCAAGTGGAGA--CATGCAGATCACACAAGAGAT
  67. i panTro2.chr22 I 185 N 0
  68. s rheMac2.chr10 61845162 79 + 94855758 TGCATTCAGGCTACCGAAAAGAAACATT--ATAGGGAACAAAGGAAGGAGGGAACTGGAAAGCCAT---GGTCCCAGAAAGCAC
  69. i rheMac2.chr10 C 0 C 0
  70. s calJac1.Contig6986 119509 79 - 144597 TGCATTTGGGCTACTGAAAAGAAACGTT--ACAGGGAACGAAGGAATGAGGGAAGTGGAAAGCCCT---GGTCCCAGACAGAAT
  71. i calJac1.Contig6986 C 0 C 0
  72. a score=273897.0
  73. s ponAbe2.chr22 13767485 392 + 46535552 agtaaCCTCAGGGGAGCACTCTGTAGACATTTCTGTG-ATCAAACTAATTGTCACTTAT--AATATTACTATACAAggccaggcacaatggctcggctcatgcccgtagttctagcactttgggaggccaaggcgagaggatggcttgagccccagagttcaagaccagcctgggcaacacggcaaaaccccatctc-acaaaaaaatacaaaaaattagctgggcatgatggtgcacacctctagggtgctgacacaggaggattgcttcagctgacacaggaggctgacacaggaggattgcttcagcctgggaggttgagtctgaagtgagccgagattttgccactgcactccagcctagatgatagaatgagaccctgtcttaaaTAG------TAG
  74. s panTro2.chr22 16075328 390 + 50165558 agtaacctcaggggagcactctgtagacatttctgtg-atcaaattaattgtcacttat--aatattactatacaatgccaggcacaATGGCTCggctcatgcctgtagtcctagcactttgggaggccaaggcgagaggacggcttgagccgcagagttcaagaccagcctgggcaacatggcaaaactccatctc-ac-aaaaaatac-aaaaattagctgggcatgatggtgcacacctctagtgtgctgacacaggaggattgcttcagctgacacaggaggctgacacaggaggattgcttcagcctgggaggttgagtctgaagtgagccgagattgtgccactgcactccagcctagatgatagaatgagaccctgtcttaaaTAG------TAA
  75. i panTro2.chr22 C 0 C 0
  76. s rheMac2.chr10 61852204 358 + 94855758 aataacctcaggggagcactctctagacatctgtgtg-accaaactaattgtcacttat--aATATTACTATACAAggccaggcacaa-----cggctcgtgcctgtagtcctagcactttgggaggccaaggcgacaggatggcttgagccccagagttcaagaccagcctgggcaacatggcaacaccccatctctac-aaaaaatac-aaaaattagctgggcgtgatggtgcgtacctctagcgtgctgac----------------------------------acacaggaggattgcttcagcctgggaggttgagtctgcagtgagccgagattgtgccactgcactccagcctagatggtagaatgagaccctgtcttaaatagtaataataa
  77. i rheMac2.chr10 C 0 C 0
  78. s hg18.chr22 16066508 390 + 49691432 agtaacctcaggggggcactctgtagacatttctgtg-accaaattaattgtcacttat--aatattactatacaatgccaggcacaATGGCTCggctcatgcctgtagtcctagcactttgggaggccaaggtgagaggacggcttgagccgcagagttcaagaccagcctgggcaacacggcaaaaccccatctc-ac-aaaaaatac-aaaaattagctgggcatgatggtgcacacctctagtgtgctgacacaggaggattgcttcagctgacacaggaggctgacacaggaggattgcttcagcctgggaggttgagtctgaagtgagccgagattgtgccactgcactccagcctagatgatagaatgagaccctgtcttaaaTAG------TAA
  79. i hg18.chr22 C 0 C 0
  80. s calJac1.Contig6986 125582 350 - 144597 --------------aGCACTCTGTAGACATTTCTGTGAATCAAACTAATGGTCACTTATAAAATATTACTATACAAggccaggtacga-----tggctcatctttgtagtcctagcactttgggaggccaaggcgagaggacggcttgagcccaggagttcaggaccaggctgagcaacatggcaaaaccccatctctac-aaaaaatac-gaaaattagctgggcgtcatgctgcacacctctag----------------------tcccagttactctgagggctgacac--gaagattgcttcatcctgggaggttgaggctgcagtgagccgacattgtgccactgcgctccagcccagatgatagaattagaccctgtcttaaaTGG------TA-
  81. i calJac1.Contig6986 I 5892 I 1
  82. a score=44055.0
  83. s ponAbe2.chr22 13767877 56 + 46535552 TAATAATAATGATACTATACAAGTCTGTTAGGAAGTTGCTGCATCAGGTTTTCAAG
  84. s panTro2.chr22 16075718 53 + 50165558 TAATAATAATGATACTATACAAGTCTGTTAGGAAGTTGCTGCATCAGATTTTC---
  85. i panTro2.chr22 C 0 C 0
  86. s rheMac2.chr10 61852562 56 + 94855758 taataataataataCTATACAAGTCTGTTAGGAAGTTGCTCCAACAGGTTTTCAAG
  87. i rheMac2.chr10 C 0 C 0
  88. s hg18.chr22 16066898 56 + 49691432 TAATAATAATGATACTATACAAGTCTGTTAGGAAGTTGCTGCATCAGATTTTCAAG
  89. i hg18.chr22 C 0 C 0
  90. s calJac1.Contig6986 125933 56 - 144597 TAATAGTAATGATACTATACAAGTCTGTTAGGAAATTGCTCCATCACGTTTTCAAG
  91. i calJac1.Contig6986 I 1 I 315
  92. a score=223423.0
  93. s ponAbe2.chr22 13767933 295 + 46535552 AAGATTTATCTTCCAGCTAGGTTGTCATCACTTCAGAGCTAGGAACTTGTATTCTCTCTGGTCTTATTGAGCATCAGACAAATCTCATTTGCTACAGCAATAGTGTTGCTggctaggcacggtcactcatgcctgtaatcccagcact--------------------------------------------------------ttgggaggctgagatgggcagatcacctaaggtcaggagttcaagaccagcctggccaacatggtgaaa----ccctgtctctactaaaaatacaaaaattagccaggcgtggtggcacatgtctgtaatcccagctactcagaaagctga
  94. s panTro2.chr22 16075771 295 + 50165558 AAGATTTATCTTCCAGCTAGATTGTCATCACTTCAGAGCTAGGAACTTTTATTCTCTCTGGTCTTATTGAGCATCAGACAAATCTCATTTGCTACAGCAATAGTGTTGCTGACTAggcacggtcactcatgcctgtaatctcagcact--------------------------------------------------------ttgggaggccgagatgggcagatctcctgaggtcaggagttcaagaccagcctggccaacatggtgaaa----acctgtctctactaaaaatacaaaaattagccaggcatggtggcacatgtctgtaatcccagctactcagaaagctga
  95. i panTro2.chr22 C 0 C 0
  96. s rheMac2.chr10 61852618 286 + 94855758 AAGATTTATCTTCCAGCTAGATTGTCATCACTTCAGAGCTAGGAACTTTTATTCTCTCTGGTTTTATTGAGCATCAGACAAATCTCATTTGCTACAGCAACAGTGTTGCTggcgaggcgcggtcactcacacctgtaatcccagcact--------------------------------------------------------ttcggaggccgagatgcacagatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaa----ccctgtttctactaaaaatacaa---------aggcgtggtggcacatgtctgtaaccccagctactcagaaggctga
  97. i rheMac2.chr10 C 0 C 0
  98. s hg18.chr22 16066954 295 + 49691432 AAGATTTATCTTCCAGCTAGATTGTCATCACTTCAGAGCTAGGAACTTTTATTCTCTCTGGTTTTATTGAGCATCAGACAAATCTCATTTGCTACAGCAATAGTGTTGCTGACTAggcatggtcactcatgcctgtaatctcagcact--------------------------------------------------------ttgggaggccaagatgggcagatctcctgaggtcaggagttcaagaccagcctggccaacatggtgaaa----ccctgtctctactaaaaatacaaaaattagccaggcatggtggcacatgtctgtaatcccagctactcagaaagctga
  99. i hg18.chr22 C 0 C 0
  100. s calJac1.Contig6986 126304 352 - 144597 aagaTTCATCTTCCAGCAAGATCGTCACCACTTCAGATCTAGGAACTTTTATTCGCTCTGGTCTTACTGAGCATCAGACAAATCTCATTTGCT---GCCATAGAGTTGCTggccaggcgcagcgtctcacgcccgtaatcccagcactttgggaggccgaggtgggggccgggctcagcggctcacgcccgtaatcccagcacgttgggaggccgaggtgggtggattaactgaagtcaggagttcaggaccagcctgatcaagagactgaaaccctccctgtttctactgaaaatacaaagattagccatgcatggtggtacatgcctgtaatcccagctactcagatggctga
  101. i calJac1.Contig6986 I 315 I 1658
  102. a score=39158.0
  103. s ponAbe2.chr22 13770129 48 + 46535552 aaaaaaaCagccgggcacggtggctcactcctgtaaccccagcacttt
  104. s hg18.chr22 16069025 48 + 49691432 aaaaaaaCagctgggcacagtggctcactcctgtaaccccagcacttt
  105. i hg18.chr22 C 0 I 351
  106. s panTro2.chr22 16077844 48 + 50165558 aaaaaaaCagctgggcacagtggctcactcctgtaaccccagcacttt
  107. i panTro2.chr22 C 0 I 345
  108. s rheMac2.chr10 61854937 48 + 94855758 AAGAAAACagccaggcatggtggctcgctcctgtaaccccagcacttt
  109. i rheMac2.chr10 C 0 I 351
  110. s calJac1.Contig6986 128314 48 - 144597 TAAAAATCggctgggcacagtggctcacccctgtaatcccagcacttt
  111. i calJac1.Contig6986 I 1658 I 944
  112. a score=210038.0
  113. s ponAbe2.chr22 13770841 304 + 46535552 gctcacacctgtaatctcagcactttgcgaggccgaggagtgaagattacatgagctcaggagttggagatcagcctgccccacattgtgacaccccgtctataccaaacgtacaaaaa----------------ttatccacgcgtggtggtgcatgcctgtaatcccagctactcaggagcctgaggcaggagaatcacttgaacccgggaggcagaggttgcagtgagccaagatagcaccagtgcactccagcctgggcaacagagtgagactctgtctcaaaaaaaaatttttttaat-aaaagaaaaaaaTTAAC
  114. s hg18.chr22 16069424 303 + 49691432 gctcacacctgtaatcccagcactttgggaggccgaggagtgtggattgcctgagctcaggtgttcgagatcagcctggccaacatggtgaaaccccgtctctactaaaagtacaaaaa----------------ttatccaggtgtggtggttcatgcatgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgcagtgagccaagatcacaccagtgcacttcagcctgggcaacagagtgagactctgtctcaaaaaaaattttttttaat--aaaaaaaaaaaTTAAC
  115. i hg18.chr22 I 351 C 0
  116. s panTro2.chr22 16078237 301 + 50165558 gctcacacctgtaatcccagcactttgagaggccgaggagtgtggattgcctgagctcaggtgttcgagatcagcctggccaacatggtgaaaccccgtctctactgaaagtacaaaaa----------------ttatccaggtgtggtggttcatgcacgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgcagtgagccaagatcacaccagtgcactccagcctgggcgacagagcgagactctgtctcaaaaaaaaatttttttaat----aaaaaaaaaTTAAC
  117. i panTro2.chr22 I 345 C 0
  118. s rheMac2.chr10 61855336 303 + 94855758 gctcacacctgtaatcccagcactttgggaggccgaggtgggtggattgcctgagctcaggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaagtacaaaaa----------------tcacctaggtgtgatggtgcatgcctgtaatcccagctactcaggagactgaggcaggagaatcacttgaacccaagaggcagaggttgcagtgagccgagatagcaccagtgcactccagcctgggcgacagagtgagactctgtctcaaaaaaaattttttttaat--ttaaaaaaaaaaaaac
  119. i rheMac2.chr10 I 351 C 0
  120. s calJac1.Contig6986 129306 311 - 144597 gctcaagcctgtaatcccagcactttgggaggccgagatgggtggatcacacag--tcaagagatcaagaccatcctggccaacatggagaaaccccgtctttactaaaaatacaaaaaaaaaaaaaaaaaaaatttagccaggcatggtggcacgtgcctgtggtcccagctactcgggaggctgaggtggaagaatcacttgaacccaggaggtggacgttgcagtgagccgagactgtgccaccgcactccagcct-ggtgacagagcaagaatccatctcaaaaaaaaa-------aaccaaaaaacaaaaaTTAGC
  121. i calJac1.Contig6986 I 944 C 0
  122. a score=195144.0
  123. s ponAbe2.chr22 13771276 279 + 46535552 caggtacaccaccacccctggctaTTTATATGTGCAGGATGCTAATTATTTCATGTTTCATGGAGGTGTGTTTATACTACTCCAGGATGCTATATCACATTATATCCTATGTGGTAGCTTAACCCCTG--------------------------GGAAAACTATAAAGGGAA-AGCAAAGTCTCAGGGCTGGATGCTTTT----------------------------------CCAATCCTGACTGTCTGCGAGTCCCCCAGGAAGCAGGGGTTTTGGTTTCCAACACCCTTTTCCTAGTCTACCCATAAGGACAGAGGAGGAGAACAGCTGAGGGAGG
  124. s calJac1.Contig6986 129617 291 - 144597 CAGGCAT-----------------------------GGATGCTAATTATTTCATCATTCATGGAGGTGTGTTTATACCA-TCCAGGATGCTATATCATATTAT---------GGTAGCTTAGCCCCTGGGAAAGGCGTAGAAGAAAGATTGTAAGGAAAGCTATGAAGGGAATAGCACAGTCTCAAGGCTGGATGCTTTTCCAACTTTTCCAGGGAAGACCAGGAATATTCAGGCCCATCCTGATTGTC-GCAAGTCCCCTA---------GGTCTTGGTTTCTGACACCCTTCTCCTAGTCTACCCGTAAGGACAGCGGAGCAGAGCGGCTGAGTGAGG
  125. i calJac1.Contig6986 C 0 C 0
  126. s rheMac2.chr10 61855767 314 + 94855758 caggtgcaccaccgctcctggctatttatatGTGCAGGATGCTGATTATTTCATGTTTCATGGAGGTGTGTTTATACTACTCCAGGATGCTATATCGTATTGTATCCTATGCGGTAGCTTAGCCCCTG--------------------------GGAAAACTATGAAGGGAATAGCAAAGTCTCAGGGTTGGATGCTTTTCCAACTTTTCCAGGGAAGACCAGGAATATTCAGGCCAATCATGACTGTCTGCGAGTCCCCCAGGAAGCAGGGGTTCTGGTTTCCAACACCCTTTACCTAGTCTACCTAAAAGGACAGAGGAGCAGAGCAGCCGAGTGAGG
  127. i rheMac2.chr10 C 0 C 0
  128. s panTro2.chr22 16078669 280 + 50165558 caggtgcaccaccacccctggctatttatatGTGCAGGATGCTAATTATTTCATGTTTCATGGAGGTGTGTTTATACTACTCCAGGATGCTATATCACATTGTATCCTATGTGGTAGCTTAGCCCCTG--------------------------GGAAAACTAAAAAGGGAATAGCAAAGTCTCAGGGCTGGATGCTTTT----------------------------------CCAATCCTGACTGTCTGCGAGTCCCCCAAGAAGCAGGGGTTTTGGTTTTCAACACCCTTTTCCTAGTCTACCCATAAGGACAGAGGAGCAGAACAGCTGAGTGAGG
  129. i panTro2.chr22 C 0 C 0
  130. s hg18.chr22 16069858 280 + 49691432 caggtgcaccaccacccctggctatttatatGTGCGGGATGCTAATTATTTCATGTTTCATGGAGGTGTGTTTATACTACTCCAGGATGCTATATCACATTGTATCCTATGTGGTAGCTTAGCCCCTG--------------------------GGAAAACTAAAAAGGGAATAGCAAAGTCTCAGGGCTGGATGCTTTT----------------------------------CCAATCCTGACTGTCTGCGAGTCCCCCAGGAAGCAGGGGTTTTGGTTTTCAACACCCTTTTCCTAGTCTACCCATAAGGACAGAGGAGCAGAACAGCTGAGTGAGG
  131. i hg18.chr22 C 0 C 0
  132. a score=43910.0
  133. s ponAbe2.chr22 13771555 56 + 46535552 CTTTCTCTGCTCCATCTAGAATAGCAACAGCCACAAGCACAGTAATAGCCCCAAGA
  134. s hg18.chr22 16070138 56 + 49691432 CTTTCTCTGCTCCATCTAGAATAGCAACAGCCACAAGCACAGTAATAGCCCCAAGA
  135. i hg18.chr22 C 0 C 0
  136. s panTro2.chr22 16078949 56 + 50165558 CTTTCTCTGCTCCACCTAGAATAGCAACAGCCGCAAGCACAGTAATAGCCCCAAGA
  137. i panTro2.chr22 C 0 C 0
  138. s rheMac2.chr10 61856081 56 + 94855758 CTTTCTCTGCTCCACCTAGAATAGCAACAGCCGCAAGCACAGTAGTAGCCCCAAGA
  139. i rheMac2.chr10 C 0 C 0
  140. s calJac1.Contig6986 129908 55 - 144597 -TCTCTGTGCTCTGTCTAAAATAGAAACAGCTACAAGCACGACAGCAGCTCCGAGA
  141. i calJac1.Contig6986 C 0 I 7490
  142. a score=1046331.0
  143. s ponAbe2.chr22 13794262 1386 + 46535552 aagaacttgaaaatcactgcctctaagaagCTAACAGTGTTTGGTATTGGGGTCGACCCTTGGGAACCTGACTCTTTAAACCATGGACGTGAGTGCACAGCCCCAGTTAGGGGCCTTCTTCCTGTTTTTTGGCTGTTGAGATGCTGATAAGGTGACCTTGGAGCAGAATGGAGAAATGAACGGTGTTATACACAAACCACAGATGCTACACCCGAGCAGAACCCAACAGACCATCACTAACCCAGGAGGGGAGAACTCCTGACTTCATGACTGTAAGGGGCAAACTGAAAAGTAAGACTGAGGCCTGCAGCAACTCGTGACTCTTGAAGCTATTTGCTCCCTGTCCAGCTTCCCCATTAGATTGCAACACTCATTAAATATTTGCTAAAAAGTTgctcacagttagtgagcacttactatgtgctggacactggactagagtgcgtggtctacgccatctcatgcggtcctcaggacaactctgtgagggagatgatctgcccatt--------------ttatagatgcagaagtccaggACCCACTAAGTAAAATATTGGAACTGGGGAGGCAGTCTTGGGGCCATGCTGCTCATGGCTCTGTTCCACTGTCTTCCTTGTTGCTTCTCCCTGCTGAACTCCCAGAAACTGCCCAATAAATATTTGTTTTGATTGTCCTTTTTT-TGGGAATGCAAATGCTCAAACATATACTCAGTGAGAGAGGAGCTGGTTAGTT--TATCTCTGTCCTCATATTGTGACAGTGAATAGGCCAACACTGAGatctcaaactcaacttggcccatattgacttttccattttccctccccacaaaagctattcttcttccaactttccccttcccagtgagtggcacctccatccacccagttgtttctgccagaaacctgatttccactctagaaaatgaggaggagttagcggatatcttccacatctcccaccccaaacctccaccagg-------------cccccatgtttacccttcaacctgcccactccttccatctccgcgattgcaacccaatgcaaggtcccatcatcccgcagctgctcacttcagcagcttctacttttgtcccctttccattaattttccactctgcagatctaaaaacacaaatttcagcatgcccctcatgttccttcctgctgaaaacctttcaaagtctacccactacacagtgagtaaaatgcaagctcttttccttggcctgctgggccAGCCTCATCATGGGCCTGGGgaccatgtctccaccctctcccccagctcccgacctgctggccagccttcctgtagcctctcaagtgaggaggcccttcacttccaaggcactgctgtgctatccgctttacaggcgagctccttccc----------------------------ctccttgacc--------------agtgcag
  144. s hg18.chr22 16089475 1362 + 49691432 aagaacttgaaaatcactgcctctaagaagCTAACAATGTTTGGTATTGGGGTCGACCCTTGGGAACCTGACTCTTTAAACCATGGACGTGAGTGCACAGCCCCAGTTAGGGGCCTTCTTCCTGCTTTTTGGCTGATAA--------------------GGAGCAGAATGGAGAAATGAACGGTGTTATACACAAACCACAGATGCTACACCCGAGCAGAACCCAACAGACCATCACTAACCCAGGAGGGGAGAACTCCTGACTTCATGACTCTAAGGGGCAAACTGAAAAGTAAGACTGAGGCTTGCAGCAACTTGTGACTCTTGAAGCTATTTGCTCCCTGTCCAGCTTCCCCATTCGATTGCAACACTCGTTAAATATTTGCTCAAAAGTTgctcacagttagtgggcacttactatgtgctgggcactggactaaaggtcgtggtctacgccatctcatgcggtcctcaggacaattctgtgaggtaggtgatctgcccatt--------------ttacagatgcagaaGTCCAGGACCCACTAAGTAAAATATTGGAACTGGGGAGGCAGTCTTGGGGCCATGCTGCCCATGGCTCTGTTCCA--GTCTTCCTTGTTGCTTCTCCCTGCTGAATTCCCAGAAACTGCCCAATAAATATTTGTTTTGATTGTCCTTTTTT-TGGGAATGCAAATGCTCAAACATATACTCAGTGAGAGAGGAGCTGGTGAGTT--TGTCTCTGTCCTCATATTGTGACAGTGAATAGGCCAACACTGAGatctcaaactcaacttggcccatattgacttttccattttccctccccacaaaagctgttcttcttccaactttccccttcccagtgagtggcacctccatccacccagttgtttctgccagaaacctgatttccactctagaaaatgaggaggagttagcggatatcttccacatctcccaccccaaatctccaccagg-------------cccccatgtttacccttcaacctgcccactccttccatctccacagttgcaacccaatgcaaggccccatcatccctcagctgctcacttcagcagcttctacttttgtcccctttccattaattttccactctgcagatctaaaaacacaaatttcagcatgcccctcatgttccttcctgctgaaaacctttcaaagtctacccactacacagtgagcaaaatgcaagctctttttcttggcctgctgggccagccttatc--tggcctggagaccatgtctccaccctctcccccagctcccgacctgctggccagccttcctgtggcctctcaagtgagggggcccttcacttccaaggcgctgctgtgcaatcccctttacgggggagctccttccc----------------------------ctccttgact--------------agtgcag
  145. i hg18.chr22 C 0 C 0
  146. s panTro2.chr22 16100440 1396 + 50165558 aagaacttgaaaatcactgcctctaagaagCTAACAATGTTTGGTATTGGGGTCGACCCTTGGGAACCTGACTCTTTAAACCATGGACGTGAGTGCACAGCCCCAGTTAGGGGCCTTCTTCCTGCTTTTTGGCTGTTGAGATGCTGATAAGGTGACCTTGGAGCAGAATGGAGAAATGAACGGTGTTATACACAAACCACAGATGGTACACCCGAGCAGAACCCAACAGACCATCACTAACCCAGGAGGGGAGAACTCCTGACTTCATGACTCTAAGGGGCAAACTGAAAAGTAAGACTGAGGCCTGCAGCAACTCGTGACTCTTGAAGCTATTTGCTCCCTGTCCAGCTTCCCCATTCGATTGCAACACTCATTAAATATTTGCTCAAAAGTTgctcacagttagtgagcacttactatgtgctggacactggactaaaggtcgtggtctacgccatctcatgcggtcctcaggacaactctgtgaggtaggtgatctgcccattttatagatgcagaattatagatgcagaAGTCCAGGACCCACTAAGTAAAATATTGGAACTGGGGAGGCAGTCTTGGGGCCATGCTGCCCATGGTTCTGTTCCA--GTCTTCCTTGTGGCTTCTCCCTGCTGAACTCCCAGAAACTGCCCAATAAATATTTGTTTTGATTGTCCGTTTTT-TGGGAATGCAAATGCTCAAACATACACTCAGTGAGAGAGGAGCTGGTGAGTT--TGTCTCTGTCCTCATATTGTGACAGGGAATAGGCCAACACTGAGatctcaaactcaacttggcccatattgacttttccattttccctccccacaaaagctgttcttcttccaactttccccttcccagtgagtggcacctccatccacccagttgtttctgccagaaacctgatttccactctagcaaatgaggaggagttagcgggtatcttccacatctcccaccccaaatctccaccagg-------------cccccatgtttacccttcaacctgcccactccttccatctccacagttgcaacccaatgcaaggccccattatccctcagctgctcacttcagcagcttctacttttgtcccgtctccattaattttccactctgcagatctaaaaacacaaatttcagcatgcccctcatgttccttcctgctgaaaacctttcaaagtctacccaccacacagtgagtaaaatgcaagctctttttcttggcctgctgggccagccttatc--tggcctggagaccatgtctccaccctctcccccagctcccgacctgctggccagccttcctgtggcctctcaagtgagggggcccttcacttccaaggcactgccgtgcaatcccctttacgggggagctccttccc----------------------------ctccttgacc--------------agtgcag
  147. i panTro2.chr22 C 0 C 0
  148. s rheMac2.chr10 61887207 1386 + 94855758 aaagaCTTGAAAATCACTGCCTCTAAAAGGCTAAGAATGTTTGGCGTTGGGGTCGACCCTTGGGAACCTGACTCTTTAAACCATGGACGTGAGGGCACAGCCTCAGTTACGGGCCTTCCTCCTGTGTTTTGGCTGTTGAGCTGCTGCTAAGGTGACGTTGGAGCAGAATGGAGAAATGAACGATGCCATACACAAACCACAGATGCTACACCGGAGCAGAGTCCAACAGACCATCACTAACCCAGGAGGGGAGAACTCCTGACTTCACGACTCTAAGGGGCAAACTGAAAAGTAAGACTGAGACCCGCAGCAACTCATAACCCTTGAAGCTATTTGCTCCCTGTCCGGCTT-CCCATTAGATTGCAGCGCTCATTAAATATTTGCTCAAAAGTTGCACAcagttagtgagcacttaccacgtgctggacactggactaaagtgcgtggtctacaccatctcatgcggtcctcaggacaactctgtgagggaggtgatctgcccatt--------------ttacagatgcggaaGTCCAGTACCCACTAAGTAAAATATTGGAAGCGGGGAGGCAGTCTTGGGGCCATGCTGTCCATGGCTCTGTTCCACTGTCTTCCTTGTTGCTTCTCCCTGCTGAACTCCCAGAAACTGCCCAATAAATATTTGTTTTGATTGTCCTTTTTA-TTTAGATGCAAATGCTCAAACATATACTCAGTGAGAGAGGAGCTGGTGAGTTTATGTCTCTCTCCTCATATGGTGACAGTGAATAGGCCAACACTGAGatctcaaactcaacttggcccatattgagttttccactttccctccccacaaaagctgttctgcttccaactttccccttcccagtgagtggcacctccatccacctagttgcttctgccagaaacctgatttccactctagaaaat---gaggagttagctgatatcttccacatctcccaccccaaacctccaccaggccctgcctgtcgtcccccatgtttacccttcaacctgcccactccttccatctccacaactg-aaaccaatgcaaggccccatcatccctcagctgcccatttcagcagcttctacttttgtcccctttccattaattttccactctgtagatctaaaaacacaaatttcagcatgcccttcatgttccttcctgctaaaaacctttcaaagtctacccactacacagtgagtaaaatgcaagttctttttcttggcctgctgggccagcctcatc--tggcctggggaccatgtctccaccctctccccca-ttcccgacccgctggccggccttcctgtgccctcaaaagtgagggggtccttcgcttccaaggcattgccatgcaatcccctttacggggcagctccttccc----------------------------cTCCTTGACC---------------------
  149. i rheMac2.chr10 I 30626 C 0
  150. s calJac1.Contig5889 56093 1410 + 156393 aagaaagagaaag---------CAAGCAAGCTAAGACTGGTTGGCATGGGGATCAACTCTTGGGAACCTGACTC--TAAACGATGAGTGTGAGTGCACAGCCCCAGCGAGGAGCCTTCTTTCTGTTTTTTGGCTGTTGAGCTGCTGATAAGGTAAACTTGGAGCAGAATAAAGAAATGAACACTGTCACACACAAACCACAGATGCTACACCTGAGCGGAGCCCAGCAGATCATCACTAACCCAGGAGGGGAGAACACTTGACTTCATGACTCTAAGGGGCAGACTGTAAAGTAAGATTGACTACTTCAGCAACTCGTGACTCTTGAAGCCATTTTCTCCCTGTCCATCTTCCCCATTAGAGTGCAACACTCATTAAACATTTGCTCACAAGTTgctttcaatgagtgagcacttactatgcact-gacactggactaaagtgcatggtccacaccgtctcatgtggtcctcaggacaaccctataagggaggtaatctgcccatt--------------ttacagatgtggaaGTCCATTCTCCACTAAG-----TATTGCAACCAGACAGGCAGTCTCAGGGCTGTGCTGCCCATG--TCTGTTTCACTGTCTTCCTTGTCTCTTCCCCCTGCTGAATTCCCAGAAGCTGCCAAAAAAATATTTTTTTTGATTGTCCTTTTTTGTCGGAATGCAAATGTTCAAACATACGTTGGGTGAGAGAGGAGCTGGTGAGTTTATGTCTCTCTCCTCATGTCATGACAGTGAACATGCAAACATTGAGATTTCAAACTCAACTTGG-CCACATTGACTTTTCTACCTTCCCTCCCCACAAAATCTGGTGTTATTCCAAC--TCCACTTCTCAGTGAGTGGCACCTCCATCCACCCAGTGGTTTCTGCCATAAACCTGATTTCCATTCTAGAAAATGAGGAGGAGTTAGCTGATACTTTCTGCATCTCCCACACAA------CAGCGGGCCCTGACTGTGGTGTCCCATGTTTACCCTTCAGCCTGCCCACTCCTTCCATCTCCACAATGGCAACCCAGCACAAGACTCCATCGTCCCCCAGCCACTCACTTCAGTAGTTTCTACTTTTGACCCCTTTTGATTAATCTTTTACTCTGCA-ATCTAAAAGCACAAATCTCAGCATGCCCCTCATGCTCCTTTCTGCTGAAAACCTTTCAAAGTCTACCCACAACACAGCAAGTAAAATGCAAGCTCTTTTTCTGGGCCTGCTAGGCCAGCCTTATC--TGGCCTGGGAACCATGTCTCCATCACCTCCTCCAGCTCCTGACCGGCTGGCCAGCCTTTCTGTGGCC-CTCAAGTGAGGGG--CCTTCActtccaaggctttgacatgcaatcccctttgccagaagcttctttcccctttccttttttttgagacagagtctcactccatcaccaggcaccagactggagtgcag
  151. i calJac1.Contig5889 C 0 I 198
  152. a score=81430.0
  153. s ponAbe2.chr22 13795648 146 + 46535552 ctcccacccatccttcagatcccaacggaaatg--tgtcttcctggggagggcttcagggaacacccctataggaagttagc------------cccagttccagtcttcacaatacccttttatcttcttcctcaacatgtatcacagcttgtgatttt
  154. s hg18.chr22 16090837 146 + 49691432 ctcccacccatccttgagatcccgatggaaatg--tgtcttcctggggagggcttcAGGGAACACCCCTATAGGAAGTTAGC------------CCCGGTTCCACTCTTCACAATACCCTTTTATCTTCTTCCACAACATGTATCACAGCTTGTGATTTT
  155. i hg18.chr22 C 0 C 0
  156. s panTro2.chr22 16101836 146 + 50165558 ctcccacccatccttcagatcccgatggaaatg--tgtcttcctggggagggcttcAGGGAACACCCCTATAGGAAGTTAGC------------CCTGCTTCCACTCTTCACAATACCCTTTTATCTTCTTCCACAACATGTATCACAGCTTGTGATTTT
  157. i panTro2.chr22 C 0 C 0
  158. s rheMac2.chr10 61888593 115 + 94855758 ------------------------------ATG--TGTCTTCCTGGGGAGGGCTTCAGGGAACACCCCTATAGGAAGTTAGC------------CCCGGTTCCACTCTTCACAATACCCTTTTATCTTCTCCCACCACATGTATC-CAGTTTGTGATTTT
  159. i rheMac2.chr10 C 0 C 0
  160. s calJac1.Contig5889 57770 159 + 156393 ttcctgcccatccttgagatccagatgaaaagggtttttttctcagggaaggcttcAGGGAATGCCCCGTTTGAAAGGCAGCCCTGGCTGCACTCCCAGTTCCACTCCT-ATGATACCGTTTTCTCTTCTTCCACAACTTGCATCACAGTTTGTGATTTT
  161. i calJac1.Contig5889 I 198 I 689
  162. a score=389155.0
  163. s ponAbe2.chr22 13795794 506 + 46535552 gtattcatggatttctatgactgttcgtttcatatatatttgcatagtggatggaaagctgttgtttaccttggggtcttcatagtgccaggctcagaggaaggacccaaacgtctgctgTGGGAAGGCACACATGATTGAAAGTATGGAGGAAAAGAGTGGATGTCTGGGTGTATGAGCGTTTGTTAGACATTCAGGTCTCCTCAACCTGGTGTAACAGAGAAGAGGCAAATG-ACACCAGGGTGCCTTGCAAGGAGTGGCCAGTCAGCCCAGCCATTCACTGTGTGGCTTCTT-GTGtgccactggccaaaacttgtcataaatagatgagcctacaatgccaggagtgtacacagtgcctcctggaatcgggcagcactccacttgtgcaaTCACACCACAATCTTGGAGATCACGATAAATGCCAACAGCAAATGGATAAGCCTGGGCGAGGTCTTCTTGTTTGTTTGCATTTAGCTCTTCATTTTCttttttttctttctt-------tt
  164. s hg18.chr22 16090983 510 + 49691432 GTATTCATAGATTTCTATGACTGTTCGTTTCATATATATTCGCATAGCAGATGGAAAGCTGTTGTTTACCTTGGGGTCTTCATAGTGCCAGGCTCAGAGGAAGGACCCAAACGTCTGCTGCGGGAAGGCACGCATGATTGAAAGTATGGAGGAAAAGAGCGGGTGTTTGGGTGTATGAGTGTTTGTTAGACATTTAGGTCTCCTCAACCTGGTGTAACACAGAAGAGGCAAATG-ACACCAGGGTGCCTTGCAAGGAGTGGCCAATCAGCCCAGCCATTCGCTGTGTGGCTTCTT-GTGtgccattggccaaaacttgtcataaatagatgagcctacaatgccagcagtgtacacagtgcctcctggaatcgggcagcactctacttgtgcaatcatacCACAATCTTAGAGATCATGATAAATGCCAACAGCAAATGGATAAGCCTGGGCAAGTTCTTCTTGTTTGTTTGCATTTAGCTCTTCAttttcttttttttcttttcttttc---tt
  165. i hg18.chr22 C 0 C 0
  166. s panTro2.chr22 16101982 513 + 50165558 GTATTCATAGATTTCTATGGCTGTTCGTTTCACATATATTCGCATAGCAGATGGAAAGCTGTTGTTTACCCTGGGGTCTTCATAATGCCAGGCTCAGAGGAAGGACCCAAACGTCTGCTGCGGGAAGGCACACATGATTGAAAGTATGGAGGAAAAGAGTGGGTGTTTGGGTGTATGAGTGTTTGTTAGACATTTAGTTCTCCTCAACCTGGTGTAACAGGGAAGAGGCAATTG-ACACCAGGGTGCCTTGCAAGGAGTGGCCAATCAGCCCAGCCATTCACTGTGTGGCTTCTT-GTGtgccattggccaaaacttgtcataaatagatgagcctacaatgccagcagtgtacacagtgcctcctggaatcgggcagcactctacttgtgcaatcatacCACAATCTTAGAGATCATGATAAATGCCAACAGCAAATGGATAAGCCTGGGCAAGGTCTTCTTGTTTGTTTGCATTTAGCTCTTCATTTTCTTTTTTttcttttcttttcttttt
  167. i panTro2.chr22 C 0 C 0
  168. s rheMac2.chr10 61888708 511 + 94855758 GTATTCATAGATTTCTATGACTGTTCGTCTCATATCTATTCCCATAGCAGATGGAAAGCTGTTGTTTACCTTAGGGTCTTCATAGTGCCAGGTTCAGAGGAAGGACCCAAATGTCTGCTGTGGGAAGGCACGCATGATTGAAAGTATGGAGGAAAAGAGTGGGTGTTTGGGTGTGTGGGTGTTTGTTAGACATTTAGGTCTCCTCAACCTGGTATAAGAGAGAAGAGGCAAATATACAC---GGTGCCTTGCAAGGAGTGGCCAGTCGGCCCAGCCATTCACTGTGTGGCTTCTT-GTGtgccattggccaaaacttgtcataaatagatgagcctacaatgccagcagtgtacacggtgcctcctggaatcgggcagcattccacttgtgcaaTCACACCACAATCTTGGAGAGCATGATAAATGCCAACAGCACATGGATAAGCCTGGGCGAGGTTTTCTTGTTTGTTTGCATTCAACTCTTCACTTTCTTTTTTTTCCttttttctttcttt
  169. i rheMac2.chr10 C 0 I 300
  170. s calJac1.Contig6986 137453 503 - 144597 GTGTTCATAGATGTCTATGACCTTTCATTCCGTATACATTCCCATAGCAGATGGAGAGCTGCTGTTTACCGCGGGGTCTTCATAGTGCCAGACTCAGACCAAGGACCCAAACGTCTGCCGTGGGAAGGCGCGCCTGATTGAAAGTGTGGAGAAAAACAGTAGGTATTTGGGTGTGTGGG----TGTTGGACATTTGGGTCTCCTCAACCTGGTGTCACAAGGAAGAGGCAGATG-ACGCCA-GGTGTCTTGAAAGGAATGGCCAGTTAGCTCAGCCGTTCACTGTATGGCTTCTTCGTGtgccattggctgacaattgtcataaacagataagtctaaaatgctggcagtgtgcacagtgcctcccggacctgggcagccctccacctgtgcaatcacactgcggctctgGAGATCATGACAAATGCCAACAGCACATGGATGAGCCTGGGAGAGGCTTTCTTGTTTGTTTGCATTTAGCTCTTCATTTTAtttatttatttttaattt------
  171. i calJac1.Contig6986 I 7490 C 0
  172. a score=210330.0
  173. s ponAbe2.chr22 13796300 325 + 46535552 ttttttttttttgagacaaagtttcactcttgttgctcaggctggagtgtaatggcacgatctcagctcactgcaacctccgcctcctgggttcaaagtgattctcctgcctcagcctcccgcgtaggtgggattacaggcatgtgccaccacgcccggctaatt--ttgc-atttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcctgacctcaggtgatctgcccgccttggcctcccaaagtgctgggattaca-ggcatgagccactgcacctggc----tTTTTAAAtttttttattttttatttttatt
  174. s hg18.chr22 16091493 325 + 49691432 ttttttttttttgagacaaagtttcactcttgttgcccaggctggagtgtaatggcacgatctcagctcactgcaacctccgtctcctgggttcaaagcaattctcctgcctcggcctcccgcgtagctggtattatagccatgcgccaccacgcctggctaatt--ttgc-attttcagtagagatggggtttctccatgttggtcaggctggtctcgaactcccgacctcaggtgatctgcccgcctcggcctcccaaagtgctgggattata-ggcatgagtcaccgcacccggc----tTTTTAAAtttttttattttttacttttatt
  175. i hg18.chr22 C 0 C 0
  176. s panTro2.chr22 16102495 325 + 50165558 ttttttttttttgagacgaagtttcactcttgttgcccaggctggagtgtaatggcacgatctcagctcactgcaacctccgtctcctgggttcaaagcaattctcctgcctcggcctcccgcgtagctgggattacagccatgcgccaccacgcccggctaatt--ttgc-attttcagtagagatggggtttctccatgttggtcaggctggtctcgaactcccgacctcaggtgatctgcccgcctcggcctcccaaagtgctgggattata-ggcatgagtcaccgcaccgggc----tTTTTAAAtttttttattttttatttttatt
  177. i panTro2.chr22 C 0 C 0
  178. s rheMac2.chr10 61889519 304 + 94855758 tttttttttttttagatggagtcttgctc-cattgctcaggctggagtgcaatggcacaatctcgg--------------------ctgagtc--aagcaattct-ctgactcagcctcccaagtagctggaattacaggtgcctgccaccacatcgggctaatt--tttctatttttagtagagatggtgtttcaccatcttggccaggctggtcttgaactcctgacctt--gtgatccacccaccttgacctcccaaagtgctgggattaca-ggcatgagccaccgcgcccagccTAGCTCTTCAttttcttttttttttttttttttt
  179. i rheMac2.chr10 I 300 C 0
  180. s calJac1.Contig6986 137956 318 - 144597 ttttttttttttgagacagagtttcgtgcttgttacccaggctggagtgcaatggcgtgatctcggctcacggcaacctccgcctcctgggttc-aggcaattctcctgcctcagcctcccgagtagctgggactacaggcacgcgccaccgtgcccagctaatttattgt-atttttagtagagacggggtgtcaccatgttgaccaggacggtctcgatctcttgacctc--atgatccacccgcctcagcctcccaaagtgctgggattacagggcgtgagccactgcgcccggc--------cAATTTTCTTTATTCATTCCTATT---
  181. i calJac1.Contig6986 C 0 M 888
  182. a score=320686.0
  183. s ponAbe2.chr22 13796625 431 + 46535552 ttttagatggagtctcactctgtcacccaggctggagtgcaatggcgcaatctcggctcactgcaacctctgccttccaggttcaagcaattct-ctgactcagcctcccgagtagctgggattataggcacccaccaccacaccgggcgaatttttc-tattttttagtagagat-ggggtttcatcatcttggccaggctggtcttgaactcctgaccttgtgatccactcaccttggcctcccaaagtgctgggattacaggcattagccactgcgcccggccTAGCTCGTCATTTTCAGTGCAACACTGAAACACCCCTAGGGATCAAGCCCAAGCCACTTGCCT-CCATTTTTCTGTTTCTCGTCTCCCACACACtctttttttgttttttttgagacgggagtctcgctctgtcacccaggctggagtg
  184. s hg18.chr22 16091818 432 + 49691432 ttttagatggagtctcactctgtcgcccaggctggagtgcaatggcgcaatctcggctcactgcaacctctgccttccgggttcaagcaattct-ctgactcagcctcccaagtagctgggattataggcacccaccaccacaccgggctaatttttc-tattttttagtagagat-ggggtttcatcatcttggccaggctggtcttgaactcctgaccttgtgatccacccaccttggcctcccaaagtgctgggattacaggcatgagccaccgcgcccggccTAGCTCCTCATTTTCAGTGCAACACTGAAACATCCCGAGGGATCAAGCCCAAGCCACTTGCCTCCCATCTTTCTGTTTCTCATCTCCCACACACTCtttttttgttttttttgagacgggaatctcgctctgtcacccaggctggagtg
  185. i hg18.chr22 C 0 C 0
  186. s panTro2.chr22 16102820 433 + 50165558 ttttagatggagtctcgctctgtcacccaggctggagtgcaatggcgcaatctcggctcactgcaacctctgccttccgggttcaagcaattct-ctgactcagcctcccaagtagctgggattataggcacccaccaccacaccgggctaatttttc-tattttttagtagagatgggggtttcatcatcttggccaggctggtcttgaactcctgaccttgtgatccacccaccttggcctcccaaagtgctgggattacaggcatgagccaccgcgcccggccTAGCTCCTCATTTTCAGTGCAACACTGAAACATCCCGAGGGATCAAGCCCAAGCCACTTGCCTCCCATCTTTCTGTTTCTCATCTCCCACACACTCttttttcgttttttttgagacgggaatctcactctgtcacccaggctggagtg
  187. i panTro2.chr22 C 0 C 0
  188. s rheMac2.chr10 61889823 432 + 94855758 tttgagacggagtctcgctctg-cgcccaggctggagtgcagtggccggatctcagctcactgcaaactctgcctcccaggttcacgccattctcctgcctcagcctcccgagtagttgggactacaggcacccgccactgcgcccggctagttttttgtattttttagtagagac-ggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgtctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggccTAGCTCTTCATTTTCAGTGCAACACTGAAACATCCCTGGGGATCAAGCGTGAGCCACTTGCCTCCCATCTTTCTGTTTCTCATCTCCCACACACtctttttttg-gtttcgtgagacaggagtctcactctgtcacccaggctggagtg
  189. i rheMac2.chr10 C 0 C 0
  190. s calJac1.Contig5889 58618 430 + 156393 ttttagatggaatcttgctctgtca-caaggctggagtgcagtggcacaagctcggctcagggcaacctccacctcctcggttcaagtgattcttctgcctcagcctccctactagctgggaccacaggcacacgccaccactcccggctaattttttgtatttttc-gtagagat-gaggtttcaccttgttggccaggatagtctcggtctcttgacttcgtgatccacctgccttgacctcccaaagtgctgggattacaggtgtgagccaccgtgcccggccTAGCTCTTCATTTTCAGTGCATCACTGAAATATCCCTAGAGATCAAGACCAAACCACTTACCTCTTATCTTTCTGTGTCCCATCTCCCACACACTCTCCTTTCAGttttcttgagatgggagtcttg--ctgtcactcaagctgaagtg
  191. i calJac1.Contig5889 I 689 I 18
  192. a score=194462.0
  193. s ponAbe2.chr22 13797091 246 + 46535552 tcccgggctcaagtggttctcatgcctcagcctcctgagtagctgagattacaggcacccgccactaatttaaaaattaaatataaaaattagtctgctggctaatttttgtatttttagtagagaggagatttcaccatgttgaccaggctggtctcgaacgtctgatctcaacagatccacccgcctcggcctctgaaagtgctgggattacaggcgtgagccaccacgcccagACTCCCATAC
  194. s calJac1.Contig5889 59066 246 + 156393 tcccaggttcaggtgattctgatgcctcatccttctaagtacctgggaccacaggcaggcatcattaacttaaaaattaaatacaaaaattagcccgctggataatttttgtatttttagtagagacagtgtttcgtcatgttggccagtttggcctcgaactcttgatctcaactgatctgcccacctcagcctcccaaagtgctggaattacaggtgtgacccactgtgcccggcTGCCCCAAC
  195. i calJac1.Contig5889 I 18 C 0
  196. s rheMac2.chr10 61890290 246 + 94855758 tcccaggttcaagtgattctcatgcctcagcctcctgagtagctgagattacaggcacccgccactaatttaaaaattaaatataaaaattagcctgttggctaatttttgtatttttagtagagagaaggtttcaccatgttggccaggctggtctcaaacttctgatctcaactgatccgcccacctcggcctctaaaagtgctgggattacaggcgtgagccaccacacccagACTCCCATAC
  197. i rheMac2.chr10 C 0 C 0
  198. s panTro2.chr22 16103288 246 + 50165558 tcccaggttcaaatggttctcatgcctcagcctcctgagtagctgagattacaggcacccgccactaatttaaaaattaaatataaaaattaccctgctggctaatttttgtgtttttagtagagaggaggtttcaccatgttgaccaggctggtctcgaacgtctgatctcaactgatctgcccgcctcagcctctgaaagtgctgggattacaggcgtgagccaccacgcccagACTCCCATAC
  199. i panTro2.chr22 C 0 C 0
  200. s hg18.chr22 16092285 246 + 49691432 tcccgggttcaagtggttctcatgcctcagcctcctgagtagctgagattacaggcacccgccactaatttaaaaattaaatataaaaattagcctgctggctaatttttgtatttttagtagagaggaggtttcaccatgttgaccaggctggtctcgaacgtctgatctcaactgatccgcccgcctcagcctctgaaagtgctgggattacaggcgtgagccaccacgcccagACTCCCATAC
  201. i hg18.chr22 C 0 C 0
  202. a score=32595.0
  203. s ponAbe2.chr22 13797337 40 + 46535552 TTTGCAAGCACCGACATTTATCTTTACAACTCTCCATAGT
  204. s hg18.chr22 16092531 37 + 49691432 TTTGTAAGCACCGACATTTATCTTTACAACTCTCC---GT
  205. i hg18.chr22 C 0 C 0
  206. s panTro2.chr22 16103534 37 + 50165558 TTTGTAAGCACTGACATTTATCTTTACAACTCTCT---GT
  207. i panTro2.chr22 C 0 C 0
  208. s rheMac2.chr10 61890536 37 + 94855758 TTTGCAAGCACTAACATTTATCTTTACAACTCTCT---GT
  209. i rheMac2.chr10 C 0 C 0
  210. s calJac1.Contig5889 59312 37 + 156393 CTTGCCAGCACCAACATTTATCTTTACAACTCTCT---AT
  211. i calJac1.Contig5889 C 0 I 1462
  212. a score=172185.0
  213. s ponAbe2.chr22 13797377 201 + 46535552 AGTTTTCTTTCTTCCATTCCTATTTTTCATTTTCTTTTTTGCGGGGAAAAGGGAGTGGCTTTTTCTTTATCACTGCTGTCATGCCTGGTGAGACTGTCTGTATTTTGGTCCTTTCCTTTGGCTGCCCCAGGAATCATCATCGATTATGCCAACATCTGTGACTTGCCACCTTCAAAGTGGGCTCTG--AATCCAAAGACAAAA
  214. s hg18.chr22 16092568 201 + 49691432 AGTTTTCTTTCTTCCATTCCTATTTTTCATTTTCTTTTCTGCGGGGAAAAGGGAGTGGCTTTTTCTTTATCACTGCTGTCATGCCTGGTGAGACTGTCTGTATTTTGGTCCTTTCCTTTGGCTGCCCCAGGAATCATCATCAATTATGCCAACATCTGTGACTTGCCACCTTCAAAGTGGGCTCTG--AATCCAAAGACAAAA
  215. i hg18.chr22 C 0 C 0
  216. s panTro2.chr22 16103571 201 + 50165558 AGTTTTATTTCTTCCATTCCTATTTTTCATTTTCTTTTCTGCGGGGAAAAGGGAGTGGCTTTTTCTTTATCACTGCTGTCATGCCTGGTGAGACTGTCTGTATTTTGGTCCTTTCCTTTGGCTGCCCCAGGAATCATCATCAATTATGCCAACATCTGTGACTTGCCACCTTCAAAGTGGGCTCTG--AATCCAAAGACAAAA
  217. i panTro2.chr22 C 0 C 0
  218. s rheMac2.chr10 61890573 201 + 94855758 AATTTTCTTTCTTCCATTCCTATTTTTTATTTTCTTTTTTGCGGTGAAAAGGGAGTGGCTTTTTCTTTATCACTGCTGTCATGCCTGGTGAGACTGTCTGTATTTTGGTCCTTCCTTCAGGCTGCCCCAGGAATCATCATCAATTATGCAAACATCTGTGACTTGCCACCTTCAAGGTGGGCTCTG--AATCCAAAGACAAAA
  219. i rheMac2.chr10 C 0 C 0
  220. s calJac1.Contig6986 139162 176 - 144597 AATTTTCTTTATTTCATTCCTATTTTTTGTTTTATTTTCTGGAGGGTAGGTGCAGTGGCTTTTCCTTTTTCACTGCTGTCATGCCTGGCGAGCCTGTCTGTAT----------------------CTCAGGAATCATCATCAATCGTGCCGACACCTGTGACTTGCCACCTTCAAAGTGGGTTCTGAAAATCCAAAGG-----
  221. i calJac1.Contig6986 M 888 C 0
  222. a score=143030.0
  223. s ponAbe2.chr22 13797578 172 + 46535552 GATGGCCCTCTGGgccagacgtggtggctcacacctgtaatcccagcactttgggaggctgaagcagaagaattgcttgagcccagaagtttgaggctgcagtgagccataatcacaccactgcattccagtccaggcgacagagcaagaccatatctctaaaaaataataa
  224. s hg18.chr22 16092769 172 + 49691432 GATGGCCCTCTGGgccagacgtggtggctcacacctgtaatcccagcactttgggaggctgaagcagaagaattgcttgagcgcagaagtttgaggctgcagtgagccataatcacaccactgcactccagtccaggcgacagagcaagaccatatctctaaaaaataataa
  225. i hg18.chr22 C 0 C 0
  226. s panTro2.chr22 16103772 172 + 50165558 GATGGCCCTCTGGgccagacgtggtggctcacacctgtaatcccagcactttgggaggctgaagcagaagaattgcttgagcccagaagtttgaggctgcagtgagccataatcacaccactgcactccagtccaggcgacagagcaagaccatatctctaaaaaataataa
  227. i panTro2.chr22 C 0 C 0
  228. s rheMac2.chr10 61890774 172 + 94855758 GATGGCCCTCTGGgccagacctggtggctcatacctgtaatcctagcactttgggaggctgaagtggaagaattgcttgagcccagaagtttgaggctgcagtgagccataatcacatcactgcactccagtccaggcaacagagcaagaccatatctctaaaaaataataa
  229. i rheMac2.chr10 C 0 C 0
  230. s calJac1.Contig6986 139338 161 - 144597 ---------CTGggccaggcgtggtggctcgggcctgtaatcccagcacttggagaagccgaagcagaagaactgcttgagcccagaagtttgagactgcagtgagccataatcacaccactgcactccaagccaggtgacagagcaaga--acatctctaaaaaatcataa
  231. i calJac1.Contig6986 C 0 I 755
  232. a score=339749.0
  233. s ponAbe2.chr22 13797750 465 + 46535552 taa--------taaaaaCTTTTTTAAAAAGTAGG-AAAAAAAAGGCCTCTCGTGCAATTGTGCATGTTTTGGCCAGCCTTTTCTATACATCAGATGTGGGGTCTGTGGCCTTGTTGGGGTGAAGGACTTTTATTTCCACCTGTTGAC-----------AGGACAGCAGGAGGACTGCCTGCCCTTCCTGGTCTTATGGTTGCTGTGTTGTTCTCAAGAGCCTTCCTCCAGCAGCAGGGAGGGGAGGACTGGCTGTCTCAGAATCTTTTAAAAGCCCTGCTGCCTGAGGACCTGCATCACCCAGGATTCCATTTCATTTCTCCAGCCACAATCCCTGCCAGTGTTTTCTGCACTCTGGATGAGAAACCTTAGGAAAGCAAATCAGATCATATCACTTCCCTTCTGAAAACT--CCAAAAGCTCCCC---CACCCGccgcactggc--ctctttattg----tccccctgcacagcctccagctcctcgtactgacct
  234. s hg18.chr22 16092941 472 + 49691432 taataaaaacttaaaaa------aaaAAAGTAGG-AAAAAAAAGGCCTCTCGTGTGATTGTGCATGTTTTGGCCAGCCTTTTCTATACGTCAGACGTGGGGTCCGTGGCCTTGTTGGGGTGAAGGACTTTTATTTCCACCTGTTGAC-----------AGGACAGCAGGAGGACTGCCTGCCCTTCCTGGTCTGACGGTTGCTGTGTTGTTCTCAAGAGCCTTCCTCCAGCAGCAGGGAGGGGAGGACTGGCTGTCTCAGAATCTTTTAAAAGCCCTGCTGTCTGAGGACCTGCATCACCCAGGATTCCGTTTCATTTCTCCAGCCACAATCCCTGCCAGTGTTCTCTGCACTCTGGATgagagaccttaggaaagcaaatcagatcgtatcacttcccttctgaaaatt--ccaaaagctccccccgcccccgccgcaccggcctctctttattg----gccccctgcacagcctccagctcctcgtactgacct
  235. i hg18.chr22 C 0 C 0
  236. s panTro2.chr22 16103944 477 + 50165558 taataataa--taaaaactttttaaaaaagtaggaaaaaaaaaGGCCTCTCGTGTGATTGTGCATGTTTTGGCCAGCCTTTTCTATACGTCAGAGGTGGGGTCCGTGGCCTTGTTGGGGTGAAGGACTTTTATTTCCACCTGTTGAC-----------AGGACAGCAGGAGGACTGCCTGCCCTTCCTGGTTTGACAGTTGCTGTGTTGTTCTCAAGAGCCTTCCTCCAGCAGCAGGGAGGGGAGGACTGGCTGTCTCAGAATCTTTTAAAAGCCCTGCTGTCTGAGGACCTGCATCACCCAGGATTCCGTTTCATTTCTCCAGCCACAATCCCTGCCAGTGTTTTCTGCACTCTGGATGAGAGACCTTAGGAAAGCAAATCAGATGGTATCACTTCCCTTCTGAAAATT--CCAAAAGCTCCCCCCGcccccgccgcactggcctctctttattg----cccccctgcacagcctccagctcctcgtactgacct
  237. i panTro2.chr22 C 0 C 0
  238. s rheMac2.chr10 61890946 463 + 94855758 taataaaaacttaaaaaaaa---AAAAAAGTAGG--AAAAAAATGCCTCTCACGTGATTGTGCATGTTTTGGCCAGCCTTTTCTACACGTCTGACATGGGGTCCGTGGCCTTGTTGGGGTGAAGGACTTTTATTTCTACCTGTTGAC-----------AGGACAGCAGGAGGACTGCCTGCCCTTCCTGGTCTGATGCTTGCTCTGTTGTTCTCAAGAGCCTTCCTCCAGCAGCAGGGAGCGGAGGGCTGGCTGTCTCGGAATCTTTTAAAAGCCCTGCTGCCTGAGGACCTGCATTACCCAGGATTCCATTTCATTTCTCCAGCCACAGTCCCTGCCAGTGTTTTCTGCGCTCTGGACGAG--ACTTTAGGAAAGCAAATCAGATCGTATCACTTCCCTTCTGAAAACA--CCAAAACATGCCCC--------CCGCACTGGCCTCGCTTTATTG-----ccccctgcacagcctccagctcctggtactgacct
  239. i rheMac2.chr10 C 0 C 0
  240. s calJac1.Contig6986 140254 474 - 144597 TAATAACAAC-TAAGAA------AAAAACGTAGG-AAAAGAAAGGCCCCTCATGTGATTGGGCATGCTTTGGCCAGCCTTCTCTATAGGTCAGATGTGGGGTCCGTGGCTTTGTGGGGGTGAAGGA-TTTCCTTTCCACCTGCTGACaggacagcaggaggacagcaggaggacTGCCCGCACTTCCTGGTGTGATGGTTG---TGTTGTTCTCGAGAGCCTTCCTCCAGCAGCAGGGAGGGGATG-CTGGC-GGCTCAGCATCTCTTACAAGCCCAGCTGCCTGAGGACCTGCATCACCCAGGGTTCCGTTTCATTTCTCCGGCCACAATCCCTGCCCGTGTTTTCTGCCCTCTGGACGGGAGACCTTAGGAAAGCaaatcagatcgtgtcactt-ccttctgaaaacttcccaaaagtttccc-------aACGGCACTGGCCTCTCTATATCGCACCCCCTCCAACAAAATCTCCAGCTCCTCACACTGACCT
  241. i calJac1.Contig6986 I 755 C 0
  242. a score=17621.0
  243. s ponAbe2.chr22 13798215 39 + 46535552 ctttg--cagttctccaagccggccaggct-catgctttgca----
  244. s hg18.chr22 16093413 39 + 49691432 ctttg--cagttctccaaaccggccaggct-cgtgctttgca----
  245. i hg18.chr22 C 0 C 0
  246. s panTro2.chr22 16104421 39 + 50165558 ctttg--cagttctccaaaccggccaggct-cgtgctttgca----
  247. i panTro2.chr22 C 0 C 0
  248. s rheMac2.chr10 61891409 39 + 94855758 ctttg--cagttctccaaaccagccaggct-ggggctttgcg----
  249. i rheMac2.chr10 C 0 C 0
  250. s calJac1.Contig5889 60811 45 + 156393 CTTTGGTCAGATGCACACACCC-CCAGGCTGTACACTTCCCTTCCC
  251. i calJac1.Contig5889 I 1462 I 88
  252. a score=43994.0
  253. s ponAbe2.chr22 13798254 68 + 46535552 caggcctttgcacaggtgcacacacccgctgggcctgggagagctttcccttcctgcttcAGGAAGGC
  254. s hg18.chr22 16093452 68 + 49691432 gaggcctttgcacaggtgcacacacccgctgggcctggaagacctttcccttcccgcttcacgaaggc
  255. i hg18.chr22 C 0 C 0
  256. s panTro2.chr22 16104460 68 + 50165558 gaggcctttgcacaggtgcacacatccgctgggcctggaagacctttcccttcccgcttcacgaaggc
  257. i panTro2.chr22 C 0 C 0
  258. s rheMac2.chr10 61891448 68 + 94855758 caggcctttgcacaggcgcacacacctgctgggcctggaagtgctttcccttcccgcttcaCGAAGGT
  259. i rheMac2.chr10 C 0 C 0
  260. s calJac1.Contig6986 140728 64 - 144597 CAGGCCTTTTGTCAGATGCACACACCC-CCGGGCCTGTA---GCTTGCCCCTCCCCCTTCCTGTGGGC
  261. i calJac1.Contig6986 C 0 I 1746
  262. a score=186748.0
  263. s ponAbe2.chr22 13798322 268 + 46535552 CAGGTGGCCTCCCTGGGCTGAGCCCCTGTCTCAGCATGTGGCGCACTGTGTTGAAATGCTCCAGGACCTGAGTGCCTCTATCACTGGGATACACCTCCCAATGGCAGAGGCGGTCTCGTCACCAAATGCTGTGGGTGCCGCTCTCTATGTAACTGCTGGGTCAAT-GTTTGCCCAGTGGTTGAATGAATGGATGCGAGAAGCTGCTTAGTTCCCGTCTCTCCCTGGGACTCCAGTCCTGCCACGGAG----GGAGCATTAGGAACAGGCACTC
  264. s hg18.chr22 16093520 268 + 49691432 caGGTGGCCTCCCTGGGCTGAGCCCCTGTCTCAGCATGTGGCGCACTGTGTTGAAATGCTCCAGGACTTGAGTGCGTCTATCACTGGGATACACCTCCCAATGGCAGAGGCAGTCTCGTCACCAAATACTGTGGGTGCCGCTCTCTATATAACTGCTCGGTCAAT-GTTTGCCCAGTGGTTGAATGAATGGATGCGAGAAGCTGCTTAGTTCCCTTCTCTCCCTGGGGCTCCAGTCCTGCCACGGAG----GGAGCATTAGGAACAAGCACTC
  265. i hg18.chr22 C 0 I 1160
  266. s panTro2.chr22 16104528 268 + 50165558 caGGTGGCCTCCCTGGGCTGAGCCCCTGTCTCAGCATGTGGCGCACTGTGTTGAAATGCTCCAGGACTTGAGTGCCTCTATCACTGGGATACACCTCCCAATGGCAGAGGCAGTCTCGTCACCAAATCCTGTGGGTGCCGCTCTCTATATAACTGCTCGGTCAAT-GTTTGCCCAGTGGTTGAATGAATGGATGCGAGAAGCTGCTTAGTTCCCTTCTCTCCCTGGGGCTCCAGTCCTGCCACGGAG----GGAGCATTAGGAACAAGCACTC
  267. i panTro2.chr22 C 0 I 1161
  268. s rheMac2.chr10 61891516 272 + 94855758 CACGTGGCCTCCCTGGGCTGAGCCCCTGTCTCAGCACGTGGCGCACTGTGTTGAAATGCTCCAGAACCCGAGTGCCTCTATCACTGGGATACACCTCCCAATGGCAGAGGCGGTCTCGCCACCAAACGCTGTGGGTGCCACTCTCTGTATAACTGCTCAGTCAAT-GTTTGCCCAGTGGTTGAATGAATGGATGGGAGAAGCTGCTTAGTTCCCTTCTCTCCCTGGGGCTCCAGTCCTGCCACTGAGCGAAGGAGCGTTAGGAACAGGCACTC
  269. i rheMac2.chr10 C 0 I 1718
  270. s calJac1.Contig5889 60944 228 + 156393 CAGGTGGCCTCCTTGGACAGAGCCCCCGTCTTGGCCTGCAGTACACTGTGTTGAAATGCTCCAGGCCTT-------------ACCAGG-----------AGTGGCAA---------------CAAATGCTGTAGTTGCCAATCTCTATGTAACTGTTATGTCACTGGTTTGCCCAGTGGTTGAATAAATGGATGTGAGACGTCACCTAGTTTTCTTCTCTCTCTAGGGCT-CAGCTTTGCCACCAAG----GGAGCATTAGGGACAGGTGCT-
  271. i calJac1.Contig5889 I 88 I 3530
  272. a score=113956.0
  273. s ponAbe2.chr22 13802034 147 + 46535552 AACCCAACTTCTCAGCTGCCTCTTTCGTGCTCTGTCCTTTCCCTTCTAACTCCCT-CCCACTCTGTGCACCACCTATTACTGTCCCTATTGTAAAAGATGTGGAAACGCGGGCTTCACAGGTT-------CAACAGACACTCAGTTCTGCAGCCA
  274. s hg18.chr22 16094013 155 + 49691432 AACCCAACTTCTCAGCTGCCTCTTTTGTGCTCTGTCCTTTCCCTTCTAACTCCCTCCCCACTCTGTGCACCACCTATTACTGTCCCTATTGTAGAAGATGTGGAAACGCGGGCCTCACGGGTTCAATAGCCAACAGACACTCAGTTCCGCAGCCA
  275. i hg18.chr22 N 0 C 0
  276. s panTro2.chr22 16105023 154 + 50165558 AACCCAACTTCTCAGCTGCCTCTTTAGTGCTCTGTCCTTTCCCTTCTAACTCCCT-CCCACTCTGTGCACCACCTATTACTGTCCCTATTGTAGAAGATGTGGAAACGCGGGCCTCACGGGTTCAATAGCCAACAGACACTCAGTTCCGCAGCCA
  277. i panTro2.chr22 N 0 C 0
  278. s rheMac2.chr10 61892010 154 + 94855758 AACCCAGCTTCTCAGCTGCCTCTTTGGGGCTCTGCCCTTTCCCTTCTAACTCCCT-CCCACGCTGTGCACCACCTGTTACTGTCCCTATTGTAGAAGATGTGGAAACGCGGGCCTCACGGGTTCAACAGCCAACAGACACTCATTTCCTCAGCCA
  279. i rheMac2.chr10 N 0 C 0
  280. s calJac1.Contig9263 16139 138 + 62211 AACCCAACTTCTTGGCTGCCTCTTTTGAGCTCTGCCCTTTTCCTGCTAACTCCTT-CCCATTCTGTCCATCACCTATGACTGTCCCTATTGTAGAAGATGTGGAAACACGGGCTTCATAGGTTCAATAGCCAGCAGACA----------------
  281. i calJac1.Contig9263 n 0 C 0
  282. a score=55069.0
  283. s ponAbe2.chr22 13802181 64 + 46535552 TCAAGAGGAAGACCAGGTAAAAACAACAGCCACAGCTGAGCTCcacagatgacctggtgtaagc
  284. s hg18.chr22 16094168 64 + 49691432 TCAAGAGGAAGACCAGGTAAAAACAACAGCCACAGCTGAGCTCCACAGatgacctggtgtaagc
  285. i hg18.chr22 C 0 C 0
  286. s panTro2.chr22 16105177 64 + 50165558 TCAAGAGGAAGACCAGGTGAAAACAACAGCCACAGCTGAGCTCCACAGatgacctggtgtaagc
  287. i panTro2.chr22 C 0 C 0
  288. s rheMac2.chr10 61892164 64 + 94855758 TCGAGAGGGAGACCAGGTAAAAACAACAGCCACAGCTGAGCTCCACAGACGACCTGGCGCAAGC
  289. i rheMac2.chr10 C 0 C 0
  290. s calJac1.Contig6986 141463 64 - 144597 CCAAGACGGAGACCAGGTAAAAACAGCAGCCACGGCTGAGTTCcacagatgacctggtgtaagc
  291. i calJac1.Contig6986 n 0 I 789
  292. a score=404636.0
  293. s ponAbe2.chr22 13802245 535 + 46535552 ctcagtcgccttatgaggtgggcaagcactttccccccattcgacagatgaaaaacctgacttcagaggagctactaccctggatccaggttccagcaagtggctgagccaggCCCACTACACTAAATCTGTCCTTCGCTTACAGCCTCCTAGGGGAGGAGAGAGAAAACAGAAGCAGGAAAAGGCCAATTGAGAGGGAGAAGGTTCTGGAGCAGGACTGCAAGGCGACCTCGGCTTCCTGGCCCCTGGTGGCTGTATTTGCAGGTGCATCACACACCCTTCTCAG------CCTCTGCTCCCTGCACTGAACATGCTGGAACTCCAACCACACCTCACCTGCCACCTTCCTACC---TACTTCTATTTGCTCTTCTCCCACTTTTGCCCAGGGGCCAGTTTCAGCTGCTTACTTTCCAAAGGATCACTTGAGCAGCACCTCCATCTACACAGACTGCAGAAGGCCCAACTGAATGCAGGCTGGATGcagcctgggctgtgctttagaatcacctgggaaacttttacaagccacgggtgtcta
  294. s hg18.chr22 16094232 538 + 49691432 ctcagtcgccttatgaggtgggcaagcactttccccccattcaacagatgaaaaacctgacttcagagaagctaataccctggatccaggttccagcaagtggctgagccaggCCCATGACACTAAACCTGTCCTTCGCTTACAGCCTCCTAGGGGAGGAGAGAGAAAACAGAAGCGGGAAAAGGCCAATTGAGAGGGAGAAAGTTCTGGAGCAGGACTGCAAGGCGACCTTGGCTTCCTGGCCCCTGATGGCTGTATTTGCAGGTGCATCACACACCCTTCTCAG------CCTCTGCTCCCTGCACTGAACATGCTGGAACTCCAACCACACCTCACCTGCCACCTTCCTACCAGACACTTCTATTTGCCCTTCTCCCACTTTTGCCCAGGGGCCAGTTTCAGCTGCTCACTTTCCAAAGGATCACTTGAGCAGCACCTCCATCTACACAGACTGCAGAAGGCCCAACTGAATGCAGGCTGGATGcagcctgggctgcaccttagaatcacctgggaaacttttacaagccacaggtgtcta
  295. i hg18.chr22 C 0 C 0
  296. s panTro2.chr22 16105241 538 + 50165558 ctcagtcgccttatgaggtgggcaagcactttccccccattcaacagatgaaaagcctgacttcagagaagctaataccctggatccaggttccagcaagtggctgagccaggCCCACGACACTAAACCTGTCCTTCGCTTACAGCCTCCTAGGGGAGGAGAGAGAAAACAGAAGCGGGAAAAGGCCAATTGAGAGGGAGAAAGTTCTGGAGCAGGACTGCAAGGCGACCTTGGCTTCCTGGCCCCTGGTGGCTGTATTTGCAGGTGCATCACACACCCTTCTCAG------CCTCTGCTCCCTGCACTGAACATGCTGGAACTCCAACCACACCTCACCTGCCACCTTCCTACCAGACACTTCTATTTGCCCTTCTCCCACTTTTGCCCAGGGGCCAGTTTCAGCTGCTCACTTTCCAAAGGATCACTTGAGCAGCACTTCCATCTACACAGACTGCAGAAGGCCCAACTGAATGCAGGCTGGATGcagcctgggctgcaccttagaatcacccgggaaacttttacaagccacaggtgtcta
  297. i panTro2.chr22 C 0 C 0
  298. s rheMac2.chr10 61892228 499 + 94855758 CTCAGTCGccttatgaggtgggcaagcactttccccccattcgactgatgaaaagcctgacttcggagaagctaatacccaggatccaggttccagcaagtggctgagccaggCCCACTACACTAAACCTGTCCTTCGCTTGCAGCCTCCTAGGGGAGGGGAGAGAAAACAGAAGCGGAATAAGGCCAACTGAGAGGGCAAAGGTTCTGGAGCAGGACCACAAGGCGACCTCGGCTTCCTGGCCCCCGGTGCCTGTACTTGCAGGTGCATCACACACCCTTCTCAG------CCTCTGCTCCCTGCACTGAATATGCTGGAACTCCAACCACACCTCACCTGCCACCTTCCTACCGGACACTTCTATTTGCCCTTCTCCCACTACTGCCCAGGGGCCAGTTTCAGCTGCTCACTTTCCAAGGGATCACTTGAGCAGCACCTCCATCTACACAGACTTCAGAAGGCTCAACTGAACGCAGGCTGGATGCAGCCTGGGCTGTGCCtt---------------------------------------
  299. i rheMac2.chr10 C 0 I 769
  300. s calJac1.Contig9263 16277 518 + 62211 CTCA---GCGTTAGGAGGTgggcaagcacttttcccccattcgacagatggagagcctgacttcagagaagctaagaccctggatccagcttccagcaagtggcagagccaggCCCACTGC-CTATACCTGTCCTTCGTCCACAGCCTCCTAGGGGAGGGGAGAGAAAACAGAAGCAGGGAAAGGCCAGTTACAAGGGAGG----TTTGTAGCAGGACTGCAAGGTGGCCTCAGCCTCCTGGCCCCTGGTGGCTGTATTTGCACATGCATACCACACCCTTTTCAGCTCTGCCCACTGCTCTCTGCACTGAACATTCTGGAACCCCAGCCACACCTCACCCATCCCCTTCCCACCAGACACTTCTATTTGCCCTTCCACCACTATTGCCCAGGCGCTACTGTCAGCTGCTCCCTTCCTGAAGGATTGTTGGAGTGGTACCTCCATTTACACAAACTTCAGAAGGCCCAACTGAGTGCAGGTTGGATGTAGCTGGGGCTGAGCCTTAGAATCACCTGGAAAACttct------------------
  301. i calJac1.Contig9263 C 0 n 789
  302. a score=420145.0
  303. s ponAbe2.chr22 13799565 564 + 46535552 TTCTCGAGAGTCAC-CCTGGGCG-TGGCG--CTCCTTCTGAAGA-CACCCCGA-GGAGTCCAGG--AG-AAGAGGAAGG-GGCTCCGGAGGA-GAGAGGATGGGAA-GATGGAGAGCAGCCCCTCCCA-CTTTTGCCAGTGGTTCCACCCCTCTTCCTCAAACAG-GGGGGTGCTCCCTGCCCGCCTCCAAGAAGCTCCTGCTTTCACCACCACG-----AAGAAA----TACCTCCGTCTAGCGCATCCAACTGGGAACCGCACTCCGGAGGACGATGCTTGGCTCCCCTTGGCACGGGTATTGTGCCTGTGCCCCT-GGGCCAGCCTTGATGCACAGTGAACCTCTGTCTTGGGAGACCTATGCCCTCTTTCCTCCCCTCTCCTTGTGATGATGAAAGTGTGCCTTCAGGCCAATggtggctcaagcctgtaatcccagcactttgagaggtagaggcaagaggatcgcttgagccccggagtccaagaccagcgtggccaacatagcgagaccccatctccacaaaaaaattaaaagtGTGCCTTTACCTCCTCCCGTGTGAAGAGCaggtaaggggtagacttt
  304. s hg18.chr22 16094980 575 + 49691432 TCCTCGAGAGTCACACCTGGGCGCTGGCGACTCCCTCCTGAAGGCCACCCCGAGGGAGTCCAGG--AGAAAGAGGAAGGAGACTCCAGAGGAGGAGAGGATGGGAAGGATGGAGAGCAGCCCCTCCCACCTCTTCCCAGTGGCTCCACCCCTCTTCCTCAAAGAGCATGGGTGTTCCCTGCCCGCCTCCAAGAAGCTCCTGCTTTCACCACCGCG------AGAAA----TCCCTCCGTCTAGCGCATCCAACTGGGAACTGCACTCCGGAGGACAATGCTTGGCTCCCCTTGGCACGGGTATTGTGCCTGTACCCCT-GGGCCGGCCTTGATGCACAGTGAACCTCTGTCTTGGGAGACCCACGCTCTCTTTCCTCCCCTCTCCTTGTGATGATGAAAGTGTGCCTTCAGGCCAATggtggctcgagcctgtaatcccagcactttgagaggtagaggcaagaggatcgcttgagccccggagtccaagaccagcgcggccaacatagcgagaccccatctctacaaaaaaATTAAAAGTGTGCCTTTACCTCCTCCCATGTGAAGAGCAGGTAAggggtagacttt
  305. i hg18.chr22 C 0 C 0
  306. s panTro2.chr22 16105989 575 + 50165558 TCCTCGAGAGTCACACCTGGGCGCTGGCGACTCCCTCCTGAAGGCCACCCCGAGGGAGTCCAGG--AGAAAGAGGAAGGAGACTCCAGAGGAGGAGAGGATGGGAAGGATGGAGAGCAGCCCCTCCCACCTCTTCCCAGTGGCTCCACCCCTCTTCCTCAAAGAGCGTGGGTGTTCCCTGCCCGCCTCCAAGAAGCTCCTGCTTTCACCACCACA------AGAAA----TCCCTCCGTCTAGCGCATCCAACTGGGAACTGCACTCCGGAGGACAATGCTTGGCTCCCCTTGGCACGGGTATTGTGCCTGTGCCCCT-GGGCCAGCCTTGATGCACAGTGAACCTCTGTCTTGGGAGACCCACGCCCTCTTTCCTCCCCTCTCCTTGTGATGATGAAAGTGTGCCTTCAGGCCAATggtggctcaggcctgtaatcccagcactttgagaggtagaggcaagaggatcgcttgagccccggagtccaagaccagcgcggccaacatagcgagaccccatctctacaaaaaaATTAAAAGTGTGCCTTTACCTCCTCGCATGTGAAGAGCAGGTAAGGGGTAGACTTT
  307. i panTro2.chr22 C 0 C 0
  308. s rheMac2.chr10 61893506 580 + 94855758 TTCCTGTGAGTCACACATGGGCGCTGGCAACTTCCTCCTGAAGGCCACCCCAAGGGAGTCGAGG--AGAAAGAGGAAGGAGACTCAGGAGGAGGAGAGGATGGGAAGGATGGAGAGCAGCCCCTCCCACCTCTTCCCGGTGGCTCCACCCCTCCTCCTCAAACAGCA----TGTTCCCTGCCCACCTCCAAGAAGCCCCTGCTTTCACCACCACCACCACAAGAAATCCCTCCCTCCGTCTAGCGCATCCAACTGGGAACCGCACTGCGGAGGACAGTGCTTGGCTCCCCTTGGCATGGGTATTGTGCCTGTGCCCCT-GGGCCAGCCTTGATGCACAGTGAACCTCTGTCCTGGGAGACCCACACCCTCTTTCCTCCCCTCTCCTTGTGATGATGAAAGCGTGCCTTCAGGACAAcggtggctcaagcctgtaatcccagcactttgagaggtagaggcaagaagatcctttgagccccggagtccaagaccagcgtggccaacatagcgagaccccacctctacaaaaaaattaaaagtGTGCCTTCACCTCCTCCCGTGTGAAGAGCAGGTAA-aggtagacttt
  309. i rheMac2.chr10 I 1718 I 1
  310. s calJac1.Contig6986 142576 549 - 144597 TCCCTGAGAGTCACACAGGGGCACTGGTGTCTCCCTCCTCAAGGCCACCCCCGGGGAGACCAGACCAGGAGAAAGAAGGTGACTCCTGAGGAGGAGAGGATGGGAAGGATGGAGAGCAGCCTCTCCTGCCTCTTCCCGGTGCCTCCACCCCTCTTCCTCAAACAGCATGGATGTTTCCTGCCCACCTCCAAGAAGCCCCAGCTTTCACCACCACA------GGAAA----CCCCTCCATCTTGCACATCCAGCCGGGAACCGCACTCCAGA--------------------------GTGCATTATGCCTGTGCCCCCGGGGTCAGCCTTGATGCACAGCGAGCCTCTGTCCTGGGAGGCCCACGCCCTCTTTCCTCCCCATCC---ATGATGATGAAAGTGTGCCTTCAGGCTAgcggtggctcacgcctgtaatcccagcagtttgggaggcagagccaagaggatcttttgagcccaggagtccaagaccagcctggccaacacagcaagaccccatgtctacaaaaaaaattaaagtGTGCCTCCACATCCTCCGGCATGAAGAGCAGGTAAGGGGTGGACTTT
  311. i calJac1.Contig6986 C 0 I 104
  312. a score=219371.0
  313. s ponAbe2.chr22 13800129 280 + 46535552 tggccccgttttatagagagaaactgaggctcacaaggaaaaa-taatctgtggacagggatac--------------accaggaagtTCCAA------GCTGAGGGTAAATTACCCTAGAGATCTGCAAAAGTTCAAGTGACGGCTGCCATAGAGGAAGTGGGTCCAGATGGGGAACAGGGCCATCTCCGCCTTCAAAACAA-CCCCAAACAGGGCTTGGAATAAGATCGACCATAggccaggcacggtggctcacgcctgtaatcctagcactttggaagtccgaggcaggcagatcaca
  314. s hg18.chr22 16095555 280 + 49691432 tggccccgttttatagagagaaactgaggctcaCAAGGAAAAA-CAATCTGTGGACAGGGATAC--------------ACCAGGAAGTTCCAA------GCTGAGGGTAAATTACCCTAGAGATCTGCAAAAGTTCAACTGATGGCTGCCATGGAGGAAGTGGGTCCAGATGGGGAACAGGGCCATCTCCGCCTTCAAAACAA-CCCCAAACAGGGCTTGGAATAAGATCGACCATAggccaggctcggtggctcacacctgtaatcctagcactttggaagtccgaggcaggcaaatcaca
  315. i hg18.chr22 C 0 C 0
  316. s panTro2.chr22 16106564 281 + 50165558 TGGCCCCGTTTTATAGAGAAAAACTGAGGTTCACAAGGAAAAACCAATCTGTGGACAGGGATAC--------------ACCAGGAAGTTCCAA------GCTGAGGGTAAATTACCCTAGAGATCTGCAAAAGTTCAACTGATGGCTGCCATGGAGGAAGTGGGTCCAGATGGGGAACAGGGCCATCTCCGCCTTCAAAACAA-CCCCAAACAGGGCTTGGAATAAGATCGACCATAggccaggcgcggtggctcacacctgtaatcctagcactttggaagtccgaggcaggcaaatcaca
  317. i panTro2.chr22 C 0 C 0
  318. s rheMac2.chr10 61894087 270 + 94855758 tggccccattttatagagagaaactgaggctcaCAAGGAAAAA-CAATCTGTGGACAGGGATAC--------------ACCGGGAAGTTCCAA------GCTGAGGG----------TAGAGATCTGCAAAAGTTCAAGTGATGGCTGCCATAGAGGAAGTGGGTCTAAATGGGGAACAGGGCCATCTCTGCCTTCAAAACAG-CCCCAAAGAGGGCTTGGAATAAGATCGACCATAggccaggcgcggtggctcacgcctgtaatcttagcactttggaaggccgaggcaggtggatcaca
  319. i rheMac2.chr10 I 1 I 154
  320. s calJac1.Contig6986 143229 300 - 144597 TGGCCCCATTTTGTAGAGAGAACCTGAGGCTCACAAGGAAAAA-CAATCCGTGGACAGGAACACACCAGGAGGAGTATACCAGGAAGTTCTCATCTTGGGCTGAGGCTAAATTACCCTAGAAATCTGGGAAAGTTCACGTGACGGCCACCATAGGGGAAGTGGGTCCAGATTGGGAACGGGGCCATCTTTGCCTTCAAAACAACCCCCAAACAGGGCTT-GAATAAGATCAACCATAggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggtggatcatg
  321. i calJac1.Contig6986 I 104 C 0
  322. a score=39288.0
  323. s ponAbe2.chr22 13800409 49 + 46535552 aggtcaggagttcgagaccagcttggccaacatggtaaaaacctgtctc
  324. s hg18.chr22 16095835 49 + 49691432 aggtcaggagttcgagaccagcttggccaacatggtgaaaccctgtctc
  325. i hg18.chr22 C 0 I 8
  326. s panTro2.chr22 16106845 49 + 50165558 aggtcaggagttcgagaccagcttggccaacatggtgaaaccctgtctc
  327. i panTro2.chr22 C 0 C 0
  328. s rheMac2.chr10 61894511 49 + 94855758 aggtcaggagttcaagaccaacttggccaacatggtgaaaccccttccc
  329. i rheMac2.chr10 I 154 I 1
  330. s calJac1.Contig6986 143529 49 - 144597 aggtcaggagttgcagaccagcctggcctacatggtgaaaccccgtccc
  331. i calJac1.Contig6986 C 0 I 101
  332. a score=44488.0
  333. s ponAbe2.chr22 13800458 60 + 46535552 taaaa---------aaaaaaaaaaaatcacccAAAGA--CCCCCTGATATTTCCCCAGCTTCTTGGCCAAG
  334. s hg18.chr22 16095892 62 + 49691432 aaaaa---------aaaaAAAAAAAATCGACCAAAGACCCCCCCTGATATTTCCCCAGCTTCTTGGCCAAG
  335. i hg18.chr22 I 8 C 0
  336. s panTro2.chr22 16106894 61 + 50165558 aaaaa---------aaaaaaaaaaaatCGACCAAAGA-CCCCCCTGATATTTCCCCAGCTTCTTGGCCAAG
  337. i panTro2.chr22 C 0 C 0
  338. s rheMac2.chr10 61894561 60 + 94855758 aaaaa---------aaaaaaaaaaaATTGACCAAAGA--CCCCCTGATATTTCCCCAGCTTCTTGGCCAGG
  339. i rheMac2.chr10 I 1 C 0
  340. s calJac1.Contig6986 143679 69 - 144597 tgagactctatctcaaaaaaaaaaaTTTGACTAAAGA--CCCCCTGATATTTCCCCAGCTTCTTGGCCAGG
  341. i calJac1.Contig6986 I 101 n 101
  342. a score=560810.0
  343. s ponAbe2.chr22 13800518 716 + 46535552 CAGGGGACGAGGTCAGGGTCTGTCTCTGTAGGATGAAGATTA-AGGACTGGGGTCTGTGCATGCCTGTGTGTATGGCCCTCGCCACCCCCATTCAACCAAGAACATCAATTTGCATCTGAAACTGTTCTATAGGTATGCCACAGCAGCCTCCTAGGCGGCATCTCTTCACCCCCAGCGCAAATGGTGAGATTT-GGGTGACTCCATCCCCCAAACGCGGAACCTGGCGAGGTCTGTGTTAAAATGTAAATTCAGGAGTCATAAATATTTTTAAAGTTGTAATACAAGCAACAGATTGTCTGGGGGCCAAAAGGATGACCTTTTACATGCAAATGAAAATAATGGATCTTTAAACGCAGTTATTGTCAGGATGATGAGCTGACTAAGACTGGAGGAAAGGAGGCCTCCTGGGTGGGCGCCAGCATGGGATAAAGAAAAGACAACCAGAGCAGAGATGAAAAAGACCGAAAGGGGATGCAAGCACCCAGGAGAGTGGACTGAGAAGTTCTAGGGGCAAGCCGGCGTGCAGAAAGAGGACCAGATTCCTGGGGTCAGTAACTAAGGATGACAATGGAGGACCCCAAGGGGCCCTCTGGGACAAAAATAGGACTGGGATGCACTATCTCAGAAACTGGATGCAGGAGCTCAAGGAAAACACCTTAGCACCGGGGCTTCCGCGTCCCCAGCACTTCTCATGCTCGGTGTTTTAACTCTCATTT
  344. s hg18.chr22 16095954 716 + 49691432 CAGGGGATGAGGTCAGGGTCTGTCTCTGTGGGACGAAGATTA-AGGACTGGGGTCTGTGCATGCCTGTGCGTATGGCCCTTGCCACCCCCATTCAACCAAGAACATCAATTTGCATCTGAAACTGTTCTATAGGTATGCCAGAGCAGCCTCCTAGGCGGCATCTCTTCACCCCCAGCGCAAATGGTGAGATTT-GGGTGACTCCATCCCCCAAACACAGAACCTGGCGAGGTCTGTGTTAAAATGTAAATTCAGGAGTCATAAATATTTTTAAAGTTGTAATACAAGAAACAGATTGTCCGGGGGCCAAAAGGATGACCTTTTACATGCAAATGAAAATAATGGATCTTTAAACGCAGTTATTGTCAGGATGATGAGCTGACTAAGACTGGAGGAAAAGAGGCCTCCTGGGTGGGCGCCAGCGTGGGATAAAGAAAAGACAACCAGAGCAGAGATGAAAAAGACCGAAAGGGGATGCAAGCACCCAGGAGAGTGGACTGAGAAGTTCTAGGGGCAAGCCGGCGTGCAGAAAGAGGACCAGATTCCTGGGGTCAGTAACTAAGGATGACAATGGAGGACCCCAAGGGGCCCTCTGGGACAAAAATAGGACTGGGATGCACTATCTCAGAAACTGGATGCAGGAGCTCAAGGAAAACACCTTAGCACCGGGGTTTCCATGTCCCCAGCACTTCTCACGCTCAGTGTTTTAACTCTCATTT
  345. i hg18.chr22 C 0 C 0
  346. s panTro2.chr22 16106955 716 + 50165558 CAGGGGATGAGGTCAGGGTCTGTCTCTGTGGGACGAAGATTA-AGGACTGGGGTCTGTGCATGCCTGTGTGTATGGCCCTTGCCACCCCCATTCAACCAAGAACATCAATTTGCATCTGAAACTGTTCTATAGGTATGCCAGAGCAGCCTCCTAGGCGGCATCTCTTCACCCCCAGCGCAAATGGTGAGATTT-GGGTGACTCCATCCCCCAAACACGGAACCTGGCGAGGTCTGTGTTAAAATGTAAATTCAGGAGTCATAAATATTTTTAAAGTTGTAATACAAGAAACAGATTGTCCGGGGGCCAAAAGGATGACCTTTTACATGCAAATGAAAATAATGGATCTTTAAACGCAGTTATTGTCAGGATGATGAGCTGACTAAGACTGGAGGAAAGGAGGCCTCCTGGGTGGGCGCCAGCATGGGATAAAGAAAAGACAACCAGTGCAGAGATGAAAAAGACCAAAAGGGGATGCAAGCACCCAGGAGAGTGGACTGAGAAGTTCTAGGGGCAAGCCGGCGTGCAGAAAGAGGACCAGATTCCTGGGGTCAGTAACTAAGGATGACAATGGAGGACCCCAAGGGGCCCTCTGGGACAAAAATAGGACTGGGATGCACTATCTCAGAAACTGGATGCAGGAGCTCAAGGAAAACACCTTAGCACCGGGGCTTCCGTGTCCCCAGCACTTCTCACGCTCAGTGTTTTAACTCTCATTT
  347. i panTro2.chr22 C 0 C 0
  348. s rheMac2.chr10 61894621 672 + 94855758 CAGGGGACAAGGTCAGGGTCTGTCTCTGTG----------------------------------------GTATGGCCCTTGCCACCCCCATTCAACCAAGAACATCAATTTGCATCTGAAACTGTTCTATAGGTATGCCAGAGCAACCTCCTAGGCAGCATCTCTTCACCCCCAGCGCAAATGGTGAGATTTGGGGTGACTCCATCCCCCAGACGCGGAACCTGGCGAGGTCTGTGTTAAAATGTAAATTTAGGAGTCATAAATATTTTTAAAGTTGTAACACAAGCAACAGATTGTCCGCGGGCCAAAAGGATGACCTTTTACATGCAAATGAAAATAATGGATCTTTAAATGCAGTTATTGTCAGGATGATGAGCTGACTAAGACTGGAGGAAAGGAGGCCTCCTGGGTGGGCTCCAGCA----GTAAAGGAAAGACAACCAGAGCAGAGATGAAAAAGACCGAAAGGGGATGCAAGAACCCA-GAGAGTAGACTGAGAAGTTCTAGGGGCAGGCCGGCGTGCAGAAAGAGGACCAGATTCCTGAGGTCATTAACTAAGGATGACAATGGAGGACCCCAAGGGTCCCTCTGGGACAAAAATAGGACCGGCACGCACTGTCTCAGAAACTGGATGCAGGAGCTCAAGGAAAACACCTTAGCACC-AGGCTTCCGTGTCCCCAGCACTTCTCACGCTCAGTGTTTTAACTCTCATTT
  349. i rheMac2.chr10 C 0 C 0
  350. s calJac1.Contig13114 2 679 + 38599 CAGGGGACAAGGTCAGGGTCTGCCCCTGCGGGCTGAAGATCAGGGGACTGGGATCTGTGCATGCCTATGTGTACGGCCCTTGCCACCCCCATTCAACCAAGAACATCAATTTGCATCTGAAACTGTTCTATAGGTATGCCAGGGCAAGCTCCT-GGCGGCAGCTCTTCATCCCCAGCGCAAAAGGTGAGATTTGCGGGGACTCCATCCCCCAAACGTGGAACCTGGCGAGATCTGTGTTAAAATGTTAATTCAGGGGTCATAAATATTTTTCAAGTTGTAATACAAGCAACAGATTGTCAGGGAGCCAAAAGGATGACCTTTTACATGCAAATGAAAATAATGGATCTTTAAACGCAGTTATTGTCAGGATGATGAGCTG----AGACTGGAGGAAAGGAGGCCTCCTGGGTGGGCTCCGGCATAGGATTAAAAA---------------------AAAAAGACCAAAAGGGGATGCAATTACCCAGGAGAGTGGACTGAAAAATTCCAGGGGCAAGCCAGGGGGCAGAAAGGGGACCAGATTCCTGGGGGCAGTAACTAAGGATGACAAAGGAGGA-CCCAAGGGGCCCTCTGGGACAAAAGTAT--CTGGGATGCACTATCTCGGAAACTGGATA---------AAGAAAAACACCTTAGCCCC-AGGCCTTCCCCTTCCCAGCACGTCTCACACTCAGTGTTGTAACTCTCATTT
  351. i calJac1.Contig13114 n 101 C 0
  352. a score=124476.0
  353. s ponAbe2.chr22 13804325 151 + 46535552 ACTGAGAAGTTCTAGGGGCAAGCCGGCGTGCAGAAAGAGGACCAGATTCCTGGGGTCAGTAACTAAGGATGACAATGGAGGACCCCAAGGGGCCCTCTGGGACAAAAATAGGACTGGGATGCACTATCTCAGAAACTGGATGCAGGAGCTC
  354. s rheMac2.chr10 61895071 151 + 94855758 ACTGAGAAGTTCTAGGGGCAGGCCGGCGTGCAGAAAGAGGACCAGATTCCTGAGGTCATTAACTAAGGATGACAATGGAGGACCCCAAGGGTCCCTCTGGGACAAAAATAGGACCGGCACGCACTGTCTCAGAAACTGGATGCAGGAGCTC
  355. i rheMac2.chr10 I 1204 C 0
  356. s calJac1.Contig5889 64703 148 + 156393 ACTGAAAATTTCTAGGGGCAAGCCAGGGGGCAGAAAGGGGACCAGATTCCTGGGGTCAGTAACTAAGGATGACAAAGTAGGA-CCCAAGGGGCCCTCTGGGACAAAAGTAT--CTGGGATGCACTATCCCAGAAACTGGATGCAGGAGCTC
  357. i calJac1.Contig5889 I 3530 I 317
  358. s hg18.chr22 16096447 151 + 49691432 ACTGAGAAGTTCTAGGGGCAAGCCGGCGTGCAGAAAGAGGACCAGATTCCTGGGGTCAGTAACTAAGGATGACAATGGAGGACCCCAAGGGGCCCTCTGGGACAAAAATAGGACTGGGATGCACTATCTCAGAAACTGGATGCAGGAGCTC
  359. i hg18.chr22 I 1123 C 0
  360. s panTro2.chr22 16107448 151 + 50165558 ACTGAGAAGTTCTAGGGGCAAGCCGGCGTGCAGAAAGAGGACCAGATTCCTGGGGTCAGTAACTAAGGATGACAATGGAGGACCCCAAGGGGCCCTCTGGGACAAAAATAGGACTGGGATGCACTATCTCAGAAACTGGATGCAGGAGCTC
  361. i panTro2.chr22 I 1115 C 0
  362. a score=21068.0
  363. s ponAbe2.chr22 13801397 55 + 46535552 ccagacaatgtaataacatagcaggtactgggggcatggtccctgtcctcatgac
  364. s hg18.chr22 16096670 55 + 49691432 CCAGACAATGTAATAACATAGCGGGTACTGGGGGTGTGGTCCCTGTCCTCATGAC
  365. i hg18.chr22 C 0 C 0
  366. s panTro2.chr22 16107671 30 + 50165558 CCAGACAATGTAATAACATAGCAGGTACTG-------------------------
  367. i panTro2.chr22 C 0 N 0
  368. s rheMac2.chr10 61895453 33 + 94855758 ---------------------caggtactgGGGGTATGGTCCCTGTCCTCAGGA-
  369. i rheMac2.chr10 C 0 C 0
  370. s calJac1.Contig13114 839 55 + 38599 GCAGACAATGTAACGACAAAGCGGGTACTGGGGGTATGGTCCCCGTCCTCGAGAC
  371. i calJac1.Contig13114 C 0 C 0
  372. a score=85688.0
  373. s ponAbe2.chr22 13804804 130 + 46535552 attacacgg----aaatacatttaggatatggaaggaaaggaacaacaaaggagggagaaccaacccagggcagg------gggtgcaggattgtttcccaccagaaacgacactcacaatgagatgcagggtggatagg
  374. s hg18.chr22 16096764 122 + 49691432 ATTACATGG----AAATACATTTAGGATATGGAAGGAAAGGAACAAcacaggagggagacccaacccagggcagg------gggtgcaggattgtttcccaccagaaatgacattcacaa--------aggatggatagg
  375. i hg18.chr22 C 0 C 0
  376. s panTro2.chr22 16107765 130 + 50165558 ATTACACGG----AAATACATTTAGGATgtggaaggaaaggaacaacacaggagggagacccaacccagggcagg------gggtgcaggattgtttcccaccagaaatgacattcacaaagagatgcaggatggatagg
  377. i panTro2.chr22 C 0 C 0
  378. s rheMac2.chr10 61895524 137 + 94855758 ATTACATGA-TATAGTTACATTTAGAACACGGAAGGAAAGGAACAAcacaggagggagaccccacccagggccgggggggagggggcaggattgtttcccgccggaaatgacgct--caatgagatgcaggatggatagg
  379. i rheMac2.chr10 C 0 C 0
  380. s calJac1.Contig5889 65168 134 + 156393 ATTACATGGAAAGAATTACATTTAGGGTGTGGAAAGAAAGGAATAAAAcaggagagagatccaacccagagtagg------gggtgcagaattctttcccacaggaaatgactctgacagtgagaagcaggatggctaga
  381. i calJac1.Contig5889 I 317 I 8728
  382. a score=208716.0
  383. s ponAbe2.chr22 13804934 292 + 46535552 agttggccagcaggagaagcagcctttcaggcccaggg-gaaagtgtgtgcaaaggtcctgaggtgaaaagcttaagaaactgaaaaagggattggggtgggggggtagcaaagaaaagt-ggtGTgctgggcatggtagctcacacctataatcccagcactttgggaggcccagacaggaggatcacttgaggactggagtttaagaccagcctgggcaccacagggagaccacatctcta-aaacaaattaaaaaa----------------------ttagccaggcatggtggcatgcatctatagtcccag
  384. s hg18.chr22 16096886 288 + 49691432 agttggccagcaggagaagcagactttcaggcccagggagaaagtgtgttcaaaggtcctgaggtgaaaagcttaagaaactgaaagaggga------tggggggatagcaaagaAAAGT-GGTGTgctgggcatggtagctcacacctacaaccccagcactttgggaggcccaggcaggaggatcacgtgaggactggagtttaagaccaggctgggcaccacagggagaccacatctctacaaacaaattaaaaaa----------------------ttagccaggcatggtggcacgcatctatagtcccag
  385. i hg18.chr22 C 0 C 0
  386. s panTro2.chr22 16107895 287 + 50165558 agttggccagcaggagaagcagcctttcaggcccaggg-gaaagtgtgttcaaaggtcctgaggtgaaaagcttaagaaactgaaagaggga------tgggggggtagcaaagAAAAGT-GGTGTgctgggcatggtagctcacacctacaatctcagcactttgggaggcccaggcaggaggatcacgtgaggactggagtttaagaccaggctgggcaccacagggagaccacatctctacaaacaaattaaaaaa----------------------ttagccaggcatggtggcacgcatctatagtcccag
  387. i panTro2.chr22 C 0 C 0
  388. s rheMac2.chr10 61895661 279 + 94855758 agttggtcagcaggagaagcagcctttcaggcccaggg-gaaagtgtgtgcaaaggtcctgaggtgaaaaGCGTAAGGAACTGAAAGAGGGG------TGGGGGG-TAGCAAAGAAAAGT-GGTATGTTgggcatggtagcccacacctataatcccagcac-ttgggaggcccaggcaggaggatcacatgaagactggagttgaagaccagcctgggcaccacagggagaccacatctctacaaacaaattaaaaaa----------------------ttagccaggtgtggtggcacgtgtctgcag------
  389. i rheMac2.chr10 C 0 C 0
  390. s calJac1.Contig13114 1051 307 + 38599 AGTCGGCCAGCAGGAGAAGCGGCCTTCCTGGGCCAGGG-GAAAGTGCGTGCAAAGGTCCTGAGGTAAAAGTCTTAAGGAACTGAAAGAGGAA------TGGGGG--TAGCAAAGAAAAGTAGGTAggccgggcatgatagctcacacctgtaatcccagcactttcggaggcccagacaggaggatcacgtgaggactggagtttaagaccagcctgggtgacagagtgacatctcatctcaa-aaagacaccaaagaaaGCGAGTAAAGAATATGTGATGTTTgccaggcgcggtggctcaagcctgtaatcccag
  391. i calJac1.Contig13114 C 0 I 127
  392. a score=742310.0
  393. s ponAbe2.chr22 13805226 1026 + 46535552 gtactcccagctactcaggaggctgaagtgggaggatcccttgagcccaggagttcgaggctgtggggagccatgatcgca-cactgcactacag-----cctg------ggtgac-gagtaagaccccatctcaaaaaaaaaaaaaaaaaa-------------------------------------------------------------------------agga----------------------------------------aaGTGAGTGAAGAATATGCAATGCCAAGTGAGAAGTGACAGCTCATATTAACCCCCATCTGGAAGCTGTGCTCCATCTGATGCAGAGAGAATAGAAAGAAATCCATCCCAGTGGATTGAAATAGCTCC------------tttttttttttgagacggagtttcactc--attgcccaggctggagtgcaatggtgtgatattagccca---------ccgcaacctctgcctcccaggttcaagcgattcttctgcctcagcctcctaagtagctgggattacaggcatgctccaccacatctggctaa-----ttttgtattttgggtagagatagggtttctccatgttggtcaggctggtctcgaactcccgacttcaggcgatccacccccc--ttggcctcccaaagtgctgggatttcaggtgtgagccaccatgcccggccCGAAATAGCTCTTAAATCTATTTTGTTGTTTATTAAAGCCATGGTTTGTGCTTTCCTGATCTTCCCAGAGTTCTAGGCCTTGCCTTGGCTTTTCATTCTGCTTCTCCCCAGCCCCTGAACCCAGCCTGGAGGACAGCCCTGGTTCTTTGGATGGATGGATGGATGTCTGTTTGATGATGAATG------------------------------------------------------TGCAGTCACTGCCCACCGTGAGTTTTTTGCAGTGGTGATAGAAGGCTTGGAGGGATGGGTACTTATCCCCAGTCAGTCATCAGAGAGCCCTTCAGGAGACATCACTCATTTCTGTCTCATAAT-GAAACTGAAAGTTGAGACCTCTGTGGAATAAAATAGGAAGGACAGAAAACTTCTGGTCCTGGGGCTGAGGTTGGGTGGT-GGGGA-GGGGGCAGGAAATTGGCTTCAGCCGAGACCCTGATTGTGCATGCCTTGAGAGGCCAAGCCCTGCGGTTAGCTGA
  394. s hg18.chr22 16097174 1029 + 49691432 gtactcccagctactcaggaggctgaggtgggaggatcccttgagcccaggagttcaaggctgtggggagccatgatcgca-cactgcactacag-----cctg------ggtgacagagtgagaccccatctc-aaaaaaaaaaaaaaaaa-------------------------------------------------------------------------agga----------------------------------------aaGTGAGTAAAGAATATGCGATGCCAAGTGAGAAGTGACAGCTCATATTAACCCCCATCTGGAAGCTCTGCTCCATCTGATGCAGAGAGAATAGAAAGAAATCCGTCCCAGTGGATTGAAACAGCTCC------tttttttttttttttttgagagggagtttcactc--attgcccaggctggagtgcgatggcgtgatcttagctca---------ccgcaacctccgcctcccagctttaagcgattctcctgcctcagcctcctaagtagctgggattacaggcatgctccaccacatccagctaa-----ttttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcaaactcccgacctcaggcgatccgcccccc-tttggcctcccaaagtgctggaatttcaggtgtgagccaccacgcccggccAGAAATAGCTCTTAAATCTATTTTATTGTTTATTAAAGCCATGGTTTGTGCTTTCCTGGTCTTCCCAGAGTTCTAGGCCCTGCCTTGGCTTCTCAGTTTGCTTCTCCCCAGCCCCTGAACCCAGCCTGGGGGACAGCCCTGGTTCTC----TGGATGGATGGATGTCTGTCTGCTGATGAATG------------------------------------------------------TGCAGTCACTGCCCACTGTGAGTTTTTTGCAGTGGTGATAGAAGGCTTGGAGGGGTGGGTACTTATCCCCAGTCAGTCATCAGAGAGCCCTTCAGGAGACGTCACTCATTTCTGTCTCATAAT-GAAACTGAAAGTTGAGACCTCTACGGAATAAAATAGGAAGGACAGAAAACTTCTGGTCCTGGGGCTGAGGTTGGGTGGT-GGGGA-GGGGGCAGGAAATTGGCTGCAGCCAAGACCCTTATTGTGCATGCCTTGAGAGGCCAAGCCCTGCAGTCAGCTGA
  395. i hg18.chr22 C 0 C 0
  396. s panTro2.chr22 16108182 1026 + 50165558 gtactcccagctactcaggaggctgaggtgggaggatcccttgagcccaggagttcaaggctgtggggagccatgatcgca-cactgcactacag-----cctg------ggtgacagagtgagaccccatctc---aaaaaaaaaaaaaaa-------------------------------------------------------------------------agga----------------------------------------aaGTGAGTAAAGAATATGCGATGCCAAGTGAGAAGTGACAGCTCATATTAACCCCCATCTGGAAGCTCTGCTCCATCTGATGCAGAGAGAATAGAAAGAAATCCGTCCCAGTGGATTGAAACAGCTCC-------ttttttttttttttttgagagggagtttcactc--attgcccaggctggagtgcgatggcgtgatcttagctca---------ccgcaacctccgcctcccaggtttaagcgattctcctgcctcagtctcctaagtagctgggattacaggcatgctccaccacatccagctaa-----ttttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcaaactcccgacctcaggcgatccgcccccc-tttggcctcccaaagtgctgggatttcaggtgtgagccaccacgcccggccCGAAATAGCTCTTAAATCTATTTTATTGTTTATTAAAGCCATGGTTTGTGCTTTCCTGATCTTCCCAGAGTTCTAGGCCCTGCCTTGGCTTCTCAGTCTGCTTCTCCCCAGCCCCTGAACCCAGCCTGGGGGACAGCCCTGGGTCTC----TGGATGGATGGATGTCTGTCTGATGATGAATG------------------------------------------------------TGCAGTCACTGCCCACTGTGTGTTTTTTGCAGTGGTGATAGAAGGCTTGGAGGGGTGGGTACTTATCCCCAGTCAGTCATCAGAGAGCCCTTCAGGAGATGTCACTCATTTCTGTCTCATAAT-GAAACTGAAAGTTGAGACCTCTACGGAATAAAATAGGAAGGACAGAAAACTTCTGGTCCTGGGGTTGAGGTTGGGTGGT-GGGGA-GGGGGCAGGAAATTGGCTGCAGCCAAGACCCTTATTGTGCATGCCTTGAGAGGCCAAGCCCTGCAGTCAGCTGA
  397. i panTro2.chr22 C 0 C 0
  398. s rheMac2.chr10 61895940 1072 + 94855758 ----tctcagctactcaggaggctgaggtgggaggatcccttgagcccaggagttcaaggctgtggggagccatgatcgca-cactgctctataggagtacctg------ggtgactgagtgagaccccatctc----aaaaaaaataaaca-------------------------------------------------------------------------agga----------------------------------------aaGTGAATAAAGAATATGCGATGCCAAGTGAGAAGTGACAGCTCATACTAACCCCCATCTGGAAGCTAGGCTCCATCTGATGCAGAGAGAACAGAAAGAAATCCATCCTAGTGGGTTGAAATAG-----------ttttttttttttttttgagacagcgtttcactc--tttgcccaggctggagtgcaatggcgtgatctccactcaccacaacctccacaacctccgcctcccaggttcaagtgattctcttgcctcagcctcttgagtagcagggattacagg-atgctccaccacacccggctaa-----ttttgtgtttttagtagagacagggtttctccatgttggtcaggctggtctcaaactcccgacctcagacgatccgctccccactcggcctcccaaagtgctggaatttcaggcgggagccaccacgcccggccCGAAATAGCTCTTAAATCCATTGTATTGTTTATTAAAGCCATGGTTTGTGCTTTCCTGATCT---CAGGGTTCTAGGCTCTGCCTTGGCTTCTCAGTCTGCTTTTCCCCAGCCCCTGAACCCAGCCTGGGGGACAGCCCCGGTTCTC--------TGGATGGATGTCTGCGTGAAGATGAACGtgcagacactgcccactgcgatttttttgcagacacttctcaccgtgagatttttgcagacactgcccactgtgagttttttgcagCAGTGATAGAAGGCTTGCAG----GGGTACTTATCTCCAGTCAGTCATCAGAGAGCCCTTCAGGAGACGTCACTCATTTCTGTCTCATAAT-GAAACTGAAAATTGAGACCTCTATGGAATAAAGTAGGAAGGACAGAAAA---CTGGTCCTGGGGCTGAGGTTGGGTGGCGGGGGA-GGGAGCAGGAAATTGGCTTCAGCCAAGACCCTGATTGTGCGTGCCTTGAGAGGCCAAGCCCTGCAGTCAGCTGA
  399. i rheMac2.chr10 C 0 C 0
  400. s calJac1.Contig13114 1485 1152 + 38599 atagtcccagctactcaggaggctgaggcagaagaattgcttgaaccagggaggcagaggttgcagtgagccaaggtcgcaccactgcactccag-----cctggcacctggcgacggagcaagactctgtctc---aattaaaaaaGGATATGTccgggcgcagtggctcacacctgtaatcctagcactttgggaggctgagatgggtggatcaccagaggtcaggagttcaagaccagcctggccaccatggtgaaaccccatcttaaaaaAAAAAAGAATATGTGATGCCAAGTAAGAAGTGACAGCTCATATGAACCCCCATCTGGAAGCTCTGCTCCATCTGATGCAGGGAGAATAGAAAGAAAGCCATCCCAAAGGATTGAAATAGttgttttttgttgttttgtttttatttgagacgcagttttgctcctgttacccaggctggagtgcaatggcatgatctcagctca---------ctacaacctccgcctcctgggttcagtcaattctcctgcctcagcctcccgagtagctgggactacaggcacgcgccaccatgcccagctaatttttttttgtatttttagtagagatggaatttcaccatgttgaccagggtggtctcgatctcttgacctca--tgatccacccacc--tcggcctcccgaagtgctgggattacaggcgtgagccaccgcgcccggccTGAAATAGTTCTTAAATCTGTTCTATTGTTTATCAAAGCCATGGTTTATGCTTTCCTGATCTTCCCAGGGTTCCAGGCCCCGCTTTGGCTTCTCCGTCTGCTTCT-CCAAGCCCCTGAACATGGCCTGGGGGATAGCCCTGGTCCTC--------TGGATGGATGTCTGTCTGATGACGAATG------------------------------------------------------TGCAGTCACTGCCCACTGTGAGTTTTTTGCGGTGGTGGCAGGAGGCTTGAGG--GTGGGTACTTATGCCCAGTGAGTCATCAGAGAGCCGTTGAGGAGTCATCACTCATTTCTGTCTCATAATAAAAACTGAAAGTTGAGTCCTCTACAGAATAAAATAGGAAGGGCAGAAAACTTCTGGTTCTGGGGCTGAGGTTGGGTGGC-GGGGACATGGGCAGGAAATTGACTTCAGCCTAGACTCCGGTTGTGTGTGGCTTGAGAGGCTGAGCCCAGCTGTCAGCTGA
  401. i calJac1.Contig13114 I 127 I 341
  402. a score=27399.0
  403. s ponAbe2.chr22 13806252 33 + 46535552 GCTTGCTATTTTAGGTGAGGAGATCAGCCTTCA
  404. s hg18.chr22 16098203 33 + 49691432 GCTTGCTATTTTAGGTGAGGAGATCAGCCTTCA
  405. i hg18.chr22 C 0 C 0
  406. s panTro2.chr22 16109208 33 + 50165558 GCTTGCTATTTTAGGTGAGGAGATCAGCCTTCA
  407. i panTro2.chr22 C 0 C 0
  408. s rheMac2.chr10 61897012 33 + 94855758 GCTTGCTATTTTAGGTGAGGAGATCAGCCTTAA
  409. i rheMac2.chr10 C 0 C 0
  410. s calJac1.Contig5889 74030 33 + 156393 GCATGCAACTTCAGGTGAGGAGATCAGCCTTAA
  411. i calJac1.Contig5889 I 8728 n 341
  412. a score=409270.0
  413. s ponAbe2.chr22 13806285 517 + 46535552 GAATCAGCTTATGAGTCTTCAGACACCTGACGACAAT---GCAGAAAACAGGAGAGGAGGAGGGACTGGCCAGGGAGCCGGAGGCCTCCAAAGGGCCAGAGGAAAGGGCCCTTGTGGGCAACAGCGTAAACACCACCCAGAAGATGAGCGGGGACGACAGTTCAGGCCCTGCAAGAGGAATGTCTTCTGGTCAGAGTGTCAAGGCGGGTGGGTGCAGGGGCTTGGGGCCGAGTGGCAGCTTGCCCA-TCTGGTGACTGCAACTGACAGGCACCATTCACATGGACTGGGTT--------------GGTGTGCACTGGGGCTGACCAGTGTCCTACAGAAAAGCTGAGAATGCTTAGGCAGCACTGAAACAACATTTAGGTTCAGCAATGACACAGATTCACAGATTTAAGCAAAAGCCTCCATTTTCTGGGCCATCAAACTGCCCATGGACAAGTTGTGTACCCACAAGAGACTGTTACCACCCCAACTTGCCTCTAGCCTTAGAGATGTTAGAGTAAAAAACAAAAATCAGTGG
  414. s hg18.chr22 16098236 517 + 49691432 GAATCAGCTTATGAATCTTCAGACACCTGACGACAAC---CCAGAAAACAGGAGAGGAGGAGGGACTGGCCAGGGAGCCGGAGGCCTCCAAAGGGCCAAAGGAAAGGGCCCTTGTGGGCAAGAGCATAAACACCACCCAGAAGATGAGCGGGGATGACAGTTCAGGCCCCGCAAGAGGAATGTCCTCTGGTCAGAGTGTCAAGGCCGGTGGGTGCAGGGGCTTGGGGCCGAGTGGCAGCTTGCCCA-TCTGGTGGCTGCACCTGACAGGCACCGTTCACATGGACTGGGTT--------------GGTGTGCACTGGGGCTGACCAGTGTCCTACAGAAAAGCTGAGAATGCTTTGGCAGCACTGAGACAACATTTAGGTTCGGCAATGACACAGATTCACAGATTTAAGCAAAAGCCTCCATTTTGTGGGCCATCAAACTGCCCATGGACAAGTTGTGTACCCACAAGAGACTGTTACCACCCCAACTTGCCTCTAGCCTTAGAGATGTTAGAGTAAAAAACAAAAATCAGTGG
  415. i hg18.chr22 C 0 C 0
  416. s panTro2.chr22 16109241 517 + 50165558 GAATCAGCTTATGAATCTTCAGACACCTGACGACAAC---GCAGAAAACAGGAGAGGAGGAGGGACTGGCCAGGGAGCCGGAGGCCTCCAAAGGGCCAAAGGAAAGGGCCCTTGTGGGCAAGAGCATAAACACCACCCAGAAGATGAGCGGGGATGACAGTTCAGGCCCTGCAAGAGGAATGTCCTCTGGTCAGAGTGTCAAGGCGGGTGGGTGCAGGGGCTTGGGGCTGAGTGGCAGCTTGCCCA-TCTGGTGGCTGCACCTGACAGGCACCGTTCACATGGACTGGATT--------------GGTGTGCACTGGGGCTGACCAGTGTCCTACAGAAAAGCTGAGAATGCTTTGGCAGCACTGAGACAACATTTAGGTTTGGCAATGACACAGATTCACAGATTTAAGCAAAAGCCTCCATTTTGTGGGCCATCAAACTGCCCATGGACAAGTTGTGTACCCACAAGAGACTGTTACCACCCCAACTTGCCTCTAGCCTTAGAGATGTTAGAGTAAAAAACAAAAATCAGTGG
  417. i panTro2.chr22 C 0 C 0
  418. s rheMac2.chr10 61897045 531 + 94855758 GAATCAGCTTATGAATCTTCAGACACCTGACAACAAC---GCAGAAAACAGGAGAGGAGGAGGGACTGGCCAGAGAGCCGGAGGCCTCCAAAGGGCCAAAGGAAAGGGCCCTTGTGACCAAGAGCATAACCACCACCCAGAAGACGAGCGGGGACAGCAGTTCAGGCCCTGCAAGAGGAATGTCCTCTGGTCGGAGTGTCAAGGCGGGTGGGTGCAGGGGCTTGGGGTTGAGCGGCAGCTTGCCCA-TCTGGTGGCTGCACCTGAGAGGCACCATTCACATGGACTGGGTTGGTGGCACCCCTGGGGTGTGCACTGGGGCTGACCAGTGTCCTACAGAAAAGCTGAGAATGCTTTGGCAGCATTGAGACAACATTTAGGTTCGGCAATGACTCAGATTCCCAGATTTAAGCACAAGCCTCCATTTTCTGGGCCATCAAACTGCCCACGGACAAGTCATGTATCCACAAGAGACTGTCACCACCCCAACTTGCCTCTAGCCTTAGAGACGTTAGAGTAGAAAACAAAAATCAGAgg
  419. i rheMac2.chr10 C 0 I 3435
  420. s calJac1.Contig13114 2978 504 + 38599 gaaTCAGCTTATGAATCTTCAGACACCTGACGATGATGAAGCAGAAAACAGGAGAGGAGGAGGGACTGGCCAG---------------------------GGAAGGGGGCGTCACGGGCAAGAGCATAAACACCACCCAGATAATGA--GAGCACAGCAGTTAAGGGCCAGCCAGAGGAATGTCCTCTGGCCGGAGTGTCAAGGCGAGTGGGTGCAGGGGCTTGGGGCCAAATGGCAGCTTGCCCATTCTGGTGGCTGCACTTAAGAGGCACCATTCACATGGACTGGGTTGGTGGCACCCCGG-GGTGTGCAGTGGGGCTGACCAGTGTCCTACAGAAAAGCCGAGAATGCTTTAGCAGCATTGAAACAACATTTAGGTCTGGCAGTGACTCAGATTCACAGGTTTAAGCAAAAGCCCCCATTTTCTGGGCCATCAAACTACCCATGGACAAGCTGAATGCCCACAAGAGAGTGTTACCCCTGCAACTTGCCTCTAGCCTCAGAGATGTTCGAGGAAAACAC-AGAATCAGTGG
  421. i calJac1.Contig13114 I 341 C 0
  422. a score=797233.0
  423. s ponAbe2.chr22 13810659 1089 + 46535552 CTGTTGTGCGTCGCCTGTCTTTCTCCCAGACATTGTTGGAATTCCCACCTCCACATGCCCACCCCTAGATCCAGCTTCCTGGCTGGTGCCTGGGAGCGTGGCTTCTGCCCACCCACTGGCCTGGCCTCAGAGGTCTGCCCTACCC---------------TGATGCTAGCAACTGCTCAGACTAGGCAGCCCGTCGATGGAACTCCCTGATGCTGTCCTCCCATGCAAAGAGAATGGAGCCCTGGAAGAAGGCTCTCTGGAGTCACCCCAACACAACACCGTGTAAGCCTTGCACTTCCTTGCAGTGTGGCAGGGCACATCTCACATGGGTGCTTGCAGGGATGTGGAGGTGGGAATGTGAGAGGGTGGGGAGCGGTGTGGAGTGGCCAGGATCCAGGGGAGAATG-CCCCACGGAGACAGAGACCCTTGGCTTGGTATGAAGGGAG-CATAAGAAGGAGTAAATCCAGGACACGGCTAGGCTGTGGCACCCCTTTGGGAGTGCCCGCACATAGGGACACATGACCTT-GGGGAATTCTGGACAGCTTAGGGGCTTACTCCGTGACAGAAGATACTTCCCTTCTGGAGACCTCAACTTCTCTCtgtgttagttggctgaggctgccatcacacaatatcacaatcttggtgactcaaaacacagaaacgtatttcctcacagttccatgggctggaagtccaagaccaaactgttgacaagcttggtttcttctgaggcctctcctcagtgtgccaacaagcacccttgccgtctcttccccctccgaatttcctgttcccataaggacgcctgtcagattagattaggcccaccctaagggcctccttttaatttaatcacctctttaaaggtcctatctccaagtacagtcaccttttgaggtactgagcattaaggcttcaacacatgagtttggggccaggcgtggtggctcacacctataaccccaacacattaggaggctgagatgggaggatcccttgagcccaggaggtcgaggct-cagtgagctatgatcatgccacttcactccagcctgggcaacagagcaagacgctgtctcaaaaca---------------aaacaaaca---aaacaaaa
  424. s rheMac2.chr10 61901011 1090 + 94855758 ctgtttTGTCTCGCCTGTCTTTCTCCCAGACATTGTTGGAATTCCCACCTCCACGTGCCCACCCCTAGATCCAGCTTCCTGGCTGATGCCTGAGAGCGTGGCTTCTGCCTGTCCACTGGCCTGGCTTCAGGGGTCTGCGCTACCC---------------TGATGCTAGCAACTGCTCAAACTAGGCAGCCCGTGGATGGAACTGCCTGAAGCCGTCCACCCATGCAAAGAGAAGGGAGCCCTGAAAGAAGGCTCTCTGGAGTCACCCCAACACAACATCGTGTGAGCCTTGCACTTCTTTGCAGGGTGGCAGGGCACGTCTCACAT-GGTGCTTGCAGGGATGTGGAGGTGGGAGTGTGAGAGGCTGGGGAGGGGTGTGGAGTGGCCAGGATCCAGGGGAGAATGCCCCCACAGAGACAGAGACCCTTGGCTTGGTATGCAGGGAGCCATAAGAAGGAGTAAATCCAGGACACGGCTAAGCTGTGGCACCCCTTTGAGAGCGCCCACACATAGGGACACGTGACCTT-GGGGAATTCTGGACAGCTTAGAA--------------ATAAGATACTTCGCTTCTGGAGGCCTCA---CCTCTCtgtgttag-tggctggggctgccatcaccaaatatcacaatcttggtgactcaaaaaacagaaacgtattttctcacagctccataggctggaagtccaacatcaaagtgctgacaagcttggtttcttctgaggcctctcctcagtgtgccagcaagcacccttgctgtctcttcccactccgaatgtcctgttcccataaagtcgccagtcagattagattaggcccaccctaagggcctccttttaattcagtcacctctttaaagctcctatctccaagtacagtcaccgtttgaggcactgagcattagggctttaacacatgcgttttgggccaggtgtggtggctcacacctacagccccaacacactgggaggctgagatgggaggatcccttgagcccaggaggtcgaggct-cagtgagctatgatcgtgccactgcactccaacctgggcaacagagcaagaccccgtctcaaaataaataaataaataaataaataaataaataaataaat
  425. i rheMac2.chr10 I 3435 C 0
  426. s panTro2.chr22 16113512 1075 + 50165558 CTGTTGTGCCTCACCTGTCTTTCTCCCAGACATTGTTGGAATTCCCACCTCCACATGCCCACCCCTAGATCCAGCTTCCTGGCTGGTGCCTGGGAGCGTGGCTTCTGCCCGCCCACTGGCCTGGCCTCAGAGGTCTGCCCTACCC---------------TGACGCTAGCAACTGCTCAGACTAGGCAGCCCGTGGATGGAACTGCCTGATGCTGTCCTCCCATGCAAAGAGAATGGAGCCCTGGAAGAAGGCTCTCTGGAGTCACCCCAACAAAACACCGTGTGAGCCTTGCACTTCCTTGCAGTGTGGCAGGGCACATCTCACATGGGTGCTTGCAGGGATGTGGAGGTGGGAATGTGAGAGGGTGGGGAGGGGTGTGGAGTGGCCAGGATCCAGGGGAGAATG-CCCCACGGAGACAGAGACCCTTGGCTTGGTATGAAGGGAG-CACAAGAAGGAGTAAATCCAGGACACGGCTAGACTGTGGCACCCCTTTGGGAGTGCCCGCACTTAGGGACACATGACCTT-GGGGAATTCTGGACAGCTTAGGGGCTTACTCCATGACAGAAGATACTTCCCTTCTGGAGACCTCAACTTCTCTCtgtgttagttggctgaggctgccatcacacaatatcacaatcttggtgactcaaaaaacagaaacttatttcctcacagttccgtgggctggaagtccaagatcaaagtgttgacaagcttggtttcttctgagg-----cctcagtgtgccaacaaggacccttgctatctcttcccactccgaatttcctgttcccgtaaggacgccagtcagattagattaggcccaccctaagggcctccttttaatttaatcacctctttaaaggtcctatctccaagtacagtcaccttttgaggtactgagcattaaggcttcaacacacgagttttgggccaggagtggtggctcacacctataaccccaacgcattgggaggctgagatgggaggatcccttgagcccaggaggtcgaggct-cagtgagctatgatcgtgtcactgcactccagcctgggcaacagagcaagactctgtct-----ca-------------------aaaca---aaacaaaa
  427. i panTro2.chr22 I 509 C 0
  428. s hg18.chr22 16102504 1081 + 49691432 CTGTTGTGCCTCGCCTGTCTTTCTCCCAGACGTTGTTGGAATTCCCACCTCCACATGCCCACCCCTAGATCCAGCTTCCTGGCTGGTGCCTGGGAGCGTGGCTTCTGCCCGCCCACTGGCCTGGCCTCAGAGGTCTGCCCTACCC---------------TGACGCTAGCAACTGCTCAGACTAGGCAGCCCGTGGATGGAACTGCCTGATGCTGTCCTCCCATGCAAAGAGAATGGAGCCCTGGAAGAAGGCTCTCTGGAGTCACCCCAACAAAACACCATGTGAGCCTTGCACTTCCTTGCAGTGTGGCAGGGCACATCTCACATGGGTGCTTGCAGGGATGTGGAGGTGGGAATGTGAGAGGGTGGGGAGGGGTGTGGAGTGGCCAGGATCCAGGGGAGAATG-CCCCACGGAGACAGAGACCCTTGGCTTGGTATGAAGGGAG-CACAAGAAGGAGTAAATCCAGGACACGGCTAGACTGTGGCACCCCTGTGGGAGTGCCCGCACTTAGGGACACATGACCTTGGGGGAATTCTGGACAGCTTAGAGGCTTACTCCATGACAGAAGATACTTCCCTTCTGGAGACCTCAACTTCTCTCtgtgttagttggctgaggctgccatcacacaatatcacaatcttggtgactcaaaaaacagaaacttatttcctcacagttccctgggctggaagtccaagatcaaagtgttgacaagcttggtttcttctgagg-----cctcagtgtgccaacaaggacccttgctgtctcttcccactccgaatttcctgttcctataaggacgccagtcagattagattaggcccaccctaagggcctccttttaatttaatcacctctttaaaggtcctatctccaagtacagtcaccttttgaggtactgagcattaaggcttcaacacacgagttttgggccaggagtggtggctcacaactataaccccaacacattgggaggctgagatgggaggatcccttgagcccaggaggtcgaggct-cagtgagctatgatcgtgtcactgcactccagcctgggcaacagagcaagactctgtctcaaaaca-------------------aaaca---aaacaaaa
  429. i hg18.chr22 I 509 C 0
  430. s calJac1.Contig13114 9064 1050 + 38599 ----------TCACCTGTCTTTCTCCCAGGCATTGTCGGCATTCCCACCTCCACATGCCCAGGTTTGTATTCAGCTTCCTGGCTGGTGCCTGAGAGCACAGCTCCTGCCTGCCCACTGGCCTGGCCTCAGAGATctgccctgccctgccctgccctgccGTGACGCAAGCAACTGCTCTAACTAGGCAGCCTGTGAACTGGACCGCCTGCTGCTGTCCCCCTGCGCAAAGAGAATGGAGCCCGGGGAGAAGGCTCTCTGGCGTCACCCCAACACAGTACTGCGTGAGGCTTGAGCTTCTTTGCAGTGTGGCAGGGCATATCTCATGTGGATGTTTGCAGGGATGTGGAGGGGGGAGTGTGAGAAGGTGGGGAGGGGTGTGGAGAGGCCAGGATCCAGGAGAGAATG-CCCTACAGACACAGAGACCCTTGGCTTGGCATGCAGGGAG-CAT---AAGGAGTAAACCCAGGAC--------GCTGTGGCAGCCCTTTGGGAGCACCCACACATAGGGACACACGGCCTT-GGGGATTTCCAGACAGCTCAGGGGCTTACT-CGTGGTAGAAGAGGCTTCTTTCCTGGAGGCCCCAACTTCTCTC----ttagtcggctgaagctgccatcacaaaatatcgaaatctgggtgactcagacaacgaaaatgt----------agttccagagtct-gaagtgcaaggtcaacgtgctgacaagcttggtttcttctgaggcttctcctctgtgtgccagcaagcacccttgcggcctcttccaactccgagtttcctgttcccgcaaggacgtcagtcacgttggattaggcctaacctaacg----------------atcacctgtttagaggttctgtctccaaggacaggcacctcgtgaggtcctgaaggcta-gccttcaacacatcagtttCCGgccaggcgcggtggctcatgcctataatcccaacacatccgga-actgaggtgggaagatcccttgagcccgggaggtcgaggctgcagtgagctatgttggtgccactgcgttccagcctgggccacacagcaagaccgtgtctcaaaaaa---------------aaaaaaaaa---aaaaaaaa
  431. i calJac1.Contig13114 I 831 I 141
  432. a score=204630.0
  433. s ponAbe2.chr22 13811748 273 + 46535552 caaaaAAACC---CCATGAATTTTGGGGGAGACACCACTCAGCCAGCAACACTGCAAGTAAGGAATACTAATACCAACCTATTTCACTAGTTGAAGGAAGTGATTTCAGAAGAGAGGGCAGAGATTTGTCATAATCAGCAGACCAAGTTTAGATGTAAGTACCTCCTGCAAAATTTCAGAAAGATCTGTCTTGCCCTTTGTTAACAG-AAAAAAAtcactccttcatgcaagcatttattgagtgcctctctctgccaag----------------------------------ttggctcaccgcaatgc
  434. s calJac1.Contig13114 10269 308 + 38599 CAAAAAAAACAAAACATGAGTTTTGGGAGAGACACCATTCAGCTAGCAACACTGAAAGTAAGGAATACGAATACCAATCTATTTCACTCGTGGAAGGAAGTGACTTCAAAAGAGAGGGCAGAGATTTGTCACAATCAGCAGACCAAGTTCAGATTTAAGTACCTCCTCCAAAGTTTCAGAAAGGTCTGTCTCGTCCTTGGTTAATAG-AAAAAAATGGCTCCTTCAGGCGAGCATTCATTGAGTGC--CTCTGTGCCACGCAGCGCGAAAGTAAACCTGTAAGAGCGGAGGCCCTTGGCGCACCGCAGTGC
  435. i calJac1.Contig13114 I 141 C 0
  436. s rheMac2.chr10 61902101 306 + 94855758 taaaaaaa-----ccatgaattttgggggagacaccattcagccagcaacCCTGTAAGTAAGGAATACTAATACCAACCTATTTCACTAGTTGAAGGAAGTGATTTCAGAAGAGAGGGCAGAGATTTGACACAATCAGCAGACCAAGTTTAGATTTAAGTACCGCTTGCAAAATTTCAGAAAGGTCTGTTTTGTCCTTTGTTAATAGAAAAAAAAtcactccttcatgcaagcatttattgagtgcctctctgtgccaagcattgtgAAAGTAAAGCTATAAAAGCTGAGAACTCTGGCTCACCACAATGC
  437. i rheMac2.chr10 C 0 C 0
  438. s panTro2.chr22 16114587 273 + 50165558 caaaacaaaC---CCATGAATTTTGGGGGAGACACCACTCAGCCAGCAACACTGTAAGTATGGAATACTAACACCAACCTATTTCACTAGTTGAGGGAAGTGATTTCAGAAGAGAGGGCTGAGATTTGTCATAATCAGCAGACCAAGTTTAGATGTAAGTATCTCCTGCAAAATTTCAGAAAGATCTGTCTTGTCCTTTGTCAACAG-AAAAAAAtcactccttcatgcaagcatttattgagtgcctctctgtgccaag----------------------------------ttggctcactgcaatgc
  439. i panTro2.chr22 C 0 C 0
  440. s hg18.chr22 16103585 272 + 49691432 caaaacaaaC---CCATGAATTTTGGGGGAGACACCACTCAGCCAGCAACACTGTAAGTATGGAATACTAATACCAACCTATTTCACTAGTTGAGGGAAGTGATTTCAGAAGAGGGGGCTGAGATTTGTCATAATCAGCAGACCAAGTTTAGATGTAAGTACCTCCTGCAAAATTTCAGAAAGATCTGTCTTGTCCTTTGTCAACAG--AAAAAAtcactccttcatgcaagcatttattgagtgcctctctgtgccaag----------------------------------ttggctcactgcaatgc
  441. i hg18.chr22 C 0 C 0
  442. a score=212823.0
  443. s ponAbe2.chr22 13812021 233 + 46535552 agatattatctgatctaatcAAGGGGTATTTATTGAGTGGTGTTG--GAGGTTAAAGGAGTATCAAACAAACTTGACCCCAGTCCCGAAGGAGCTTGTAATTCTTGCTGGAAAGGCAAGACCAACTCACAGGAAACAACAGGAACAGCAGCAGGTGATATATAACTGAGTTCTAAATTGTGTGGTGCAAACTTCAATTGCTGCTGGAATTGGGAATGAGGAAGATCAATGAGGGA
  444. s hg18.chr22 16103857 233 + 49691432 agatattatctgatctaatcAAGGGGTATTTATTGAGTGGCGTTG--GAGGTTAAAGGAGTATCAAACAAACTTGATCCCAGTCCTGAAGGAGCTTGTAATTCTTGCTGGAAAGGCAAGACCAACTCATAGGAAACAACAGGAACAGCAGCAGGTGATATACAACTGAGTTCTAAATTGTGTGGTGCAGACTTCAATTGCTGCTGGAATTGGGAATGAGGAAGATCAATGAGGGA
  445. i hg18.chr22 C 0 C 0
  446. s panTro2.chr22 16114860 233 + 50165558 aaatattatctgatctaatcAAGGGGTATTTATTGAGTGGCGTTG--GAGGCTAAAGGAGTATCAAACAAACTTGATCCCAGTCCTGAAGGAGCTTGTAATTCTTGCTGGAAAGGCAAGACCAACTCATAGGAAACAACAGGAACAGCAGCAGGTGATATACAACTGAGTTCTAAATTGTGTGGTGCAGACTTCAATTGCTGCTGGAATTGGGAATGAGGAAGATCAATGAGGGA
  447. i panTro2.chr22 C 0 C 0
  448. s rheMac2.chr10 61902407 231 + 94855758 AGATATTGTCTGATCTAATCAAGAGG----TATTGAGTGGTGCTGGAGAGGTTAAAGGAGTATCAGACAAACTTGATCCCAGTCCCAAAGGAGCTTGTAATTCTTGCCGGAAAGGCAAGACCAACTCGTAGGAAACAACAGGAACAACAGCAGGTGATATATAACTGAGTTCTAAATTGCGTGGTGCAGACTTCAATTGCTGCTGGAATTGGGAATGAGGAAGATCAATGAGGGA
  449. i rheMac2.chr10 C 0 C 0
  450. s calJac1.Contig13114 10577 230 + 38599 AGATACCGTCTGATCTGATCAAGAGGTATTTATTGAGTGGTGTTG--GAGGTTAAAGGAGTATCAGACAAACTCGATCCCAGTCCCGAAGGAGCTTGTAAATCTTGCTGGGAAGGCAAGAGCCACTGGTATG--ACACCAGGAACAACAGCAGGTGATCTATAACTGAGTTCTACATTGTGTGGCG-GGACTTCAATTGCTGCTGGAATTGGGAATGAGAAAGATCAATGAGGGA
  451. i calJac1.Contig13114 C 0 C 0
  452. a score=81745.0
  453. s ponAbe2.chr22 13812254 101 + 46535552 GAGGGTCAGCACCAGCTAAATCACTTAGACTGATGCATTCATTAGCCTGAGCCATTGTTCACGCCGCAGACTTTCTGTTCAAAATGGTAAAAGCCAGTCCG
  454. s hg18.chr22 16104090 101 + 49691432 GCGGGTCAGCACCAGCTAAATCACTTAGACTGAGGCATTCATCAGCCTGAGCCATTGTTCACGCTGCAGACTTTCTGTTCAAAATGGTAAAAGCCAGTCCG
  455. i hg18.chr22 C 0 C 0
  456. s panTro2.chr22 16115093 101 + 50165558 GCGGGTCAGCACCAGCTAAATCACTTAGACTGAAGCATTCATCAGCCTGAGCCATTGTTCACGCTGCAGACTTTCTGTTCAAAATGGTAAAAGCCAGTCCG
  457. i panTro2.chr22 C 0 C 0
  458. s rheMac2.chr10 61902638 101 + 94855758 GCGGGTCGGCACCAGGTAAATCACTTCGACTGAAGCATTCATGAGCCTGAGCCATTGTTCACGCTGCAGACTTTCTGTTCAAAATGGTAGAAGCCAGTCCG
  459. i rheMac2.chr10 C 0 C 0
  460. s calJac1.Contig13114 10807 101 + 38599 GCGGGCTGGCACCAGCTAAATCACTCAGACCGGAGCGTTTGTTAGCACGAGCCATTGTTCACGTTGCAGACTTTCTGCTCCAAATGGTAAAAGCCAGTCTG
  461. i calJac1.Contig13114 C 0 I 322
  462. a score=598795.0
  463. s ponAbe2.chr22 13812669 795 + 46535552 CCAAAAGCCTCAATCACAGGGATGACTCAAGACCTCGAGTTTCATTTCATGTTTCTAATGCCATGAGACAACCGTGGGCCTCGCCCTGCTCAGCAGAGTCCTACCCCCAACTTTCTCCACTCAGCTTCCCCTACTCAGGGTACATGGAAAAGGGGTTCCCCACCACAATTCTATGGCCACACCCCAGGGGGCAAGTTCAACCAACAGGCCAGGCGAATGAGCCCCACCTGTGCCCCATTCCCACCTGATCGGACCCCGCAGCCCTTTGGGAGCACTCAGATACTGGTGAGAATGCCCCTGTTTGCTTGAGGGGCCCGTGGCTACTTGTTGACCGCACAGGGCATCTGTTGAGAAGATGCACGCAGGGGAGGGAAGGAGAGAAAGACAAGAGGAGCCTATGCGATTGGCGAGAAGACATAGAGGACAGAGAACATGGGGAACTGAGGACTAGAACGGATTTCTAGCCTGACCCATTCTGGG----GGACTCCTTTTAGACCAGGGGTCTGCGTTGGCCCGTGAGTGCAGCTGAGCTCTCTCCACCTCTCTTCAGCCTCTTCTGCCACTCTGAAAGGCCCCAGGTTTTATTTCCGGTTCACATTGCTGCACCCATAACCCAGGGAATGTGGCAGCCCCTGCTGGGATTTCACACGTGTGCAGAGGGTGCCTCTGGGTGGGGCTTCATTCCTCTATGGGTCACGAGTCCCTGGGCAGTGACCACGCCCTAGTGACAGCCAGAGTGCCTTTCATTCCAAGTGCTATATTAGCCAGTATCTTAAAAACCTGGTCTGGAGCCGGG
  464. s hg18.chr22 16104501 789 + 49691432 CCAAAAGCCTCAGTCACAGGGATGACTCAGGACCTTGAGTTTCATTTCATGTTTCTAATGTCATGAGACAACCGTGGGCCTCGCCCTGCTCAGCAGAGTCCTACCCCCCACTTTCTCCACACAGCTTCCCCTACTCAGGGTACATGAAAAAGGGGTTCCCCACCACAACTCTATGGCCACACCCCAGGGGGCAAGTTCAACCAACAGGCCAGGCGAATGAGCCCCATCTGTGCCCCATTCCCACCTGATCGGACCCCACAGCCCTTTGGGAGCACTCAGATACTGGTGAGAATGCCCCTGTTTGCTTGGGGGGCCCGTGGCTACTTATTGACGGCACAGGGCATCTGTTGAGAAGATGCAGGCAGGGGAGGGAAGGAGAGAAAGACAAGAGGAGCCTATGCAATTGGCGAG-AGACACAGAGGACAGAGAACATGGGGAACTGAGGACTAGAACGGATTTCTGGCCTGACCCGTTCTGGG----GGACTCCTTTTAGACCAGGGGTCTGTGTTGGCCCGTGAGTGCAGCTGGGCTCTCTCCACCTCTTTTCAGCCTCCTCTGCCACTCTGAAAGGCCCCAGGTTTTATTCCCGGTTCACATTGCCGCACCCATAACCCAGGGAATGTGGCAGCCCCTGCTGGGGTTTCACAGGCGTGCAGAGGGTGCCTCTGGGTAGGGCTTCATTCCTCTATGGG-CAGGAGTCCCTGGGCACTGACCACGCCCTAGTGACAGCCAGAGTGCC-TTCATTCCAAGTGCTATATTAG-CAGTATCTTAAAAACCT-GTCT-Gagccggg
  465. i hg18.chr22 C 0 I 1616
  466. s panTro2.chr22 16115505 793 + 50165558 CCAAAAGCCTCAGTCACAGGGATGACTCAAGACCTCGAGTTTCATTTCATGTTTCTAATGTCATGAGACAACCGTGGGCCTCGCCCTGCTCAGCAGAGTCCTACCCCCCACTTTCTCCACACAGCTTCCCCTACTCAGGGTACATGAAAAAGGGGTTCCCCACCACAACTCTATGGCCACACCCCAGGGGGCAAGTTCAACCAACAGGCCAGGCGAATGAGCCCCATCTGTGCCCCATTCCCACCTTATCGGACCCCACAGCCCTTTGGGAGCACTCAGATACTGGTGAGAATGCCCCTGTTTGCTTGGGGGGCCCGTGGCTACTTATTGACGGCACAGGGCATCTGTTGAGAAGATGCAGGCAGGGGAGGGAAGGAGAGAAAGACAAGAGGAGCCTATGCAATTGGCGAG-AGACACAGAGGACAGAGAACATGGGGAACTGAGGACTAGAACGGATTTCTGGCCTGACCCATTCTGGGGGACGGACTCCTTGTAGACCAGGGGTCTGTGTTGGCCTGTGAGTGCAGCTGGGCTCTCTCCACCTCTTTTCAGCCTCCTCTGCCACTCTGAAAGGCCCCAGGTTTTATTCCCGGTTCACATTGCCGCACCCATAACCCAGGGAATGTGGCAGCCCCTGCTGGGGTTTCACAGGTGTGCAGAGGGTGCCTCTGGGTAGGGCTTCATTCTTCTATGGG-CAGGAGTCCCTGGGCAGTGACCACGCCCTAGTGACAGCCAGAGTGCC-TTCATTCCAAGTGCTATATTAG-CAGTATCTTAAAAACCT-GTCT-Gagccggg
  467. i panTro2.chr22 C 0 I 2380
  468. s rheMac2.chr10 61903042 771 + 94855758 CCAAAAGCCTCAATCACAGGGATGACTCAAGACCTCGAGTTTCATTTCATGTTTCTAATGTCATGAGACAACCGTGGGCCTTGCCCTGCTCAGCAGAGTCCTACCCCCCACTTTCTCCATTCAGCTTCCCCTACTCAGGGTACATGAAAAACG-----------------CTATGGTCACACCTCAGGGGGCAAGTTCAACCAACGGGCCAGGCAAATGAGCCCCATCTGTGCCCCATTCCCACCTGATCGGACCCCGCACCCCTTTGGGGGTGCTCAGATACTGGGCAGAATGCCCCTGTTTGCTTGGGGGGCCCATGGCTACTTGTTGACTGCACAGGGCATCTGTTGAGAAGATGCAGGCA-AGGAGGGAAGGAAAGAAAGACAAGAGGAGCCTGTGGAATTGGCGAG-AGACACAGAGGACAGAGAACATGGGGAACTGAGGACTAGAACGGATTTCTGGCCTGACCCACTCTGGG----GGATCCCATTTAGACCAGGGGTCTGCATTGGCCCGTGAGTGCAGCTGGGCTGTCTCCACCTCTCTTCAGCCTCCTCTGCCACTCTGAAAGGCCCCAGGTTTTATTCTCCGTTCACATTGCTGCACCCATAACCCGTGGAATGTGGCAGCTCCTGCTGGGGTTTCACAGGTGTGCAAAGGGAGCCTCTGGGTGGGGCTTCATTCCTCTATGGG-AGGGAGTCCCTGGGCAGTGACCACGCCCTAGTGACAGCCAGAGTGCC-TTCGTTCCAAGTGCTTTATTAG-CAGTATCTTAAAAACCT-ATCT-Gagccagg
  469. i rheMac2.chr10 C 0 I 1889
  470. s calJac1.Contig13114 11230 760 + 38599 caaagtgctgggattacaggcttgagccactgcgcccggccTCATTTCATGTTTCTAACCTCATGAGACAGCCATGGGCCTCATCCTGCTCAGC--AGTCCTACCCTTGACTTTCTCCACTCAGCTTCCCCTGCTGAGGCTACATGAAACAGGGGTTCCCCACCACAACTCTACATCCACACCCCAGGGGGCAAGTTCAACCAGCAGTCCAGGCCAGTGAGCCACACCTGCACCCCATTCCCACCTGACTGGACCCAGCAGCCCTGCAGGA-CACTCAGTTACGAGTCAGAATGCCCCTGTTTGCTTGGGGGGCCCGTGGCTACTTGTTGACTGCACAGGGCACCTGTTGAGAAGATGCAGGAAGTGGGGGGC-----AGAAAGACAGGAGGAGCCCATGGAATTGGCGAG-AGACACAGAGGACAGAGAACATGGGGAACAGAGAACTAGAACGGATTTCTGGCCTGACCCATTC-GGG----GCACCCCTTTTAGACCGAGGGTCTGCACTGGTCCATGAGTGCAGCTGGGCTCCCTCTACCGCTGTTCAGCCTCCTCTGCCATGCTGAAAGGCCCCAGATTTTAGTTCCTGTTCAGGTTGCTGCACCCATAACCTGGGGAATGTGGCA---CCCGCCAGGGTTTCACAGATGTGCAGAGCGTGGCTCTGGGTGGGGCTCCGTTCCTCCATGGG---------------CAGTGACCACGCCCTAGAGACGGCCAGAGTGCC-TTCATTCCAAGTGCTATATTGG-GAGTATCTTAAAAACCT-GTCT-GAAAC---
  471. i calJac1.Contig13114 I 322 I 1142
  472. a score=813164.0
  473. s ponAbe2.chr22 13832752 1104 + 46535552 gtcaggagttcaagaccaccctggccaacatggtgaaacccagtctctactaacaatacaaaaattagccagacatggtagcacgcctctatagtcccaactactcaggaggccgaggcaggagaattgcttgaacccgggagatggaggttgcagtgagccaagatcccgccactgcactccagcctgggtgccagagcgagactc--tttcaaaaaat-------------aaaataaaataaaataaCagagagaaagacagaggccaaataggcaaatatggtaaaaagtttatctttgttgaatctaggtggtcaattatgtgcatattctttccaacttcctctatgtttgaaatctgccataataataagtttgaaaactaGATGGAGATGTAAAGACAGGGCCTCTCAGCTGATGGTGTTTGCCTACCTCGTTCCCTCTCTTGGTCTTCTGCCGAGATATTGGCCCCGCTGCTATTCCAGCCTGGATCCCCTGAGGCTTGAACGAGCTTAGGGACTGGCTGGGCCTCTAGAATCAGACCAGGAAACACTGGATCTGGGGCTGGACAACTAAGGCAGGATTCTTAATTGGTATATTAGAGATGAAGACAAACATGTCTCCCATAAGGGCAGCCTTTGGGAGACACAGCCCCTACACAGAAAAGCAAGAGTCCCTCCTGGGCATTTCTCGCAGTGTGAAGAGGAACACA----------------------------------------------------------------------------------------GTAAAAGGATTAG-A-GCAAGGATGGACTCAGAATTTAGAGCCATTTACAAGGGTACAAAATCATTCCTGGCTACAAAGGGTAAAAATGAGAAAAGAGGGTAAAATGAGAAATGAATgtggtgactcattcctgtaatcccagcactttggaagaccaaggcgggtggatcacttgaggtcaggagttcaagaccagcctggccaaca-------------tggtgaaacctccgtctctactaaaaatacaaaaattagctgggcatggtggtgcgcgcctataatcccagctgctagggaggctgaagcaggagaatcgcttgaacaaaggaggcagaggttgcaatgagccgagattgcaccactgcactccagcctgggtgac-agagtgagact--gtctc---caaaaaaaaaaaaaaa
  474. s panTro2.chr22 16129884 1103 + 50165558 gtcaggagttcaagaccaccctggccaacctggtgaaacccagtctctactaacaattcaaaaattagccggacatggtagcacgcctctatagtcccaactactcaggaggctgaggcaggagaattgcttgaacccgggagatggaggttgcagtgagccaaaatcccgccactgcactccagcctggatgccagagcgagactc--tttcaaaaaat-------------aaaataaaataaaataaC----AGAAAGAGAGAGGCCAAATAGGCAAATATTGTAAAAAGTTTATCTTTGTTGAATCTAGGTGGTCAATTATGTGCATATTCTTTCTAACTTTCTCTATGTTTGAAATTTGCCGTAATAATAAGTTTGAAAACTAGATGGAGATGTAAAGACAGGGCCTCTCAGCTGATGGTGTTTGCCTACCTGGTTCCCTCTCTTGGTCTTCTGCCCAGATATTGGCCCCACTGCTATTCCAGCCTGGATCCCCTGAGGCTTGAATGAGTTTAGGGACTTGCTGGGCCCCTAGAATCAGACCAGGAAACACTGGATCTGGGGCTGGACAACTAAGGCAGGATTCTTAATTGGTATATTAGAGATGAAGACAAACATGTCTCCCATAAGGGCAGCCTTTGGGAGACACAGCCCCTACACAGAAAAGCGAGAGTCCCTCCTGGGCATTTCTCCCAGTGTGAAGAGGAACACA----------------------------------------------------------------------------------------GTAAAAGGATTAGCA-GCAAGGATGGACCCAGAATTTAGAGCCATTTACAAGGGTACAAAATCATTCCTGGCTACAAAGGGTAAAAATGAGAAAAGAGGGTAAAATGAGAAATGAAcgcggtggctcacgcctgtaatcccagcactttggaagaccaaggcgggcggatctcttgaggtcaggagttcaagaccagcctggccaaca-------------tggtgaaacccccgtctctactaaaaatacaaaaattagctggacatggtggtacgcgcctataatcccagctactagggaggctgaagcaggaaaatcacttgaacaaaggaggcagaggttgcaataagccgagattgcgccaccgcattccagcctgggtgac-agagtgagact--gtctc-aaaaaaaaaaaaaaaaaa
  475. i panTro2.chr22 C 0 C 0
  476. s hg18.chr22 16113458 1105 + 49691432 gtcaggagttcaagaccaccctggccaacctggtgaaacccagtctctactaacaattcaaaaattagccggacatggtagcacgcctctatagtcccaactactcaggaggctgaggcaggagaattgcttgaacccgggagatggaggttgcagtgagccaaaatcccgccactgcactccagcctggatgccagagcgagactc--tttcaaaaaat-------------aaaataaaataaaataaCAGAGAGAAAGAGAGAGGCCAAATAGGCAAATATTGTAAAAAGTTTATCTTTGTTGAATCTAGGTGGTCAATTATGTGCATATTCTTTCTAACTTTCTCTATGTTTGAAATTTGCCGTAATAATAAGTTTGAAAACTAGATGGAGATGTAAAGACAGGGCCTCTCAGCTGATGGTGTTTGCCTACCTGGTTCCCTCTCTTGGTCTTCTGCCCAGATATTGGCCCCACTGCTATTCCAGCCTGGATCCCCTGAGGCTTGAATGAGTTTAGGGACTTGCTGGGCCCCTAGAATCAGACCAGGAAACACTCGATCTGGGGCTGGACAACTAAGGCAGGATTCTTAATTGGTATATTAGAGATGAAGACAAACATGTCTCCCATAAGGGCAGCCTTTGGGAGACACAGCCCCTACACAGAAAAGCGAGAGTCCCTCCTGGGCATTTCTCCCAGTGTGAAGAGGAACACA----------------------------------------------------------------------------------------GTAAAAGGATTAGCA-GCAAGGATGGACCCAGAATTTAGAGCCATTTACAAGGGTACAAAATCATTCCTGGCTACAAAGGGTAAAAATGAGAAAAGAGGGTAAAATGAGAAATGAAcacggtggctcacgcctgtaatcccaacactttggaagaccaaggcgggcggatctcttgaggtcaggagttcaagaccagcctggccaaca-------------tggtgaaacccctgtctctactaaaaatacaaaaattagctgggcgtggtggcacgcgcctataatcccagctaccagggaggctgaagcaggaaaatcacttgaacaaaggaggcagaggttgcaataagccgagattgtgccactgcactccagcctgggtgac-agagtgagact--gtctc---aaaaaaaaaaaaaaaa
  477. i hg18.chr22 C 0 C 0
  478. s rheMac2.chr10 61913078 1104 + 94855758 gtcaggagttcaagaccaccctggccaacatggtgaagcccagtctctattaacaatacaaaaattagccagacatggtggcacgcctctatagtcccagctactcaggaggctgaggcaggagaattgcttgaacctgggaggtggc-gttgcagtgagccaagttcctgctactgcactccagcctgggtgccagagtgagactc--tgtgtcaa----------------aaagtaaaataaaataacagagagaaaGACAGAAGCCAAATAGGAAAATACGCTAAAAAGTTTATCTTTGTTGAATCTAGGTGGTCAATGATGTGCATATTCTTTCTAACTTTCTCTATGTTTGAAATTTTCCATAATAATAAGTTTGAAAACTAGATGGAGATGTAAAGACAGGGCCTCTCAGCTGATGGTGTTTGCCCACTTGGTTCCCTCTCTTGGTCTTCTGCCCAGATATTGGCCCCGCTGCTATTCCAGCCTGGATCCCCTGAGGCTTGAATGAGCTTAGGGACTGGCTCGGCACCTAGAATCGCACCAGGAAACACTGGATCTGGGGCTGGACAACTAAGGCAGGATTCTTAATTGGTATATTAGAGATGAAGACAAACATCTCTCCCATAAGGGCAGCCTTTGGGAGACACAGCCCCTACACAGAAAAGCAAGAGTCCCTCCTTGGCATTTCTCCCAGTGTGAAGAGGAACACA----------------------------------------------------------------------------------------GTAAAAGGATTAACA-GCAAGCATGGACCCAGAATTTAGAGCCATTTACAAGGGTACAAAATCATTCCTGGCTACAAAGGGTAAAAATGAGAAAAAAGGGTAAAATGAGAAAATAgcgtggtggctcacacctgtgatcccagcactttgggaggccaaggtgggtggatcacttgaggccaggagttcaagaccagcctggccaaca-------------tagtgaaacc-ccgtctctactaaaaatacaaaatttagctgggtgtggtggcgcacgcctataatcccagctactagggaggctgaagcaggagaatcgcttgaacaaaggaggcagaggttgcagtgagccgagattgtaccactgcattccagcctggg-gac-acagtgagactccatctcaaaaaaaaaaaaaaaaaaa
  479. i rheMac2.chr10 C 0 C 0
  480. s calJac1.Contig13114 13132 1175 + 38599 gtcaggagttcgagaccagcctggccaacatggcaaaaccccgtctctactaacaatacaaaaattagccggacgtggtggcatgtccctacagtcccaactactcaggaagctgaggcaggaaaatcgcttgaaccca---------------cttgagccaagatccggcctctgcactccagccagggtgacagagagagactctatatcaaaaaactaacgtaaaataaaaaGTAAGATAAAATAAC------AGAGAGAGAGGCCAAAT-GGCAAATA-GGGAAAAAGTCAATCTTTGTTGAAACTAGGTGACCAATTACGTACACATTCTTTTTAACTTTCTGCATGTTTAAAACCTGCCACAATCATAAGTTTGAAAAGTGGATGAAGATGTAAACCCAGGGCCTCTCGGCTGATGGCGTTTGCC-ACCCGGCTCCCTCTCTCAGTCTTCTGCCCAGCAATTGGCTCCACAGCTATTCCAGCCTGGGTCTCCTGAGGCTTGAATGAGCTGAGGGACTGGCTGAGCCCCTAGAATCAGACCAGGAAACACTGGATCTGGGGCTAGACAACTAAGGCAGGATTCTTAATGGGTATTTTGGAGATGAGGACAAACATCTCTCCCCTAAGGGCAGTCTTTGGGAGACA---GCTCCACACAGAAAGGCAAGAGTCCCTCCTGGGCGTTTCTCCCAGTGTGAAGGGGAAAGCAGGCAAGGGTCCCTCCTGGGCATTTCTCCCAGTGTGAAGGGTGTGAAGAGGAAAGCAGGCAAGGGTCCCTCCTGGGCGTTTCTCCCAGTGTGAAGAGGAAAGCAGGCAAGGATGGACCCAGTAGCAAGAGCCACTTACAAGGGTACAGAATCATTCCCGGCTACAATGATTAAaaaaatgagaaaaaggc----tggg--------gtggtggcacacacctgtaatcccagcattttgggaagccaaggcaggcggatcacctgaggtcgg--------agccagcctggccactatcaattacttttttagtagaaacctcatctctactaaaaatacaaaa-ttgacccggcgttgtactgggcacctataatcccagctactcggaaggctgaggcaggagaatcacttgaacctgggaggcggaggttgagatgagccaagattg--ccattgcactccagcctgggcaacaagagcaaaactccatctc---aaaaaaaaaaaaaaaa
  481. i calJac1.Contig13114 I 1142 I 163
  482. a score=19482.0
  483. s ponAbe2.chr22 13833856 27 + 46535552 aaaaagagagagaaAGAAAGATAAAAG
  484. s panTro2.chr22 16130987 27 + 50165558 agagagagagaGAAAGAGAGATAAAAG
  485. i panTro2.chr22 C 0 C 0
  486. s hg18.chr22 16114563 27 + 49691432 agagagagagagaaAGAGAGATAAAAG
  487. i hg18.chr22 C 0 C 0
  488. s rheMac2.chr10 61914182 27 + 94855758 agaaagaaagaGAGAGAGAGATAAAAG
  489. i rheMac2.chr10 C 0 C 0
  490. s calJac1.Contig13114 14470 27 + 38599 gaaaaaagagagaaaGAGAGAAGAgag
  491. i calJac1.Contig13114 I 163 I 146
  492. a score=204846.0
  493. s ponAbe2.chr22 13833883 356 + 46535552 AATAAAAGTTTAggccaggcgcagtgtctcatgcctgtaatcctagcactttgggaggccaaggcaggcagatcacg--aggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaa-aaaaaaaaaaaaaaattagctgggcatggtggcaggcgcctatagtcccaggtactcgggaggctgaggcaggagaatggtgtgaacccgggaggcagagcttgcagtgaaccgagatcacgtcactgcactccagcctgggggacacc-acagcgagactccgtctc-aaaaaaaaaaaaaaa-aaaaGGTTagccgggtgtg---gtggctcatgtct
  494. s panTro2.chr22 16131014 356 + 50165558 AATAAAAGTTTAggacgggcgcagtggctcacgcctgtaatactagcactttgggaggccaaggcaggcagatcacc--aggtcaggagatcgagaccatcctggctaacatggtgaaaccccatctttactaaaaatacaaaaaaaaaaaaaaaaaaaattagctgggcgtggtggcaggcgcctgtagtcccagctactcgggaggctgagacaggagaatggtgtgaacctgggaggcagagcttgcagtgagccgagatcgcgtcactgcactcaagcctggagga---c-agagcgagactccgtctcaaaaaaaaaaaaagaataaaaGGTTagctgggtgtg---gtggctcacgtct
  495. i panTro2.chr22 C 0 I 62
  496. s hg18.chr22 16114590 348 + 49691432 AATAAAAGTTTAggacgggcgcagtggttcacgcctgtaatactagcactttgggaggccaaggcaggcagatcacc--aggtcaggagatcgagaccatcctggctaacatggtaaaaccccatctttactaaaaat-------aaaaaataaaaaaaattagctgggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggtgtgaacctgggaggcagagcttgcagtgagctgagatcgcgtcactgcactcaagcctggagaa---c-agagcgagactccgtctc-aaaaaaaaaaaagaataaaaGGTTagccgggtgtg---gtggttcacgtct
  497. i hg18.chr22 C 0 I 62
  498. s rheMac2.chr10 61914209 344 + 94855758 AATAAAAGGTTa-gccgggagtggtggctcacgtctgtaatcccagcactttgggaggccgatgcgggctgatcacctgaggtccagagttccagaccaccctgaccaacatggcaaaaccccgtctctactaaaaat---------------acaaaaattagccaggcatagtggtgggcgcctgtgatcccaattactcaggaggctgaggcaggagcaccacttgaacccgggagtcggaggttgcagtaagccaagatcgtgacattgcactccagtctgggtga---caagagcaaaactccatctc-aagaaaaaaaaaatc-agaagataaaaaGGTTATAAATGAggccaatgttc
  499. i rheMac2.chr10 C 0 I 104
  500. s calJac1.Contig13114 14643 311 + 38599 AACAGAAGTAGAggctgggcgtggttgctcatgcctgtaatcccagcactttaggacgccaaggcgggtggatcacg--aggtcaacagatcgagaccatcctggtcaacaaggtgaaatcccgtctctattaaaaat---------------acaaaaattagctgggcatggtggtgcgcacctgtagtcccagctactccggaggctgaggcaggagaattgcttgaacccaggcaatggaggttgcggtgagctgagatcgtgccattgcactccagtctgggtaa---caacagcaaaactccatctc-aaaaaataaataaat-aaa--------------------------------
  501. i calJac1.Contig13114 I 146 C 0
  502. a score=118217.0
  503. s ponAbe2.chr22 13834301 212 + 46535552 agcctgaccaacatggcaaaacgccatctctactaaaaatacaaaaattagccaggcatggtggtgggcgcctgtaatcccaattactcgggaggctgaggc--aggagaatcacttgaacccgggagtcagaggttgcagtgagctaagatcgtgacattgcactccagcatgggtaacggagtgagaccctgtccccaaaaaaagaaaaaaa
  504. s hg18.chr22 16115000 212 + 49691432 agcctgaccaacgtggcaaaacgccatctctactaaaaatacaaaaattagccaggcatggtggtgggcgcctgtaatcccaattacttgggaggctgaggc--aggagaatcgcttgaacctgggagtcggaggttgcagtgagctaagatcgtgacattgcactccagcatgggtaacggagtgagaccctgttccaaaaaaaaccaaaaaa
  505. i hg18.chr22 I 62 I 1078
  506. s panTro2.chr22 16131432 212 + 50165558 agcctgaccaacgtggcaaaatgccatctctactaaaaatacaaaaattagccaggcatggtggtgggcgcctgtaatcccaattacttgggaggctgaggc--aggagaatcgcttgaacctgggagtcggaggttgcagtgagctaagatcgtgacattgcaccccagcatgggtaacggagtgagaccctgttccaaaaaaaaccaaaaaa
  507. i panTro2.chr22 I 62 I 1073
  508. s rheMac2.chr10 61914657 213 + 94855758 aggctgggcaacatagtgagaccccatctctacaaaaaata-aaaaattagctgggtttggtgacacacacctgttgtctcagttacttgggaggctgaagtcaaggggaatcccttgaggccaggatgtcaagcctgctgtgagctatgattatgccattgcactccagcatgggtaacgcagtgagaccctgtccaaaaaaaaatgacaaaa
  509. i rheMac2.chr10 I 104 I 1422
  510. s calJac1.Contig13114 14954 170 + 38599 -------------taataaaa----------aTtaaaaaa--caaaatcagccaggcatggtagcacatgcctgtagtcccagctacttgggaggctgaggc--agaagaattgcttgaacc-aggaggcggaggttgcagtgagctgagatcacgccactgcagtccagcctgggcgacacagcaagattccatctc----------------
  511. i calJac1.Contig13114 C 0 I 21
  512. a score=17854.0
  513. s ponAbe2.chr22 13836439 22 + 46535552 GAGGTAGAAGGTGGAGGAGCCA
  514. s hg18.chr22 16117191 22 + 49691432 GAGGTAGAAGGTGCAGGAGCCA
  515. i hg18.chr22 C 0 C 0
  516. s panTro2.chr22 16133621 22 + 50165558 GAGGTAGAAGGTGGAGGAGCCA
  517. i panTro2.chr22 C 0 C 0
  518. s rheMac2.chr10 61917499 22 + 94855758 GAGGTACAAGGTGGAGGAACCA
  519. i rheMac2.chr10 C 0 C 0
  520. s calJac1.Contig13114 15145 22 + 38599 GAGGTGGAAGGTGGAAGAGCCA
  521. i calJac1.Contig13114 I 21 C 0
  522. a score=39778.0
  523. s ponAbe2.chr22 13836630 56 + 46535552 CCATTAACCCCATAGAAATCTGAACAGGAAATGCTCAAGAAGATGGTATGCTTGGA
  524. s rheMac2.chr10 61917518 52 + 94855758 CCATTAATCCCACAGAAATCTGAACAGGAAATGCTCAAGAAGATGGTATGCT----
  525. i rheMac2.chr10 N 0 I 3
  526. s panTro2.chr22 16133640 52 + 50165558 CCATTAATCCCATAGAAATCTGAACAGGAAATGCTCAAGAAGATGGTATGCT----
  527. i panTro2.chr22 N 0 I 3
  528. s hg18.chr22 16117210 52 + 49691432 CCATTAATCCCATAGAAATCTGAACCGGAAATGCTCAAGAAGATGGTATGCT----
  529. i hg18.chr22 N 0 I 3
  530. s calJac1.Contig13114 15167 51 + 38599 ----TAATCCCATGGAAAACTGCACAGGAAATGCTCAAGAAGATGGTATGCT-GGC
  531. i calJac1.Contig13114 C 0 C 0
  532. a score=69882.0
  533. s ponAbe2.chr22 13836686 82 + 46535552 GCTTCTGCCCTTTGGAACCCCTGACCTGCAAGAGGCAACTCCCAGAGCTTCCCTAAGATAAAAGTTTTAACTGGTGCCTCAG
  534. s hg18.chr22 16117265 82 + 49691432 GCTTCTGCCCTTTGGAACCCCTGACCTGCAAGAGGCAACTCCCAGAGCTTCCCTAAGATAAAAGTTTTAACTGGTGCCTCAG
  535. i hg18.chr22 I 3 C 0
  536. s panTro2.chr22 16133695 82 + 50165558 GCTTCTGCCCTTTGGAACCCCTGACCTGCAAGAGGCAACTCCCAGAGCTTCCCTAAGATAAAAGTTTTAACTGGTGCCTCAG
  537. i panTro2.chr22 I 3 C 0
  538. s rheMac2.chr10 61917573 80 + 94855758 GCCTCTGCCCTTTGCAACCCCTGACCTGCAAGAGGCAACTCCCAGAGCTTCCCTAAGAT--AAGTTTTAACTGGTGGCTCAG
  539. i rheMac2.chr10 I 3 C 0
  540. s calJac1.Contig13114 15218 82 + 38599 GCTTCCGCCCTTCGGAACCCCTGACCTGCAAGAGGCAATTCCCAGAGCTTCCCCAAGATGAAGGTTTTAACGGGTGCCTCAG
  541. i calJac1.Contig13114 C 0 I 45
  542. a score=265723.0
  543. s ponAbe2.chr22 13837113 298 + 46535552 acaggctacaggtgtgagcca--ACACCCCACCTAAGGGGTGATTTTATTGGGTTATCCTGTCTCTGGAGAAGGAAACGGGCTACAGTCAATGAAATTAGCattctaaaagcaagagaatctgtaaagtagaaaaggaccttgagatgggtgcatgcgttttacacaggaaggcccagacttggcccagtctggcccaagaccacctaacttgtcagtagcaaagctgggatgaataaaagctcagcttcctgactccctgtccccagttctttccaccactccagccggccactcCCAA
  544. s rheMac2.chr10 61917998 298 + 94855758 acaggctaca-gcgtgagccaacacatccCACCT-AGGGGAGATTTTATTGGGTTACCTAGTCCCTGGAGAAGGAAATGGGCTATAGTCAATGAAATTAGCattctaaaagcaagagaatctgtaaagtagaaaaggaccttgagatgggagcctgcggtttacacgggaaggcccagacttggtccagtctggcccaagaccacctaacttgtcagtagcaaagctgggatgaataaaagctcagcttcctgactccctgtccccagttctttccaccactccagtcagcggctccCAA
  545. i rheMac2.chr10 C 0 C 0
  546. s panTro2.chr22 16134130 300 + 50165558 acaggctacaggtgtgagccaacacacccCACCTAAGGGGCGATTTTATTGGGTTATCCTGTCTCTGGAGAAGGAAAGGGGCCACAGTCAATGAAATTAGCattctaaaagcaagagaatctgtaaagtagaaaaggaccttgagatgggagcatgcgttttacacaggaaggcccagacttggcccagtctggcccaagaccacctaacttgtcagtagcaaagctgggatgaataaaagctcagcttcctgactccctgtccccagttctttccaccactccagccggccactcCCAA
  547. i panTro2.chr22 C 0 C 0
  548. s hg18.chr22 16117704 300 + 49691432 acaggctacaggtgtgagccaacacacccCACCTAAGGGGCGATTTTATTGGGTTATCCTGTCTCTGGAGAAGGAAACAGGCCACAGTCAATGAAATTAGCATTCTAAAAGCAAGAGAATCTGTAAAGTAGAAAAGGACCTTGAGATGGGAGCATGCGTTTTACACAGGAAGGCCCAGATTTGGCCCAGTCTGCcccaagaccacctaacttgtcagtagcaaagctgggatgaataaaagctcagcttcctgactccctgtccccagttctttccaccactccagctgGCCACTCCCAA
  549. i hg18.chr22 C 0 C 0
  550. s calJac1.Contig13114 15345 277 + 38599 -----------GTGTGA-CTA----ACCACCACTAAGGGGTGATTTTATTGAGTTACCTTGTCTCTGGAGAAGGAAATGGGCT--AGTCAAAGAAATTAGCATTCTAAAGGCACGAGAATCTGTAAAGT-----AGGGCCTTGAGATGAGAGCCTGcattttacacaggaaggcccagacttggcccagtctggcccaagaccacctaactcgtcagtggcagagctgggatgaacaaaagctcagcttcctggctccccatcccctgctctttccaccactccaGTCGGCCGCTCCCAA
  551. i calJac1.Contig13114 I 45 C 0
  552. a score=98859.0
  553. s ponAbe2.chr22 13837411 134 + 46535552 TCCCTCTGCTAAGCCAACCCACCTACAGACAGTGTCACTGTCCCTCATTCCCCGAATCCCTTACTCAATCCCCCACAGCC-TTTCCATTTTTCCTGCCTTCCTAGCGCTATAGGGTTGGCTGGGCAGAGTGCTCA
  554. s hg18.chr22 16118004 130 + 49691432 TCCCCCTGCTAAGCCAACCCACCT----ACAGTGTCACTGTCCCTCATT-CCCAAATCCCTTACTCAATCCCCCACAGCCTTTTCCATCCTTCCTGCCTTCCTAGCGCTATAGGGTTGGCGGGGCAGAGTGCTCA
  555. i hg18.chr22 C 0 C 0
  556. s panTro2.chr22 16134430 134 + 50165558 TCCCCCTGCTAAGCCAACCCACCTACAGACAGTGTCACGGTCCCTCATT-CCCGAATCCCTTACTCAATCCCCCACAGCCTTTTCCATCTTTCATGCCTTCCTAGCGCTATAGGGTTGGCGGGGCAGAGTGCTCA
  557. i panTro2.chr22 C 0 C 0
  558. s rheMac2.chr10 61918296 135 + 94855758 TCCCTCTGCTAAGCCGACCCACCTACAGACAGTGTCGCTGTCCCTCATTCCCTGAATCTCTTACTCAATCCCCTACAGCCTTTTCCATCTTTCCTGCCTCCCTAGCGCTATAGCGTTGGCAGGGCAGAGTGCTCA
  559. i rheMac2.chr10 C 0 C 0
  560. s calJac1.Contig13114 15622 135 + 38599 TCCCTCTGCTAAGCCAACATACCTACAGACAGTGTCACGATCCCCCATTCCCTGAATCCCTCACTCAGTCCCGGACAGCTGTTTCCATCTTTCCTGAATCTCCAGCGTCACCGGGTTGGTGGGGCAGAGTGCTCA
  561. i calJac1.Contig13114 C 0 C 0
  562. a score=72847.0
  563. s ponAbe2.chr22 13837545 89 + 46535552 GAGACCAGCAAGCTGGGATGTGGGGTCTTCCCAAGGTGGTGCAGGATGTTTTGGCTGCTTAGAGGAGGAGCAGGGCAGGCATCTGCAAA
  564. s calJac1.Contig13114 15757 85 + 38599 GAGAGCAG-AAGCTGGGATGTGGGGTCTTCCCAAGGTGGTGCGGGGTTTCTTTGCTGTTTA---AAAAAGCAGGGCAGGCATCTGCAAA
  565. i calJac1.Contig13114 C 0 C 0
  566. s rheMac2.chr10 61918431 89 + 94855758 GAGACCAGCAAGCTGGGATGTGGGGTCTTCCTGAGGTGGTGCAGGATTTTTTGGCTGCTTAGAGGAGGAGCAGGGCAGGCATCTGCAAA
  567. i rheMac2.chr10 C 0 C 0
  568. s panTro2.chr22 16134564 89 + 50165558 GAGACCAGCAAGCTGGGATGTGGGGTCTTCCCGAGGTGGTGCGGGATATTTTGGCTGCTTAGAGGAGGAGCAGGGCAGGCATCTGCAAA
  569. i panTro2.chr22 C 0 C 0
  570. s hg18.chr22 16118134 89 + 49691432 GAGACCAGCAAGCTGGGATGTGGGGTCTTCCCGAGGTGGTGCAGGATGTTTTGGCTGCTTAGAGGAGGAGCAGGGCAGGCATCTGCAAA
  571. i hg18.chr22 C 0 C 0
  572. a score=977545.0
  573. s ponAbe2.chr22 13837634 919 + 46535552 AGGCATCTGCATTTCTTACACAGTCCCTAACTGCCAGGCCCAGTGCCAGATCGCAGACCCTTTGTCAACAGAGATGCCCTGGCTTTGTAAGCCAAGAGGGAGGCAGAAAAGATCCTCTAGCAACACAGACTGGCCTCTGGGGGGAGGCGGAAGAGGGAATTGTCTACGAAAGTTCTCATTTAAACAAACAAACAACAAGATGAAAATAATAAGCTAGACAAAGAGCCAAGGGGGAACAGCAAGCAAACTCCTGAAATTGCACTGTAATTAAAGCATAGCTGCCTTCCAGATTCTCAAGTGCTGGGATGGGCTGGAGGG-----ATGTTTACTAACCTGGTCAAAAGACATCAGGGCAAATTAAGCTGCATCCCAGTCTTGCCTCCAAACACTTTAGCATGCAAATGAGACATGCCAAATTTGCATCTGGGGCATGAAGGGGACCAATAAGTAACCTGCACAGGTCTTGGGCGTTTGGTGAGAAGAATCCAAACTGGCCACCGTGAAGGGAGGCACTGGGGAATGCTGAGCAGGGGGTGGGGTGGTTATCCTGTTTCACCAGAGACGA---TTTTTTTTTGGTTTGGTCCAGGCCGATCTCGAGGCTAGGAGCTAGCTGACTAGCCCTCCAGGACCTTGCCAATTCACATATGAGAGTACACCAGACTTAGGCCCAGGAAGATTTACATGAGTTTGTGCCAGTATTAACCCCCGGAGATGCCTACCCAATCACAGCCATTGCGCCAAGGCAAGGAAGGCGTTGCCAGGGCGTTTGCATGACAGAAACTAGCATATGGGCTCAAGAGAAACCTTTCTGGGCAGAGGGAGGGAGGGCCATACCCACATGAATCACTCTCTGGTGGTTTTGCTTTGGTTTCAGAACCTGTGGCTAAGGCAGAAGGACCAGTAGGGCCCCTGGCCTCGTTGA
  574. s calJac1.Contig13114 15842 905 + 38599 AGGCAGCTGCATTTCTTACACAGTTCCTAACCGCCAGGCCCAGTGCCAGACAGCAGACCCTTTGTCAACAGAGATACCCTGGCTTTGTAAACCAAGAGGGAGGCAGAAAAAGTCCTCTAGCAACACAGACTGGCCTCT-GGGGGAGGCGGGAGAGGGAACTGTCTACCGAAGTTCTCATTTAAACAAACAAACAAGAAGACAAA---AATAAGCTAGACAAAGAGCCAAGGGGGAACAGGAAGCAA--CTCTGAAATTACACTGTAATTGAAGCAGAGCTGCTTTCCAGATTCCCAAGTGCTGGGACAGGCTTGGGGC-----ACGTTTATCAACCTGGTCAAAAG----CAGGACAAATTAAGCTGCATCCCAGCCTTGCCTCTGAAGAATTTAGCATGCAAATGAAACATGCTAAGCTTGCATCTGGGGCATGAAGCGGACCAGTAAGTAACCTGCACACGTCTTGGGCGTTTAGAGAGAAGAATCGAAACTGGGCACTG-AAAGGGAGGCACTAGGGAA-GCTGAGCAGGGGGT-GGGTGGCCATCCTGCTTCACCAGGGACGG----TTTTCTTTGGTTTCGTCCAGGCCGATACCGAGGCTAGAAGCTAGCTGGCTGGCCCTCCAGGACCACGCCAGTTCACATATGAGAGTACACCAGACTTAGGCGCAGGAAGACTTACGTGAGTTTGTGCCAGTATTAACCCCGAGGGATGCCTACCCAATCAGAGCCATTGCGCCAAGGCAAGGAGGGCACTGCCAGGGCGTTTGCATGACAGAAACTAGCATATGGGCTCAAGAGAAACCTTTCTGGGCAGGGGAAGGGAGGGCCATACCCACAAGAATCACTCTCTGGTGGTTTCACTTTGGTTTCAGAACCTGTGGCTAAGGCAGAACGACCAGGAGGGCCCCTGGCCCCGTTGC
  575. i calJac1.Contig13114 C 0 C 0
  576. s rheMac2.chr10 61918520 904 + 94855758 AGGCATCTGCATTTCTTACACAGTCCCTAACCGCCAGGCCCAGTGCCAGATCGCAGACCCTTTGTCAACAGAGATGCCCTGGCTTTGTAAACCAAGAGGGAGGCAGAAAAAGTCCTCTAGCAACACAGACTGGCCTCT-GGGGCAGGCGGGAGAGGGAATTGTCTGTGAAAGTTCTCATTTAAACAAACAAACAACAAGATGAAAATAATAAGCTAGACAAAGAGCCAAGGGGGAACAGCAAGCAAACTCCTGAAATGGCACTGTAATTAAA---------------------TAAAGTGCTGGGATGGGCTGGGGGGGAGATGGGTTTATTAACCTGGTCAAAAGACATCAGGGCAAATTAAGCTACATCCCAGCCTTGCCTCCAAACAATTTAGCATGCAAATGAGACATGCTAAATTTGCATCTGGGGCATGAAGGGGACCAATAAGTAACCTGCACAAGTCTTGGGCGTTTGGAGAGAAGAATCCAAACTGGCCACCGCGAAGCGAGGCACTGGGGAACGCAGAGCAGGGGGTGGGGTTGCTATCCTGTTTCACCAGAGACGATTTTTTTTTTTTGGTTTGGTCCAGGCTGATCTCGAGGCTAGGAGCTAGCTGACTGGCCCTCCAGGACCATGCCAGTTCACATATGAGAGTACACCAGACTTAGGCCCAGGAAGATTTACATGAGTTTGTGCCAGTATTAACCCCGGGAGATGCCTACCCAATCAGAGCCACTGCGCCAAGGCAAGGAGGGCATTGCCAGGGCGTTTGCATGACAGAAACTAGCATATGGGCTCAAGAGAAACCTTTCTGGGT-GGGGGAGGGAGGGCCATACCCACATGAATCACTCTCTGGTGGTTTTGCTTTGGTTTCAGAACCTGTGGCTAAGGCAGAAGGACCAGGAGGGCCCCTGGCCGCGTTGC
  577. i rheMac2.chr10 C 0 C 0
  578. s panTro2.chr22 16134653 919 + 50165558 AGGCATCTGCATTTCTTACACAGTCCCTAACTGCCAGGCCCAGTGCCAGATCGCAGACCCTTTGTTAACAGAGATGCCCTGGCTTTGTAAACCAAGAGGGAGGCAGAAAAAGTCCTCTAGCAACACAGACTGGCCTCT-GGGGGAGGCGGGAGAGGGAATTGTCTACGAAAGTTCTCATTTAAACAAACAAACAACAAGATGAAAATAATAAGCTAGACAAAGAGCCAAGGGGGAACAGCAAGCAAACTCCTGAAATTGCACTGTAATTAAAGCATAGCTGCCTTCCAGATTCTCAAGTGCTGAGATGGGCTGGAGGG-----ATGTTTACTAACCTGGTCAAAAGACATCAGGGCAAATTAAGCTGCATCCCAGCCTTGCCTCCAAACACTTTAGAATGCAAATGAGAGATGCCAAATTTGCATCTGGGGCATGAAGGGGACCAATAAGTAACCTGCACAGGTCTTGAGCGTTTGGTGAGAAGAATCCAAACTGGCCACTGTGAAGGGAGGCACTGGGGAATGCTGAGCAGGGGGTGGGGTGGCTATCCTGTTTCACCAGAGATGA--TTTTTTTTTTGGTTTGGTCCAGGCCGATCTCGAGGCTAGGAGCTAGCTGACTAGCCCTCCGGGACCATGCCAATTCACATATGAGAGTACACCAGACTTAGACCCAGGAAGATTTACATGAGTTTGTGCCAGTATTAACCCCCGGAGATGCCTACCCAATCAGAGCCATTGCGCCAAGGCAAGGAAGGCATTGCCAGGGCGTTTGCATGACAGAAACTAGCATATGGGCTCAAGAGAAACCTTTCTGGGCAGGGGGAGGGAGGGCCATACCCACATGAATCACTCTCTGGTGGTTTTGCTTTGGTTTCAGAACCTGTGGCTAAGGCAGAAGGACCAGTAGGGCCCCTGGCCGCGTTGA
  579. i panTro2.chr22 C 0 C 0
  580. s hg18.chr22 16118223 918 + 49691432 AGGCATCTGCATTTCTTACACACTCCCTAACTGCCAGGCCCAGTGCCAGATCGCAGACCCTTTGTCAACAGAGATGCCCTGGCTTTGTAAACCAAGAGGGAGGCAGAAAAAGTCCTCTAGCAACACAGACTGGCCTCT-GGGGGAGGCGGGAGAGGGAATTGTCTACGAAAGTTCTCATTTAAACAAACAAACAACAAGATGAAAATAATAAGCTAGGCAAAGAGCCAAGGGGGAACAGCAAGCAAACTCCTGAAATTGCACTGTAATTAAAGCATAGCTGCCTTCCAGATTCTCAAGTGCTGAGATGGGCTGGAGGG-----ATGTTTACTAACCTGGTCAAAAGACATCAGGGCAAATTAAGCT-CATCCCAGCCTTGCCTCCAAACACTTTAGAATGCAAATGAGACATGCCAAATTTGCATCTGGGGCATGAAGGGGACCAATAAGTAACCTGTACAGGTCTTGAGCGTTTGGTGAGAAGAATCCAAACTGGCCACTGTGAAGGGAGGCACTGGGGAATGCTGAGCAGGGGGTGGGGTGGCTATCCTGTTTCACCAGAGATGA--TTTTTTTTTTGGTTTGGTCCAGGCCGATCTCGAGGCTAGGAGCTAGCTGACTAGCCCTCCAGGACCATGCCAATTCACATATGAGAGTACACCAGACTTAGGCCCAGGAAGATTTACATGAGTTTGTGCCAGTATTAACCCCCGGAGATGCCTACCCAATCAGAGCCATTGCGCCAAGGCAAGGAAGGCATTGCCAGGGCGTTTGCATGACAGAAACTAGCATATGGGCTCAAGAGAAACCTTTCTGGGCAGGGGGAGGGAGGGCCATACCCACATGAATCACTCTCTGGTGGTTTTGCTTTGGTTTCAGAACCTGTGGCTAAGGCAGAAGGACCAGTAGGGCCCCTGGCCGCGTTGA
  581. i hg18.chr22 C 0 C 0
  582. a score=367902.0
  583. s ponAbe2.chr22 13838553 221 + 46535552 TTTTTCTCCTCCCAGCTGCTTCTGTCTCTCTCTCAGGCTCCTGGAAACAAAACAGCTGAGCAGATAAACAAGTCACCACCTGCTCCCTCCTCTCCCGTGACACCGCCCC-GTCCCCAAGTCCCACCCCTTCTTCTTGCACTCTCTCCCTCCATTCCTCCCTGAAGCCAAACTT-CCGGCAGCAGCTGCAGCTGCTCTCTCCCCTCCCGCGCCTGCCTC---------CCCAG
  584. s hg18.chr22 16119141 222 + 49691432 TTTTTCTCCTCCCAGCTGCTTCTGTCTCTCTCTCAGGCTCCTGGAAACAAAACAGCTGAGCAGATAAACAAGTCACCACCTGCACCCTCCTCCCCCGTGACACCGCCCCTGTCCCCAAGTCCCACCCCTTCTTCTTGCACTCTCTCCCTCCATTCCTCCCTGAAGCCAAACTT-CCGGCAGCAGCTGCAGCTGCTCTCTCCCCTCCCATGCCTGCCTC---------CCCAG
  585. i hg18.chr22 C 0 C 0
  586. s panTro2.chr22 16135572 222 + 50165558 TTTTTCTCCTCCCAGCTGCTTCTGTCTCTCTCTCAGGCTCCTGGAAACAAAACAGCTGAGCAGATAAACAAGTCACCACCTGCTCCCTCCTCCCCCGTGACACCGCCCCTGTCCCCAAGTCCCACCCCTTCTTCTTGCACTCTCTCCCTCCATTCCTCCTTGAAGCCAAACTT-CCGGCGGCAGCTGCAGCTGCTCTCTCCCCTCCCATGCCTGCCTC---------CCCAG
  587. i panTro2.chr22 C 0 C 0
  588. s rheMac2.chr10 61919424 230 + 94855758 TTTTTCTCCTCCCAGCTGCTTCTGTCTCTCTCTCAGGCTCCTGGAAACAAAACAGCTGAGCAGATAAACAAGTCACCACCTGCTCCCTCCTCCCCCGTGACACCGCCCCTGTCCCCAAGTCCCACCCCTTCTTCTTGCACTCTCTCCCTCCATTCCTCCCTGAAGCCAAACTT-CCGGCAGCAGCTGCAGCTGCTCTC-CCCCTCCCGTGCCTGCCTCCCAGCACAGCCCAG
  589. i rheMac2.chr10 C 0 C 0
  590. s calJac1.Contig13114 16747 219 + 38599 TTTTTCTCCTCCCAGCTGCTTCTGTCTCTCTCTCAGGCTCCTGGACACAAAACAGCTGAGCAGATAAACAAGTCACCACCTGCTCCCTCCTCCCCCGTGACACCGCCCCTGTCCCCAAGTCCCACCCCTTCTTCTTGCCCTCTCTCCCTCCATTCCTCCCTGAAGCCAAACTTCCCAGCAGCAGCTGCAGCTGCTCGCTCCCCTCCCGTG---GCCT----------CCCAG
  591. i calJac1.Contig13114 C 0 C 0
  592. a score=461482.0
  593. s ponAbe2.chr22 13838774 434 + 46535552 CACAGTCCCCTGCAGCAGCCCCTGCCTCACCAATGGCAAATGAGGAACATGTGTACAGAGCCCTGGGCTCTCCCTCCTCCTGAGGCCATTTCCAACAAAACACTTGTGCTTTCTGAAAGTTAGATGTGGAGCTCTGGAGTCCTCAAGGAAAACGGGTTTATGGCATCCGCCAGCCCTGGAGCCAGTGAGTGTCT-GGCCCCTTGGCCCAAAGCCCCACTGCCAGGCACAGGCAAACTGGGAGGAAGGGGTTAATCTGAGCAGAGGAGGCCAGGAGGGGCCCAGCTCCATTCCCGACTGCAGAGGACGCTCATCCCCGGGATGGAGGTCAGCGGGAAGCAGCTCAAAGAGGCCAGGAGGCCAAGGCCCAGTTTAAAACCTGAATGAAGGCCACCTTTTCAGTAGCATGCACGTGTGTG--TGCACACACATGTACACA
  594. s hg18.chr22 16119363 436 + 49691432 CACAGTCCCCTGCCGCAGCCCCTGCCCCACCAATGGCAAATGAGGAACATGTGTATAGAGCCCTGGGCTCTCCCTCCTCCTGAGGCCATTTCCAACAAAACACTTGTGCTTTCTGAAAGTAAGATGTGGAGCTCTGGAGTCCCCAAGGAAAACGGGTTTATGGCATCCGCCAGCCCTGGAGCCAGTGAGTGTCT-GGCCCCTTGGCCCAGAGCCCCACTGCCAGGCACAGGCAAACTGGGAGGAAGGGGTTAATCTGAGCAGAGGAGGCCAGGAGGGGCCCAGTTCCATTCCCGACTGCAGGGGATGCTCATCCCCGGGATGGAGGTCAGCAGGAAGCAGCTCAAAGAGGCCAGGAGGCCAAGGCCCAGTTTAAACACTGAATGAAGGCCACCTTTTCAGTAGCATGCACATGTGTGCATGCACACACACGTACACA
  595. i hg18.chr22 C 0 C 0
  596. s panTro2.chr22 16135794 436 + 50165558 CACAGTCCCCTGCCGCAGCCCCTGCCCCACCAATGGCAAATGAGGAACATGTGTACAGAGCCCTGGGCTCTCCCTCCTCCTGAGGCCATTTCCAACAAAACACTTGTGCTTTCTGAAAGTAAGATGTGGAGCTCTGGAGTCCCCAAGGAAAACGGGTTTATGGCATCCGCCAGCCCTGGAGCCAGTGAGTGTCT-GGCCCCTTGGCCCAGAGCCCCACTGCCAGGCACAGGCAAACTGAGAGGAAGGGGTTAATCTGAGCAGAGGAGGCCAGGAGGGGCCCAGCTCCATTCCCGACTGCAGGGGATGCTCATCCCCGGGATAGAGGTCAACAGGAAGCAGCTCAAAGAGGCCAGGAGGCCAAGGCCCAGTTTAAACCCTGAATGAAGGCCACCTTTTCAGTAGCATGCACATGTGTGCATGCACACACACGTACACA
  597. i panTro2.chr22 C 0 C 0
  598. s rheMac2.chr10 61919654 435 + 94855758 CACAGTCCCCTGCAGCAGCCCCTGCCCCACCAATGGCAAATGAGGAACATGTGTACAGAGCCCTGGGCTCTCCCTCCTCCTGAGGCCATTGCCAACAAAACACTTGTGCTTTCTGAAAGTAAGATGTGGAGCTCTGGAGTCCCCAAGGAAAACGGGTTTATGGCATCCGCCAGCCGTGGAGCCAGTGAGTGTCT-GGCCCCTTGGCCCAGAGCCCCACTGCCAGGCACAGGCAAACGGGGAGGAAGGGGTTAATCTGAGCAGAGGAGGCC-GGGGGGGCCCAGCTCCATTCCCGACTGCAGGGGACGGTCATCCCCGGGATGGAGGTCAGCAGGAAGCAGCTCAGAGAGGCCAGGAGGCCAAGGCCCAGTTTAAACCCTGAATGAAGGCCACCTTTTCAGTAGCATGCACACGTGTGCGTGCACACACAGATACACA
  599. i rheMac2.chr10 C 0 C 0
  600. s calJac1.Contig13114 16966 427 + 38599 CACAGTTCCCTGCAGCAGCTCCTGCCTCACCAATGGCAAATGAGGAACATGTGTACAGAGCCCTGGGCTCTCTGTCCTCCCAGGGCCATTTCAAACAAAACACTTGTGCTTTCTGAAAGTAAGATATGGAGCTCTGGAGTCCCCAAGGAAAAGGGGTTTATGGCGTCCA-CAGCCCTGGAGCCAACGAGTGTCTGGGCCCCTTGGCCAAGAGCCCCACTGCCAGGCACAGGCAAACTGGGGGGAAGGGGTTAATCTGAGCAGAAGACGCCAGGAGGGGCCCAGCTTCATTCCCGATTGCAGGGGAGGCTCCTCCTT-GGATGGAGGTCAGCAGGAAGCTGCTCAGAGAGGCCAGGAGGCCAAGGCCCAGTTTAAACCCTGAATGAAGGCCACCTTTTCAGTAGCATGCACGTGTGTGCGTGCACACACA--------
  601. i calJac1.Contig13114 C 0 C 0
  602. a score=156252.0
  603. s ponAbe2.chr22 13839208 144 + 46535552 CTCATACACACACGTTACCATGCACATGGTATCCTCTTATTAACAACATTAAGGTTGTCACGACAGACTCTGGGTTTGGTGTCAGAAGCCTTGCATCAGCGCTGTTTAATAAGTCCCCAGTGCCAATGGTAGGCACTATGGAGG
  604. s hg18.chr22 16119799 144 + 49691432 CTCATACACACATGTTACCATGCACATAGTATCCTCTTATTAACAACGTTAAGGTTGTCACGACAGACTCTGGGTTTGGTGTCGGAAGCCCTGCATCAGGGCTGTTTAATAAGTCCCCAGCGCCAATGGTAGGCACTATGGAGG
  605. i hg18.chr22 C 0 C 0
  606. s panTro2.chr22 16136230 144 + 50165558 CTCATACACACATGTTACCATGCACATAGTATCCTCTTATTAACAACGTTAAGGTTGTCACGACAGACTCTGGGTTTGGTGTCGGAAGCCCTGCATCAGGGCTGTTTAATAAGTCCCCAGTGCCAATGGTAGGCACTATGGAGG
  607. i panTro2.chr22 C 0 C 0
  608. s rheMac2.chr10 61920089 144 + 94855758 CTCGTACACACACGTTACCATGCACATGGTATCCTCTTATTAACAACGCTAAGGTTGCCACAACAGACTCTGGGTTTGGTGTCAGAAGCCCTGCATCAGCGCTGTTTAATAAGTCCCCAGTGTCCATGGTAGGCACTATGGAGG
  609. i rheMac2.chr10 C 0 C 0
  610. s calJac1.Contig13114 17393 141 + 38599 --CGTACACACGTGTTAGCATGCACATGGCGTCCTCTAATTAACAACAGAACAGTTGTCACAACAGACTCTGGGTTTGGTGTCAGAAGCCCTG-ATCCGTGCTGCTTAATAAGTCCCCAGTGCCAGAGGCAGGCACTATGGAGG
  611. i calJac1.Contig13114 C 0 C 0
  612. a score=144221.0
  613. s ponAbe2.chr22 13839352 181 + 46535552 CCCAAACTGTTGGGGAGGGGAACGTCAGAGTGCCTCCTCCTAGGGAGGGATGTGTGTGCCAGGAGCTGGGTGATGGAGCTCCCCCAGAGGTTTTCTTGCCAGTTTAGAGTTTAACTCTGGGTTAGTAGGGCTCACCTTAGTTCTGAGGCATGTAGGTGAAGACACTACAATTAGGAAGGTG
  614. s hg18.chr22 16119943 181 + 49691432 CCCAAACTGTTGGGGAGGGGAACCTCAGAGTGCCTTCTCCCAGGGAGGGGTGTGTGTGCCAGGAGCTGGGTGATGGAGCTCCTCCAGAGCTTTTCTTGGAAGTTCAGAGTTTAACTCTGGGTTAGTAGGGCTCACCTTAGTTCTGAGGCATGTAGGTGAAGACACTGCAATTAGGAAGGTG
  615. i hg18.chr22 C 0 C 0
  616. s panTro2.chr22 16136374 181 + 50165558 CCCAAACTGTTGGGGAGGGGAACCTCAGAATGCCTTCTCCCAGGGAGGGGTGTGTGTGCCAGGAGCTGGGTGATGGAGCTCCTCCAGAGCTTTTCTTGGAAGTTCAGAGTTTAACTCTGGGTTAGTAGGGCTCACCTTAGTTCTGAGGCATGTAGGTGAAGACACTGCAATTAGGAAGGTG
  617. i panTro2.chr22 C 0 C 0
  618. s rheMac2.chr10 61920233 181 + 94855758 CCCAAACTGTTGGGGAGGGGAACCGCAGAGTGCCTCCTCCCAGGGAGGGGTGTGTGTGCCAGGAGCTGGGTGGTGGAGCTCCCCCAGAGGTTTTCTTGGCAGTTTAGAGTTTAGCTCTGGGTTAGTAGGGCTCACCTTAGTTCTGAGGCATGTAAGTAAAGACACTGCAGTTAGGAAGGGG
  619. i rheMac2.chr10 C 0 C 0
  620. s calJac1.Contig13114 17534 181 + 38599 CCCCAGCTGGTGGGGAAGGGAAGCCCAGAGTGCCTCCTCCCAGCGAGGGGTGTGCGTGCCAGGAGCTGGATGGTGCAGCTCCCCCAGAGGTTTTCTTGGCAGTTTAGGGTTTAACTTTGGGTTACTAGGGCTCACCTTGGTTCAGAGGCACCTAAGTGAAGACACTGCAGCTAGGATGGTG
  621. i calJac1.Contig13114 C 0 C 0
  622. a score=34073.0
  623. s ponAbe2.chr22 13839533 42 + 46535552 ATGGGGCAGGGGACCAGCCTGTCTTCACTCCCAAGCTTATGt
  624. s hg18.chr22 16120124 42 + 49691432 ATGGGGCAGGGGACTAGCCTGTCTTCACCCCCAGGCTTATGt
  625. i hg18.chr22 C 0 C 0
  626. s panTro2.chr22 16136555 42 + 50165558 ATGGGGCAGGGGACCAGCCTGTCTTCACCCCCAAGCTTATGT
  627. i panTro2.chr22 C 0 C 0
  628. s rheMac2.chr10 61920414 42 + 94855758 ATGGGGCAGGAGACCAGCCTGTCTTCACCCCCAAGCTTCCGT
  629. i rheMac2.chr10 C 0 C 0
  630. s calJac1.Contig13114 17715 42 + 38599 ATGAGGCAGGGGGCCAGCCTGTCTTCACCCCCAAGCTTCCAT
  631. i calJac1.Contig13114 C 0 C 0
  632. a score=12749.0
  633. s ponAbe2.chr22 13839718 27 + 46535552 cttcttctttctttttttttttttttt
  634. s panTro2.chr22 16136660 22 + 50165558 cttcttctttc-----ttttttttttt
  635. i panTro2.chr22 C 0 C 0
  636. s hg18.chr22 16120232 22 + 49691432 cttcttctttc-----ttttttttttt
  637. i hg18.chr22 C 0 C 0
  638. s calJac1.Contig13114 17757 27 + 38599 Attctttttttcttttttttttttttt
  639. i calJac1.Contig13114 C 0 C 0
  640. s rheMac2.chr10 61920473 16 + 94855758 -----------tttttttttttttttt
  641. i rheMac2.chr10 C 0 C 0
  642. a score=43331.0
  643. s ponAbe2.chr22 13839745 56 + 46535552 tgagatggagtctagctctgtcacccaggctggagtgcaatggtgcaatcttagct
  644. s panTro2.chr22 16136682 56 + 50165558 tgagatggaggctagctctgtcacccaggctggagtgcaatggtgcgatctcagct
  645. i panTro2.chr22 C 0 C 0
  646. s hg18.chr22 16120254 56 + 49691432 tgagatggagtctagctctgtcacccaggctggagtgcaatggtgcgatctcagcc
  647. i hg18.chr22 C 0 C 0
  648. s calJac1.Contig13114 17784 55 + 38599 tgagatggagtctctctctgtcgcccaggttggagtgcagtggtacgacct-agtt
  649. i calJac1.Contig13114 C 0 C 0
  650. s rheMac2.chr10 61920489 56 + 94855758 tgagatggagtctagctctgtcacccaggctggagtgcagtgttacgatctcagct
  651. i rheMac2.chr10 C 0 M 724
  652. a score=281868.0
  653. s ponAbe2.chr22 13840978 353 + 46535552 agagtctcactctgtctcccaggctggagtgcagtggtgtgaccttgcctcactgcagccttgaactcctgggctcaaggaatcctcctgcttcagcctcctgagtctataggtgcacaccaccacacccagctaatttttaagtgctttgtagagac-agggtctccctatgttgcccaagctggtctcaaactcctggcctgaagcgatcctcttgccttggcctccctaagtgctgagattacagttgtgagccaccatgcccagACCACATTTCCCCAGAACTC-TATCTTTCCTGCTTGTGGACGAGGCAGGGGATGGATTTGGTGTCTGAGAAAGAAAAACAC-ACCTTT
  654. s hg18.chr22 16120905 354 + 49691432 agagtctcgctctgtctcccaggctggagtgcagtggggtgacctttcctcactgcagcattgaactcctgggctcaaggaatcctcccgctttagcctcctgagtctataggtgcacaccaccacacccagctaatttttaagtgttttgtagagac-agggtctccctatgttgcccaagctggtctcaaactcctggcctgaagcgatcctcctgacttggcctctcaaagtgctgagattacagttgtgagccaccatgcccagACCACATTTCCCCAGAACTC-TATCTTTCCTGCTTGTGGACAAGGCAGGGGATGGATTTGGCGTCTGAGAAAGACAAACACAACCTTT
  655. i hg18.chr22 C 0 C 0
  656. s panTro2.chr22 16137694 354 + 50165558 agagtctcgctctgtctcccaggctggagtgcagtggggtgaccttgcctcactgcagcattgaactcctgggctcaaggaatcctcccgcttcagcctcctgagtctataggtgcacaccaccacacccagctaatttttaagtgttttgtagagac-agggtctccctatgttgcccaagctggtctcaaactcctggcctgaagcgatcctcctgccttggcctctcaaagtgctgagattacagttgtgagccaccatgcccagATCACATTTCCCCAGAACTC-TATCTTTCCTGCTTGTGGACAAGGCAGGGGATGGATTTGGTGTCTGAGAAAGACAAACACAACCTTT
  657. i panTro2.chr22 C 0 C 0
  658. s calJac1.Contig13114 18256 350 + 38599 agaggctttctctgtc--ccaggctggagtgcagtggtgtgatcttgcctcactgcagccttgaacttctgggctcaagaaatcctcctgcttcagcctcctgggtctataggtacacac--ccacacgcggctaatttttaaatgctttgtaacgac-agggtctccctatgttgcccaagctggtctcaaactcccggcctcaagcggttttcctgcgttggcctccccaagtgctgacactacagttgtgtaccaccatgcccagccCACATTTCCCCAGAACTCATATCTTTCCTGCTGGTGGACAAGGCAGGGGATGGATCTGGTGTTTGGGAAACACAAACAC-ACCttt
  659. i calJac1.Contig13114 I 155 I 932
  660. s rheMac2.chr10 61921269 337 + 94855758 -----------------cccaggctggagtgcagttgtgtgaccttgcctcactgcagccttgaactcctgggctcaaggaatcctcccgcttcagcctcctgagtctataggtgcacaccaccacacccagctaatttttaagtgttttgtagagacgggggtcaccctatgttgcccaagctggtctcaaactcctggcctcaagcgatcctcctgccttggcctcccaaaatgctgagattacagttgtgagccacgacgcccagACCATATTTCCCCAGAACTC-TATCTTTCCTGCTTGTGGACAAGGCAGGGGATGGATTTGGTGTTTGAGAAAGACAAATAC-ACCTTT
  661. i rheMac2.chr10 M 724 C 0
  662. a score=119904.0
  663. s ponAbe2.chr22 13841331 195 + 46535552 AATTTGCTGACTGTCTCAT-ACCTGTCTGCACAGCCTGCCGCTGTTTCGTGTGGAAAGTAGCAG------TAACCTGGATAGCTCACA--GctgggtttgaaacagttaatggctgagtgaccttgagcaagttacttgacctcccggagcctgtcttctcattggtaaaatgttaacaatatctggctctgactCAGAGTTAA
  664. s panTro2.chr22 16138048 195 + 50165558 AATTTGCTGACTGTCTCAT-ACCTGTCTGCACAGCCTGCTGCTGTTTCGTGTGGAAAGTAACAG------TAGCCTGGATagctcaca--gctgggtttgaaacagttaatggctgagtgaccttgaacaagttacttgacctcccggagcctgtcttctcattggtaaaatgttaacaatatctggctcTGACTCAGAGTTAA
  665. i panTro2.chr22 C 0 C 0
  666. s hg18.chr22 16121259 195 + 49691432 AATTTGCTGACTGTCTCAT-ACCTGTCTGCACAGCCTGCTGCTGTTTCGTGTGGAAAGTAACAG------TAGCCTGGATAGCTCACA--GctgggtttgaaacagttaatggctgagtgaccttgaacaaattacttgacctccctgagcctgtcttctcattggtaaaatgttaacaatatctggctcTGACTCAGAGTTAA
  667. i hg18.chr22 C 0 C 0
  668. s rheMac2.chr10 61921606 186 + 94855758 AATTTGCTGACTGTCTCAT-ACCTGTCTGCACAGCCCGCCACTGTTTTGTGTGGAAAGTAGcaggaacactggcctggatagctcaca--gctgggtttgaaacagttaatggctgagtgaccttgaacaagttacttgacctcccgggaccggtcttctcactggcaaaatgttaacaatgt-------taac--------aa
  669. i rheMac2.chr10 C 0 C 0
  670. s calJac1.Contig13114 19538 183 + 38599 -aactcctgac---ctcatgatccgcccacccaggcttccc-------------aaagtgctggga----ttacaggcatgagccaccgtgcctggcctgaaactgttgatggctgtgtgatcttgaacaagttacttgacctcccagagcctgttttcttattggttaaatgttagaaatatctggctctgactCAAAATTAA
  671. i calJac1.Contig13114 I 932 I 244
  672. a score=383075.0
  673. s ponAbe2.chr22 13841526 491 + 46535552 ATTACTCTTTTGTTTTTCAGGTGGAATTAAGTGACAAGGCAAAGCTAATGTAAGATACATAAAACACCAAAAACACCGAGCATTCTGCCGGGAACCCATTTGGTGCTCAATAAAATCATTGCCCTTTTTTTGGTGTTTTGTTGGAGACAAAACGGAAACACCAAATGGCTGGTGGAAGTAGCAGGAAAAAACGAGACCAAAAACCCAGTGGCTCTGAAGAGGTACCTGCAGACCCACTGGGCAGGGTAGAGAGGAGCCCAGTGGGAACTTTTCTGCCAGGAGGAATCAGTGGGCAGAGCTCTTCTTCCCACTTGTCCAGcagggcttctcatcctcggcaccgctgacatttgtgccagatatttctttgatttggaggctgtcctgtgcactgtcggatgt------ttagcagcatcctcagcctctactctccaggtgaagtagcaagttgtctgcct-cccgcagttatgaccatcagaatgtcCTG-GTGGAGG
  674. s panTro2.chr22 16138243 491 + 50165558 ATTACTCTTTTGTTTTTCAGGTGGAATTAAGTGACAAGGCAAAGCTAATGTAAGATACATAAAACACCAAAAACACCAAGCATTCTGCCGTGAACCCATTTGGTGCTCAATAAAATCATTGCCCTTTTTTTGGTGTTTTGTTGGAGACAAAACGGAAACACCAAATGGCTGGTGGAAGTGGTAGGAAAAAACGAGACCAAAAACCCAGTGGCTCTGAAGAGGTACCTGCAGACCCACTGGGCAGGGTAGAGAGGAGCCCAGTGGGAACTTTTCTGCCAGGAGGAATCAGTGGGCAGAGCTCTTCTTCTCATTTGTCCAGcagggcttctcatcctcagcactgctgacatttgcgccagatatttctttggtttggaggctgtcctgtgcactgtcggatgt------ttaccagcatcgtcagtctctactctccaggtgaagtagcaagttgtctgcct-cccgcagttatgacaatcagaatgtcCTG-GTGGAGG
  675. i panTro2.chr22 C 0 C 0
  676. s hg18.chr22 16121454 491 + 49691432 ATTACTCTTTTGTTTTTCAGGTGGAATTAAGTGACAAGGCAAAGCTAATGTAAGATACATAAAACACCAAAAACACCAAGCATTCTGCCGTGAACCCATTTGGTGCTCAATAAAATCATTGCCCTTTTTTTGGTGTTTTGTTGGAGACAAAACGGAAACACCAAATGGCTGGTGGAAGTGGTAGGAAAAAAGGAGACCAAAAACCCAGTGGCTCTGAAGAGGTACCTGCAGACCCACTGGGCAGGGTAGAGAGGAGCCCAGTGGGAACTTTTCTGCCAGGAGGAATCAGCGGGCAGAGCTCTTCTTCCCATTTGTCCAGcagggcttctcatcctcagcactgctgacatttgcgccagatatttctttgttttggaggctgtcctgtgcactgtcggatgt------ttagcagcatcgtcagcctctactctccaggtgaagtagcaagttgtctgcct-cccgcagttatgacaatcagaatgtcCTG-GTGGAGG
  677. i hg18.chr22 C 0 C 0
  678. s rheMac2.chr10 61921792 490 + 94855758 actactcctttgtttttcaggtgaaattaagtgacaaggcaaagctaatgtaagatacataaaacaCCGAAAACGCTGAGCATTCTGCCGGGAACCCATTTGGTGCTCCATAAAATCATTGCCCTTGTTTTGGTATTTTGTTGGAGACGAAATGGAAACACCAAATGGCTGGTGGAAGTGACAGGAGAAAACAAGACCAAAAACCCAATGGCTCTGAAGAGGTACCTGCAGACCCACTGGGCAGGGTAGAGAGGAGCCCAGTGGGAACTTTTCTGCCAGGAGGAAACGGTGGGCAGAGCTCTTCTTCCCACTTGTCTAGcagggtttctcatcctcggcaccgctgaca-ttgcgccagatatttctttgctttggaggctgtcctgtgcactgtaggatgt------ttagcagaattcccagtgtctactctccagatggagtagcaagttgtctgcct-cccccagttacgacaatcagaatgtcccG-ATGGAGG
  679. i rheMac2.chr10 C 0 C 0
  680. s calJac1.Contig13114 19965 485 + 38599 GTTCCTCTTCTGTTTTTCAGGTGAAATTAAGTGACAGG-----GCTAAGGTAAGATACATGAAACAGCAAC---------CATTCTGCTGGGACTCCATTTGGTGCTCAATAAAATCATTCGCCTTTTTTTGGTCTTTTGTTGCAGACGAAATGGAAACACCAAATGGCTGGTGGAAGTGGCACGAATAAACGAGACCAAAAACCCTGTGGCTCTGAGGAGTCACCTGCAGACCCACTGGGCAGGGCAGAAAGGCGTCCGGGGGGAAGTTTCCTGCCAGGAGGGATCAGTGGGCAGGTCTCTCCTTCCCACTTGTTCAGcagggtttctcctcctcggcaccactgacatttgggccaggtatttctttgatctggcggctgtcctgtgcactggagggggcagggggttagcaatgtccccagcctctactctccaggtgaagtggcaagctgtccgcctccccccagtgatgacaatcagaatgtcCTgcgtggtgg
  681. i calJac1.Contig13114 I 244 I 599
  682. a score=450047.0
  683. s ponAbe2.chr22 13842141 668 + 46535552 CCTTTCTCACAAACAAGAGATGCCT-----GAGA---AAGACCTGGTCATGTGGCAGGTGGTGAGTGGCTACTGGAAGAAATATGGTGGCTGGGGGAGAGGCAAGGGAGAAGCGGTGCCTGCAGTTGAGCAGGCTGGCTGGAGAGCCAAGGCCAGTGCCCACAAGTGACTCCCCCGAGGGGTGTTGCCTTGGTGGGCTTCCCCGCTCTGGCCTTTTTTCACCTTGTTTGCTGAATCCAGGTAAAATTTTTAACTAAATTGGAAAGCAATTCCGGGTAGTGAGAGTCAGATCTGTCGCTGCCCTTGctgttgctaatgagctgtatgaccttagttgagccatttgatctctctgcaactgtttcttgggctgtgaaacgtgggggttggagtctctgatttctaaggtccttttcagctgtaagttctaAGGCCTGTGAATACCACATTGTGATTAAGCCAGCTGGGTGGTGGTGAGGGCCTTGTAAGTTTCGGTCT-----CACTGCAAGCCTGCGATAGAATTCTCCACATGTCTTT-------------------------------------------------------------------------------------------GTT----------------------------------------------------------------AAGAACTCTT--ggccgggcacagtggctcatacctgtaatcccagcattttgggaggccgaggcaggtggatcacctgaggtcaggagtttgagaccagcctggccaagatagtgaaaccctgtctctact-------aaaaatacg
  684. s panTro2.chr22 16138858 667 + 50165558 CCTTTCCCACAAACAAGAGATGCCT-----GAGA---AAGACCTGGTCATGCAGGAGGTGGTGAGTGGCTACTGGAAGAAATATGGTGGCTGGGGGAGGGGCAAGGGAGAAGC-CTGCCTGCGGTTGAGCAGGCTAGCTGGAGAGCCAAGGTCGGTGCCCACTAGTGACTCTCCCGAGGGGTGTTGCCTTGGTGGGCTTCCCCGCTCTGGCCTTTTGTCACCTTGTTTGCTGAATCCAggtaaaatgtttaaccaaattggaaagcaattccggggagttggagtcagatctgtccctgcccttgctgttgctaatgagctgtatgaccttagttgagccatttgatctctctgcaactgtttcttgggctgtgaaacatgggggttggagtctctgatttctaagatccttttcagctgtaagttctaAGGCCTGTGAATACCACAGTGTGATTAAGCCAACTGGGTGGTGGTGAGGGCCTTGTAAGTTTCAGTCT-----TACTGCAAGCCAGCGATAGAATTCTCCACATGTCTTT-------------------------------------------------------------------------------------------GTT----------------------------------------------------------------AAGAACTCTT--ggcccggcacagtggctcatgcctgtaatcccagcattttgggaggccgaggcaggtggatcacctgaggtcaggagtttgagaccagcctggccaagatggtgaaaccccgtctctact-------aaaaataca
  685. i panTro2.chr22 C 0 C 0
  686. s hg18.chr22 16122069 667 + 49691432 CCTTTCCCACAAACAAGAGATGCCT-----GAGA---AAGACCTGGTCATGCAGGAGGTGGTGAGTGGCTACTGGAAGAAATATGGTGGCTGGGGGAGGGGCAAGGGAGAAGT-CTGCCTGCGGTTGAGCAGGCTGGCTGGAGAGCCAAGGCCAGTGCCCACTAGTGACTCTCCCGAGGGGTGTTGCCTTGGTGGGCTTCCCCGCTCTGGCCTTTTGTCACCTTGTTTGCTGAATCCAGGTAAAATTTTTGACCAAATTGGAAAGCAATTCCGGggagttggagtcagatctgtccctacccttgctgttgctaatgagctgtatgaccttagttgagccatttgatctctctgcaactgtttcttgggctgtgaaacatgggggttggagtctctgatttctaaggtccttttcagctgtaagttctaAGGCCTGTGAATACCACAGTGTGATGAAGCCAACTGGGTGGTGGTGAGGGCCTTGTAAGTTTCAGTCT-----TACTGCAAGCCGGCGATAGAATTCTCCCCATGTCTTT-------------------------------------------------------------------------------------------GTT----------------------------------------------------------------AAGAACTCTT--ggccgggcacagtggctcatgcctgtaatcccagcattttgggaggccgaggcaggtggatcacctgaggtcaggagtttgagaccagcctagccaagatggtgaaaccccgtctctact-------aaaaataca
  687. i hg18.chr22 C 0 C 0
  688. s rheMac2.chr10 61922407 669 + 94855758 CGTTTCTTACAAACAAGAGATGCCT-----GAGAAGGAAGACCTGGTCACACAGGAGGTGATGAGTGGCTACGGGAAGAAATATGGTGGCTGGGGGAGGGGCGAGGGAGAAGC---ACCTGCAGTAGAGCAGGCTGGCTGGAGAG-CAAGGCCACTGCCCACTAGTGACTCCCCC-AAGGGTGCTGCCTTGGTGGGCTTCCCCACTCTGGCCTTTTGTCACCTTGTTTGCTGAATCCAGGTAAATTTTTTCATCAAATTGGAAAGCAATTCCGGGTAGtgggagtcagatgtgtccctgcccttgctgttgctaatgagccgtatgaccttagctgagccatttgatctctccgcaactgttcctcgggctgtgaaacgtgagggttggagtctctgagttctaaggtccttttcggctgtaagttctaAGGCCTGTGAATACCACAGTGTGATTAAGCCAGCTAGGTGGTGGTGAGGGCCTTGTAAGTTTGGGTCTCACTGCACTGCAAGCCAGCGGTAGA---------ATGTCTTT-------------------------------------------------------------------------------------------GTT----------------------------------------------------------------AAGAACTCTTGGggccgggcgcggtggctcaagcctgtaatcccagcactttgggaggccgagacgggcggatcac--gaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctactaaaaaaaaaaaataca
  689. i rheMac2.chr10 C 0 I 519
  690. s calJac1.Contig13114 21049 803 + 38599 CCCTTTTC-CAAACGA-AGATGCCTTGAGAAAGA---AAGAGCTGGTCATGCAGGAGGTGGAGAGTGGCTG--------------------AGGGAAGGGGCGA-GGAGAAGC-AGTGCTGAGGTCCAGCAGGCTGGCTGGAGAAGCCAGGCCGGTACCCACCAGTGACTC-CGTGAGTGGCGCTGCTGTGGT-GGCTTCCCCGCTCTGGAA-TCTGTCACCTCGTTTGCTGAATGCAGGTGAATTTCTGAATCAAACtggaaagaa--tgcaggtggaaggagtcagatc-ggccatgcccttgctgttgctactgagccgcgtgaccttaactgagccatgtgatctctctgcaactgtttcttgggctgtgaagcgtgggggctgcagtctctgagccttaaggtccctttcagctgtaagttctaGGGCCTGTGAATACCACGGTGTCATTAGACTACCTGGGTGCTGGTCAGGACCTTGTAAGTTTTGCTCTCACTGCACTGCAAGCCAGAAGTACAGTTCTCCTCATGTGTTTAAGAACTCTTGGCCCAggctggccgtggtggctcacgcctgtaatccaagcactttggaggccaaggcgggcggatcacctgaggttgggagttcaagaccaggcttgccaacacggtgaaaccccgtctttaaaaaaataaaattaAAATTAAAAAAAAGAACTCTT--ggcccagcacaatggctcatacctataatcccagcacttcgagaggctgagacaggtggatcacctgaggtcaggagttcaagaccagcctgaccaacgaggtgaaatgctgtctctact-------aaaaataca
  691. i calJac1.Contig13114 I 599 C 0
  692. a score=170311.0
  693. s ponAbe2.chr22 13842809 244 + 46535552 aaaattagctgggcgtggtggctagcacctgtaatcccagctactcaagaggctgaggcaggagaatcatttgaacccaggaggtgaaggttgcagtaagccga----gatcgcgccactacgctctaacctgggcgacaagagcaagactttatct-------------------------------------aaaaaaaaaaaaaaaaagaaCCCTTGTTGCTGAGAAATACTTCAGGAGTTCCTACCGCGTGCGACGCAATGTGCTCTCTGCTGTGCATGTG--
  694. s calJac1.Contig13114 21852 241 + 38599 aaaattagatgggcatggtggcacatgcctgtaatcccagctactcaggaggctgaggcaggaaaatcgcttgaacccaggagacagagattgcagtgagccaa----gatggctccactgcactccaccctgggtgac-agagtgagacttcgtct-----------------------------------------gaaaaaaaaaaaagaaCTCTTGTTGCTGAGAACTACTTCAGgagttcctactgtgtgcaaagcaatgtgctctctgctatgcacatgga
  695. i calJac1.Contig13114 C 0 C 0
  696. s rheMac2.chr10 61923595 284 + 94855758 aaaattagccgggcgtggtggtgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgatcgcatcactgcactccagcctgggcaac-agagagagactccgtctcaacaaaaaaaaaagaaaaaaagaaaaaaCAAGAAAAACAAAAACAAAAGAAAAGAACTCTTATTGCTGAGACATACTTCAGGGGTTCCTGCTGTGTGCAAAGCAATATGCTCTCTGCTGTGCGTGTG--
  697. i rheMac2.chr10 I 519 C 0
  698. s hg18.chr22 16122736 239 + 49691432 aaaactagctgggcgtggtggctagcgcctgtaatcccagctactcgggaggctgaggcaggagaatcatttgaacccaggagacggaggttgcagtgagccga----gattgcgccactacactctaacctgggcgacaagagcaagacttcgtct------------------------------------------aaaaaaaaaaaagaaCTCTTGTTGCTGAGAAATACTTCAGGAGTTCCTACTGTGTGCGAAGCAACGTGCTCTCTGCTGTGCATGTG--
  699. i hg18.chr22 C 0 C 0
  700. s panTro2.chr22 16139525 240 + 50165558 aaaattagctgggcgtggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcatttgaacccaggagacggaggttgcagtgagccgg----gattgcgccactacactctaacctgggcgacaagagcaagactttgtct-----------------------------------------aaaaaaaaaaaaagaaCTCTTGTTGCTGAGAAATACTTCCGGAGTTCCTACTGTGTGCGAAGCAACGTGCTCTCTGCTGTGCATGTG--
  701. i panTro2.chr22 C 0 C 0
  702. a score=206108.0
  703. s ponAbe2.chr22 13843053 237 + 46535552 GGGAGGTCTTTCCCCCTTTCTTCTGAGGGCTCATAATCTAATAACAGATAAAAATAATTCCAATAAAAGGCCATAAATGCAAAACGTCTCATCCTTTCCAATggcttcaaagtcaggaagatctgagtttgaggctaggtccaccattaggagtccttgggttact-cggctcatttaatctcagtttctttacttgtaaaatgggcataataacaactgtgtcacagggttatttta
  704. s panTro2.chr22 16139765 237 + 50165558 GGGAGGTCTTTCCCCCTTTCCTCTGAGGGCTCATAATCTAATAACAGATCAAAATAATTCCAATAAAAGGCCATAAATGCAAAATGTCTCATCCTTTCcactggcttcaaagtcaggaagatctgagtttgaggctaggtccaccattaggagtccttgggttact-cagctcatttaatctcagtttctttacttgtaaaatgggcataataacaactgtgtcacagggttatttta
  705. i panTro2.chr22 C 0 C 0
  706. s hg18.chr22 16122975 237 + 49691432 GGGAGGTCTTTCCCCCTTTCCTCTGAGGGCTCATAATCTAATAACAGATAAAAATAATTCCAATAAAAGGCCATAAATGCAAAATGTCTCATCCTTTCcaccggcttcaaagtcaggaagatctgagtttgaggctaggtccaccattaggagtccttgggttact-cggctcatttaatctcagtttctttacctgtaaaatggtcataataacaactgtgtcacagggttatttta
  707. i hg18.chr22 C 0 C 0
  708. s rheMac2.chr10 61923879 236 + 94855758 GAGAGGTCTTTCCCCCTTTCCTTTGAGGGCTCAGAATCTAGTAACAGATAACAATAATTTCAATAAAAGGCCATACATGC-AAATGTCTCATCCTTTCcaagggcttcaaagtcaggaagatctgggtttgaggctgggtccaccactctgagtccttgggttact-tggctcatttaatctcagtttctttacttgtaaaatgggcataacaacaactatgtcacagggttatttta
  709. i rheMac2.chr10 C 0 C 0
  710. s calJac1.Contig13114 22093 236 + 38599 gagagatcttcgcccctttcctttgagagctaataatctagtaacagataaaaataATTCCAACAAAAGGCCGTAAATGCAAAATGTCTCATCCTTTCCAatgggctcaaaatcaggcagatctgagtctgaggctaggttcattgtcatgagttctt-ggttactgtggctcatttaatctcagttt-tttacttgtaaaatgggcgtaacaacaactacgtcacagggttatttta
  711. i calJac1.Contig13114 C 0 I 148
  712. a score=140778.0
  713. s ponAbe2.chr22 13843290 154 + 46535552 agagttaaatgagataatatatgggctgggcgcagtggctcatgcctgtaatcccagcactttgggaggccaaggcgggtggatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatct-ctactaaaaatat-aaaaa
  714. s panTro2.chr22 16140002 154 + 50165558 agagttaaatgagataatatatgggctgggtgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggtggatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatct-ctactaaaaatac-aaaaa
  715. i panTro2.chr22 C 0 C 0
  716. s hg18.chr22 16123212 154 + 49691432 agagttaaatgagattatatatgggctgggtgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggtggatcacgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccatct-ctactaaaaatac-aaaaa
  717. i hg18.chr22 C 0 C 0
  718. s rheMac2.chr10 61924115 155 + 94855758 agagttaaatgagataatatatgggccgggcgcgagagttcacgcctgtaatcccagcactttgtgaggccgaggcgggcagatcacgaggtcaggagttcgagaccatcctggctaacacggtgaaaccccgtct-ctactaaaaatataaaaaa
  719. i rheMac2.chr10 C 0 C 0
  720. s calJac1.Contig13114 22477 153 + 38599 AGAGTTAAATGAGACAATATATGGGCTGGGTGCCCTTAT--ATTcctgtaatcccagcactttgggaggctgaggggggcagatcatgaggtcaggagtttcagaccagcctggccaacatggcaaaaccccatctcctactaaaaatac-aaaaa
  721. i calJac1.Contig13114 I 148 C 0
  722. a score=535351.0
  723. s ponAbe2.chr22 13843444 703 + 46535552 ttagccaggcatggtggtgcacgcctgtaatcccagctactc--------------agagaactgcttgaacctgggaggcggagatttcagtgagccaagattgcgccactgtgctccagactgggcgacagagcaagactccatctcaggg-ggaaaaaaaaaaaGAGTTAAATGggccgggtgcaatggttcacacctgtattcccagcactttgggaggccaaggtgtgcaaatcacttgaggtcaggagttcaagaccagcctggccgatgcagcgaaactcagtctctaccaaaaatacaaaaagtaaccgggcatggtggtgcacacctgtaatcccagctacttgggaggctgaggcaggagagttgcttgaacccaggaggaagaggttgcagtgagctccagcctgggcaatagagtgagaccctgccacaaggaaaaaagaaaagataatatttgtaagacaattaccatggtgcttggcacatcattaagtgc-aaaataattgttagTGGcaagtatttattggctacagtgcagcaggcactgtgctaggccctgggatagtggagatgagggacaggactcctggtctggagcaactcaccagcaggtagggaaagaagcagggagcaatgacagtaccccgagagggccgtgacagagccaggtaggagaggcatcgacacggggagggcagcaggccctgac
  724. s panTro2.chr22 16140156 703 + 50165558 ttagccaggcgtggtggtgcacgcctgtaatcccagctactc--------------agagaactgcttgaacccgggaggcggagatttcagtgagccaagattgcgccactgcgctccagcctgggcgacagagcaagactccatctcaggg-gaaaaagaaaaaagaGTTAAATGggcctggtgcaatggttcacacctgtaatcccagcactttgggaggccaaggcgggcagatcacttgaggtcaggagttggagaccagcctggccgacgcagcgaaactcagtctctatcaaaaatacaaaaagtaacagggcttggtggtgcacacctgtaatcccagctacttgggaggctgaggcaagagagttgcttgaacccaggaggaagaggttgcagtgagctccggcctgggcaatagagtgagaccctgccacaaggaaaaaagaaaagataatatttgtaagacaattaccatggtggttgtcacatcattaagtgc-aaaataattgttagTGGcaagtatttattggctatagtgcagcaggcactgtgctaggccctgggatagtggagatgagagacaggactcctggtctgcagcaactcaccagcaggtagggaaagaagcagggagcaatgacagtaccctgagagggccgtgacagagccaggtaggagaggcatcgacacggggagggcagcgggccctgac
  725. i panTro2.chr22 C 0 C 0
  726. s hg18.chr22 16123366 703 + 49691432 ttagccaggcgtggtggtgcacgcctgtaatcccagctactc--------------agagtactgcttgaacttgggaggcggagatttcagtgagccaagattgcgccactgcgctccagcctgggcgacagagcaagactccatctcaggg-gaaaaagaaaaaaGAGTTAAATGggcctggtgcaatggttcacacctgtaatcccagtactttgggaggccaaggcgggcagatcacttgaggtcaggagttggagaccagcctggccaacgcagcgaaactcagtctctatcaaaaatacaaaaagtaacagggcttggtggtgcacacctgtaatcccagctacttgggaggctgaggcaagagagttgcttgaacccaggaggaagaggttgcagtgagctctggcctgggcaatagagtgagaccctgccacaaggaaaaaagaaaagataatatttgtaagacaattaccatggtggttgtcacatcattaagtgc-aaaataattgttagTGGcaagtatttattggctatagtgcagcaggcactgtgctaggccctgagatagtggagatgagggacaggactcctggtctGCAGCAACTCACCAGCAGGTAGGGAAAGAAGCAGGGAGCAATGACAGTACCCTGAGAGGGCCGTGACAGAGCCAGGTGGGAGAGGCATCGACACGGGGAGGGCAGCAGGCGCTGAC
  727. i hg18.chr22 C 0 C 0
  728. s rheMac2.chr10 61924270 717 + 94855758 ttagccaggcgtggtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatcacgccgctgcactccagcctgggcgacagagcgagactccatctgggggaaaaaaaaaaaaaagagtaaaaTGggctggttgcaatggttcacacctgtaatcccagcattttggaaggccaaggcaggcagatcacttgaggtcgggaggttcagaccagcttagccaacgcagtgaaactcagtctctaccaaaaatacaaaaagtaaccgggcatggtggtgcacacctgtaatcccagccacttgcgaggctgaggcaggagagttgcttgaacccgggaggaagaagttgcagtgagctctggcctgagcaatagagtgagaccctgccacaaggaaaaaagaaaagacaatgtttgtaagacaattaccatggtgcttggcacatcattaagtgc-aaaataattgttagTGGcaaatatttattggctacagtgcagcaggcactgtgctaggccctgggatagtggagatgagggacaggactcctgGTAGGGAGCAACTCACCAGCAGGTAGGGAAAGAAGCAGGGAGCAACGACAGTACCCTGAGAGGGCCGTGATGGAGCCAGGTAGGAGAGGCATTGACACAGGGAGGGCAGCAGGCCCTGA-
  729. i rheMac2.chr10 C 0 I 1
  730. s calJac1.Contig13114 22630 653 + 38599 ttagctgtgtgtagtggctcgcacctgtaatcccagctactc--------------ggagaactgcttgaacccaggaggcggaggttgcagtgagccaagatcatgctactgcactccagcctgggtgacacagcaagact--------GGG-------------AGAGTTAAAAGggttgggtgtgatagttcacgcctataatcccagcagtttgggaggctgagg---gtagattacttgaggtcagtagttcgagaccagcctgaccaacatggtgaaactcagtctctaccaaaaatacaaaaagtagccaggcgtggtggtggacacctgtaatcccagctacttgggagactgaggcaggagagtcacttgcacctgggaggcagaggttgcagtgagctccagcctgggccacagagtgagacCC--------------------------TATTTGTAGAACAATTACCATGGTGCTTGGCACATCATTAAGTGCAAAAATAATTGTT-GTGGcaaatatttattagctacagtgcagcaggcgctgtgctaggccctgggATAGCGGAGATGAGGGACAGGACTCTTGGTTTGGAGCGACTCACCAGCAGGTAGGGAAAGCAGCAGGGAGCAATGACAGGACCCTGACCGCACTGCGACAGAGCCAGGCAGGAGAAGCTTTGACACGGGGAAGGCGGCA-GCCCTGAC
  731. i calJac1.Contig13114 C 0 C 0
  732. a score=30445.0
  733. s ponAbe2.chr22 13844147 40 + 46535552 tgtggggtcaggcaggCATGTGAAGTAGTGACCACACTGC
  734. s calJac1.Contig13114 23283 40 + 38599 TGCTGGGTAAGGCAGGCATGTGAAGCAGTGAACACGCTGC
  735. i calJac1.Contig13114 C 0 C 0
  736. s rheMac2.chr10 61924988 40 + 94855758 TGCGGGGTCAAGCAGGCATGTGAAGTAGTGACCTCACTGC
  737. i rheMac2.chr10 I 1 C 0
  738. s hg18.chr22 16124069 40 + 49691432 TGCGGGCTCAGGCAGGCATGTGAAGTAGTGACCGCACTGC
  739. i hg18.chr22 C 0 C 0
  740. s panTro2.chr22 16140859 40 + 50165558 tgcgggctcaggCAGGCATGTGATGTAGTGACCGCACTGC
  741. i panTro2.chr22 C 0 C 0
  742. a score=258534.0
  743. s ponAbe2.chr22 13844187 267 + 46535552 CTGTTGAAGCAGGGCCAGTGGCATTCACCGGAGTTAAGCAGACAGAGCAGTGGGGAGGTGGGAGAAGCTCAGGTGCCAATGAGCCCGACCCTCAGTGCTTCTGCAGAACTGAATGCAGTCAAGCAAGGTGGAGTGTGCATGGGATGATGGTGAGAAATGAGCCTGAAGGTTGGCGTCAGAAAGAAGGGACGTACACAAGAAGTGTTTCCTTTATATTAGACACACtatttccctttttgacctaaccactaggcagctcggaaccaa
  744. s panTro2.chr22 16140899 267 + 50165558 CTGTTGAAGCAGGGCCAGTGGTGTTCACCGGAGTTAAGCAGACAGAGCAGTGGGGAGGTGGGAGAAGCTCAGGTGCCATTGAGCCCGACCCTCAGTGCTTCTGCAGAAGTGAATGCAGTCAAGCAAGGTGGAGTGTGCATGGGATGATGGTAAGAAATGAGCCTGAAGGTTGGCGTCAGAAAGAAGGGATGTACACAAGAAATGTTTCCTTTATATTAGACACACtatttccctttttgacctaaccaccaggcagctcggaaccaa
  745. i panTro2.chr22 C 0 C 0
  746. s hg18.chr22 16124109 267 + 49691432 CTGTTGAAGCAGGGCCAGTGGTGTTCACCGGAGTTAAGCAGACAGAGCAGTGGGGAGGTGGGAGAAGCTCAGGTGCCAATGAGCCCGACCCTCAGTGCTTCTGCAGAAGTGAATGCAGTCAAGCAAGGTGGAGTGTGCATGGGATGATGGTAAGAAATGAGCCTGAAGGTTGGCGTCAGAAAGAAGGGACGTACACAAGAAATGTTTCCTTTATATTAGACACACtatttccctttttgacctaaccaccaggcagctcggaaccaa
  747. i hg18.chr22 C 0 C 0
  748. s rheMac2.chr10 61925028 267 + 94855758 TGGTTGAAGCAGGGCCAGTGGTGTTCCCCGGAGTTAAGCAGACAGAGCAGTGGGGAGGTGGGAGAAGCTCAGGTGCCAATGAGCCCGGCCCTCAGTGATTCTGCAGAACTGAATGCAGTCAAGCAAGGTGGAGTGTGCATGGGATGATGGTGAGAAATGAGCCTGAAGGTTGGTGTCAGAAAGAAGGGACATACACAAGAAATGTTTCCTTTTTGTTGGACACACtatttccctttttgacctaaccaccaggcagctcggaaccaa
  749. i rheMac2.chr10 C 0 C 0
  750. s calJac1.Contig13114 23323 267 + 38599 CCGTTGAAGCAAGGTCCGTGGTGTTGACCGGAGTTAAGCAGACAGGGCTGCAGGGAGGTGGGAGTAGCCGAGGTGCCATCAAGCCCAGGCCACAGTGCTCCTGCAGAACTGAATGCACTCAAGCAAGGCGGAGTGTCTGTGGGATGATGGTGAGAAATGAGCCTGAATGTTGGCCTCAGAAAGAAGGGACCTACACAAGAAATGTTTCCTTTTTATTGGACACACtatttcccccttcgacctaactgccaggcagctcagaaccaa
  751. i calJac1.Contig13114 C 0 I 439
  752. a score=324159.0
  753. s ponAbe2.chr22 13844454 399 + 46535552 gttttaggttcaaatgttgcagcACTTCCTT-----------------------------------------------------------GAATCCTGCTTTTCTGATGGAATTATTCCTTAGCCCCAGCTTTCTCTAGACCCTGGACCTCAACCTTTAATCTGGTTTTGGGGTTTCTGGCACTTGTGCCACTAATGATAAACTGCCTTGAATCTTTTTGGATACACTGAACATACATGGTGTGTAAATAAATAAATGAACTATAAAATACAAACATGCACAGGTAAGAGTGAAGTCAGAGCCCTTAGAGTGCGCTACACCAGGGC------------------------GGCAGCATCCCTGGTGCCCGGTCAGCGCCTGGCACATCATAGGAGCGCAATCAACAGCGGGTGACACAGAATGACGGCAGAGAACATTTCACCTAAAAGAAGGCTTCTCCACAGAGCACACCAGGACGGACC
  754. s panTro2.chr22 16141166 399 + 50165558 cttttaggttcaaatgttgcagcacttcctt-----------------------------------------------------------gaatcctacttttctgatggacttattccttagccccagctttctctagaccctggatctcaacctttaatctggttttggggtttctggcacttgtgccattaatgataaactgccttgaatctttttggatacactgaacatacatggtgtgtaaataaacaaaTGAACTATAAAATACAAACATGCACAGGTAAGAGTGAAGTCAGAGCCTTTAGAGTGCGCTACGCCAGGGC------------------------GgcagcatccctggtgcccggtcagcgcctggcacatcataggagcgcaatcaacaGCGGGTGACACAGAATGGCGGCAGAGAACATTTCACCTAAAAGAAGGCTTCTCCACAGAGCACACCAGGACGGACC
  755. i panTro2.chr22 C 0 C 0
  756. s hg18.chr22 16124376 399 + 49691432 cttttaggttcaaatgttgcagcacttcctt-----------------------------------------------------------gaatcctacttttctgatgggcttattccttagccccagctttctctagaccctggatctcaacctttaatctggttttggggtttctggcacttgtgccattaatgataaactgccttgaatctttttggatacactgaacatatgtggtgtgtaaataaacaaaTGAACTATAAAATACAAACATGCACAGATAAGAGTGAAGTCAGAGCCTTTAGAGTGCGCTACGCCAGGGC------------------------GgcagcatccctggtgcccggtcagcgcctggcacatcataggagcgcaatcaacaGCGGGTGACACAGAATGGCGGCAGAGAACATTTCACCTAAAAGAAGGCTTCTCCACAGAGCACACCAGGACGGACC
  757. i hg18.chr22 C 0 C 0
  758. s rheMac2.chr10 61925295 420 + 94855758 gttttaggttcaaATGTCGAAGCACTTCCTT-----------------------------------------------------------GAATCCAGCTTTTCTGATGGAATTATTCTTTAGCCCCAGCTTTCTCTAGACCCTGGACCTCAACCTTTAATCTGGTTTTGGGGTTTCTGGCACTTGTGGCATTAATTATAAACGGACTTGAATCTTTCTGAATACACTGAACACACACGGTGTGTAAATAAATAAATGAACTATAAAATACAAACATGCACA-ATAAGAGTGAAGTCAGAGcctttagagtgtgctacgtgagggcggcagaaga--ctgtcttgttcctggcagcatccctggtgcccggccagcgcctggcacaccataggagcgcaatcaacaGCGCGTGACACAGAATGACGGCAGAGAACATTTCACCTAAAAGAAACTCTCTCCACAGAACACATCAGGACGggcc
  759. i rheMac2.chr10 C 0 I 514
  760. s calJac1.Contig13114 24029 458 + 38599 TTTTTAGGTTCAAATGTTGCAGCACTTCCCTGAATACAACTTTTCTTTCtttttttttttttttaatttttatatCACACTGGTCCATTAGAATACAACTTTTCTGATGTGATTATTCTCTAGCTCCAGCTTCCTCT--ACCCTGAACCTCAACGTTTAATCTGGTTTGGGGGTTTCTGGCACTTGCGCCATTCATTATGAACTGCCTTGAATCTTTTTAAATATGCTGAACACACATGGTGTGTAAATAAATAAATGAACTATAAAATGCAAACATGCACAGACAAGAGTGAAGCCAGAGCCTTCAGAGCGCGCTACAGCagggcggcagcagagtctggcttgttcctggcagcgtccccagtgcccagtcagtgcctggcaccccacaggagcATGATCAACAGCAGGCGACACAGAATTATGGCAG-GGACACTTCACCTAAAAGAAGCCTCCTCCA---------------------
  761. i calJac1.Contig13114 I 439 I 471
  762. a score=183110.0
  763. s ponAbe2.chr22 13844920 259 + 46535552 CTGATCCTTGTGGCTGAAAGTCTTGTTGCTCCAGCCAGATGGCAAACTATACCTCAAGGACAGACACTTTGTCATATATGCCTGTGTCCCCCAGAGCTGCACCCAGCACAGAGCTGGTCACAAAGTGGCCTCCCCAAATTTCTGTGGCTTTAGCCTAACAAACACC-----TGCAATTCCTCACAGCTGAACAAAGACGAATGACCCTAATCCGTTCAAGTCAGGC--TGGACT-CCTTCCACTCTGATCATACATTTGGTTTTATA
  764. s hg18.chr22 16124844 258 + 49691432 CTGATCCTTGTGGCTGAAAGTCTTGTTGCTCCAGCCAGATGGCAAACTACACCTCAAGGACAGACAC-TTGTCATACATGCCTGTGTCCCCCAGAGCTGCACCCAGCACAGAGCTGGTCACAAAGTGGCCTCCCCAAATTTCTGTGGCTTTAGCCTAACAAACACC-----TGCAATTCCTTATAGCTGAACAAAGATGAATGACCCTAACCCGTTCAAGTCAGGC--TGGACT-CCTTCCACTCTGATCATACATTTGGTTTTACA
  765. i hg18.chr22 C 0 C 0
  766. s panTro2.chr22 16141634 258 + 50165558 CTGATCCTTGTGGCTGAAAGTCTTGTTGCTCCAGCCAGATGGCAAACTACACCTCAAGGACAGACAC-TTGTCATACATGCCTGTGTCCCCCAGAGCTGCACCCAGCACAGAGCTGGTCGCAAAGTGGCCTCCCCAAATTTCTGTGGCTTTAGCCTAACAAACACC-----TGCAATTCCTTATAGCTGAACAAAGATGAATGACCCTAACCCGTTCAAGTCAGGC--TGGACT-CCTTCCACTCTGATCATACATTTGGTTTTACA
  767. i panTro2.chr22 C 0 C 0
  768. s calJac1.Contig13114 24958 259 + 38599 CCAATCCTTGCGGCTGAAAGCCTTATTGCTCCAGCTGGATAGCAAACCACACCTCAAGGACAGATACTCTGTCACACATGCCTGTGTTCCCCAGAGCTGCACCCAGCACAGAGCTGCTCACAAAGTGGCCTCCCCAAATTTCTGTGGCTTTAGCCTGACAAACACC-----CACAA-TCCTCATGGCCGAACAAAGACGAGTGACCCTAACCCATTGGAGTCAGGC--TGGACTAGCTTCCACTCCGGTCACACACCCGCTTTTACA
  769. i calJac1.Contig13114 I 471 C 0
  770. s rheMac2.chr10 61926229 221 + 94855758 -----------GGCTGAAAGTCTTGTTGCTCCAGTGGGATAGCA-----------AAGGAC-GACACTTTGTCATACATGCCTGTGTTC----GAGCTGCA-CCAGCACAGAGCTGGTCACAAAGTGGCCTCCCCAAATTTCTGTGGCTTTAGCCTAACAATTCCTTATAGTGCAATTCCTTATAGCTGAACAAAGACGAACGACCCTAACCCATTCAAGGTAGTCAGTGGACTACCTTCCACTCTGAT------------------
  771. i rheMac2.chr10 I 514 I 355
  772. a score=215562.0
  773. s ponAbe2.chr22 13845179 301 + 46535552 GAGCGCTGAGCGAGAAGAAGAAAGAACGGCCTCTTACTGGCCCGAGTTGAAGGTCTTTGAGCACATTTTTCTCAACAGCATAATCTGGCTCCCTGACACAAAA-GGCAGCGGAGGGAAGGGACAGCGGCTCCTAA-TGAACAGAGATGGATGGTGGCCGGGCCTCTGCCACCACTGCTGTGCCCACTGGGCAGACCAGCCATATCTCCTG-----------------GCTCAGGCCAAAGACTAGGGCAGGTGACACATGGGGTACTCACAGGAGAGCTGTGCTCAGGGCTTCCTGCTGGCCCCGGAACCTTCCAGAATG
  774. s calJac1.Contig13114 25217 314 + 38599 GAGTGCTGAGTGAGAGGAAGAAAGAACGGCCTCTTACCAGCCCAAGGGGAAGGTCTTTGCGCACGTTTTTCTCAACAGCGTAATCTGGTGTCCTGACACAAAAGGGCAGGGGAGAAAAGGGACAGCGGCTCCTAA-TGAACAGAGATGGATGGTGGCCAGGCCTCTGCTACCACTGCTCTGCCCACTGGGCAGACCAGCCATTTCTCCTGGCTCCTATCAAGAGTCAGCTCAGGGCAAAGACTGGGCTGGATGACACATG-----TCCAGAGGAGACCTGTGCTCAGGGCTTCCTTCTGGCCCCGGAACCTTCCCGAGTG
  775. i calJac1.Contig13114 C 0 C 0
  776. s rheMac2.chr10 61926805 318 + 94855758 GAGCACTGAGAGAGAGGAAAAAAGAACAGCCTCTTACTGGCCCGAGTTGAAGGTCTTTGAGCACATTTTTCTCAACAGCATAATCTGGCTCCCTGACACAAAG-GGCAGGGGAGAG-AGGGACAGCAGCTCCTAATTGAACAGAGATGGATGGTGGCCCAGCCTCCACGATCACTGCTGTGTCCACTGGGCAGACCAGCCATGTCTCCTGGCTCCTACCAAGAGTCAGCTCAGGCCAAAGACTAGGGGAGATGACACATGGGGTACTCACAGGAGAGCTGTGCTCAGGACTTCCTGCTGGCCCCAGAACCTTCCAGAATG
  777. i rheMac2.chr10 I 355 C 0
  778. s hg18.chr22 16125102 299 + 49691432 AAGCGCTGAGCGACAGGAAGAAAGAATGG-CTCTTACTGG-CCGAGTTGAAGGGCTTCGAGCACATTTTTCTCAACAGCACAATCTGGCTCCCTGACACAAAA-GGCAGGGAAAGGAAGGGGCAGCGGCTCCCAA-TGAACAGAGACGGATGGCGGCCGGGCCTCTGCCGCCACTGCTGTGCCCACTGGGCAGACCAGCCACATCTCCTG-----------------GCTCAGGCCAAAGACTAGGGCAGATGACACATGGGGTACTCACAGGAGAGCTGTGCTCAGGGCTTCCTGCTGGCCCCGGAACCTTCCAGAATG
  779. i hg18.chr22 C 0 C 0
  780. s panTro2.chr22 16141892 299 + 50165558 AAGCGCTGAGCGACAGGAAGAAAGAATGG-CTCTTACTGG-CCGAGTTGAAGGGCTTCGAGCACATTTTTCTCAACAGCACAATCTGGCTCCCTGACACAAAA-GGCAGGGAAAGGAAGGGGCAGCGGCTCCCAA-TGAACAGAGACGGATGGTGGCCGGGCCTCTGCCGCCACTGCTGTGCCCTCTGGGCAGACCAGCCACATCTCCTG-----------------GCTCAGGCCAAAGACTAGGGCAGATGACACATGGGGTACTCACAGGAGAGCTGTGCTCAGGGCTTCCTGCTGGCCCCGGAACCTTCCAGAATG
  781. i panTro2.chr22 C 0 C 0
  782. a score=302348.0
  783. s ponAbe2.chr22 13845480 371 + 46535552 GCCTCTCACACACTCTCCGCCCTCCCTCCTTCTCTCTTTCTCTCCTGGAACCTTCCAGAGTGGCCTCTCACACACTCCCctccctccctccttctctgtctctctttctctctctctttcAGTGAAAGGACTCCCTTGGCAAGAGTATCGGGTTTCAGTTGTCTGTGTCCTGGGAAATTACAAGATCTTTCCCCTTTCTCTTTTTAGCTAGGATTACACATGCAGAGCCATTTGGCTCCCCTGGCCTGCCCAGCTGCTGCCGGCC-GGGCCGGGGGATCGTGCCAGGCGGCCCAGCCAGAGGTGGGCTGGGTCACAGGGGTGAGCTGCCAGGCCTGCTCACCCCTCTTCTTGGTGTGATCCCCTCAAGTCCA
  784. s panTro2.chr22 16142191 365 + 50165558 GCCTCTCACACACTCcccgccctccctccttctctctgtctctcccggaaccttccagagtggcctctcacacactcccctccctccctccttctctgtc------tctctctcgctctcAGTGAAAGGACTTCCTTGGCAAGAGTGTCAGGTTTCAGTTGTCTGTGTCCCGGGAAATTACAAGATCTTTCCCCTTTCTCTTTTTAGCTAGGATTACACATGCGGAGCCATTTGGCTCCCCTGGCCTGCGCAGCTGCTGCCGGCC-GGGCCGGGGGATCGTGCCAGGCAGCCCAGCCAGAGGTGGGCTGGGTCACAGGGGTGAGCTGCCAGGCCTGCTCACCCCTCTTCTTGGTGTGATCCCCTCAAGTCCA
  785. i panTro2.chr22 C 0 C 0
  786. s hg18.chr22 16125401 365 + 49691432 GCCTCTCACACACTCCCCGCCCTCCCTCCTTCTCTCTGTCTCTCCCGGAACCTTCCAGAGTGGGCTCTCACACACTCCCctccctccctccttctctgtc------tctctctctctctcAGTGAAAGGACTTCCTTGGCAAGAGTGTCAGGTTTCAGTTGTCTGTGTCCTGGGAAATTACAAGATCTTTCCCCTTTCTCTTTTTAGCTAGGATTACACATGCAGAGCCATTTGGCTCCCCTGGCCTGCGCAGCTGCTGCCGGCC-GGGCCGGGGGATCATGCCAGGCAGCCCAGCCAGAGGTGAGCTGGGTCACAGGGGTGAGCTGCCAGGCCTGCTCACCCCTCTTCTTGGTGTGATCCCCTCAAGTCCA
  787. i hg18.chr22 C 0 C 0
  788. s rheMac2.chr10 61927123 320 + 94855758 GCCTCTCACACACTCCCctccctccctccttctctctctctc--------------------------------------------------tctctgtc--tctttctctctctctctcAGTGAAAGGACTGCCTTAGCAAGAGTATCAGGTTTCAGTTGTCTGTGTCCTGGGAAATTACAAGATCTTTCCCCTTTCTCTTTTTAGCTGGGATTACACATGCAGAGCCATTTGGCTCCCCTGTCCTGCCCGGCTGCTGCCGGCTGGGGCTGGGGGATCGTGCCAGGCGGCCCAGCCAGAGGTGGGCAGGGTCACAGGGGTGAGCTGCCAGGCCTGCTCACCCCTCTTCTTGGTGTGATCCCCTCAAATCCA
  789. i rheMac2.chr10 C 0 C 0
  790. s calJac1.Contig13114 25531 289 + 38599 GCCTCTCACGCACTCccctccctccctccttccctctcttcc----------------------------------------------------------------cctcacccccccACAGTGAAAGGACT-CCTTGGCAAAAGTATCAGGTTTCAGTTATCTGTGTCCTGGGAAATTACAAGGTCTTTCCCCTTTCTCTTTTTAGCCGGGATTACACAAGCAGAG-----------------CCTGCCCAGCTGCTGTCACCC-AGGCCAGGGGATCACGCCAGGCGACCCAGCTAGAGGTGGGCAGGGTCACAGAGTCCAGCTGCCAGGCCTGCTCACCCCTCTTCTTGGTGTGATCCCCTCAAGTCCA
  791. i calJac1.Contig13114 C 0 C 0
  792. a score=49714.0
  793. s ponAbe2.chr22 13845851 55 + 46535552 ATCCCCAGGGACCTTCCCCGGGAATGCTGAGAGCACCAGCTGTCCCGGCCATGTC
  794. s calJac1.Contig13114 25820 55 + 38599 ATTCCCAGGGACCTTCCCCAGGCATGCTGAGGGCACAGGCTGTCCCCACCACGTC
  795. i calJac1.Contig13114 C 0 C 0
  796. s rheMac2.chr10 61927443 55 + 94855758 ATCCCCAGGGACCTTCCCCAGGCATGTGGAGAGCACCAGCTGTCCCGGCCACATC
  797. i rheMac2.chr10 C 0 C 0
  798. s hg18.chr22 16125766 55 + 49691432 ATCCCCAGGGACCTTCCCCAGGAATGCTGAGAGCACCAGCTGTCCCGGCCATGTC
  799. i hg18.chr22 C 0 C 0
  800. s panTro2.chr22 16142556 55 + 50165558 ATCCCCAGGGACCTTCCCCAGGAATGCTGAGAGCACCAGCTGTCCCGGCCATGTC
  801. i panTro2.chr22 C 0 C 0
  802. a score=117639.0
  803. s ponAbe2.chr22 13845906 128 + 46535552 AGGCATCTGGCCACCAGGTCTCTTTCCACTCCAGGGGCAACCACCGCCAGAGGGAAAAACGGAAACACCAGGTTATTTGTGATCTGCCTACTCACTCCTCATTTAGAGAGAGAAGCAGGAGGCCAGGG
  804. s panTro2.chr22 16142611 128 + 50165558 AGGCATCTGGCCACCAGGTCTCCTTCCACTCCAGGGGCAACCACCGCCAGAGGGAAAAACGGAAACACCAGGTTATTTGTGATCTGCATACTCACTCCGCGTTTAGAGAGAGAAGCAGGAGGCCAGGC
  805. i panTro2.chr22 C 0 C 0
  806. s hg18.chr22 16125821 128 + 49691432 AGGCATCTGGCCACCAGGTCTCCTTCCACTCCAGGGGCAACCACCGCCAGAGGGAAAAACGGAAACACCAGGTTATTTGTGATCTGCATACTCACTCCTCGTTTAGAGAGACAAGCAGGAGGCCAGGG
  807. i hg18.chr22 C 0 C 0
  808. s rheMac2.chr10 61927498 128 + 94855758 AGGCATCTGGCCACCAGGTCTCCTTCCACTCCAGGAGCAACCACTGCCAGAGGGAAAAACGGAAACACCAGGTTATTTGTGATCTGACTACTCACTCTTCGTTGAGAGAGAGAAGCAGGAGGCCAGGG
  809. i rheMac2.chr10 C 0 C 0
  810. s calJac1.Contig13114 25875 128 + 38599 AGGCATCTGGCCCCCAGGTCTCCTTCCCCTCCAGGGGCAGCCACCATCAGAGGGAAAAATGGAAACACCAGGTTATTTGCGATCTGACTACTCACTCCTCATTTCGAGAGACAAGCAGGAGGCCAGGG
  811. i calJac1.Contig13114 C 0 C 0
  812. a score=250324.0
  813. s ponAbe2.chr22 13846034 347 + 46535552 GAATAGATGGGACTGTGGGAACAGCCGAGGGCAGAGGGTGAAGGGTGGCGATCAGAAGGAAAGACGGAATGCCCACACATTCCCTGCCGCTCTGGGCT---------------------------------------------------CCAGCCGT---GGAGGAAGCGGGGCTCAGAGGACATT---------GCACCAGACAGGTCT------------------------TGTTTAGAAAACTGG--------AAAAGAACAAATATTG----ATTACAAGGGTGCAGGAGAGCGGGCCCTTCCAACATCAAAAATATGTATTCagccaggcgaagtggctcacgcttgtaatcccagcactttgggaggcaaaggcagga-ggatcgcttgggcccaagagtttgacaccagcctgggcagcatggtaaaacccagtctcta
  814. s calJac1.Contig13114 26003 446 + 38599 GAATAGACGGGACTGTGGGAACAGCAGAAGGCAGAGGGTGAAGGGTGCCGATCAGAAGGAAAGGTGGAATCCCCACACATTCCCTGCCGCTCCAGGCTTGTTTAGAAAATTGGAAAAGGggccgggtgaggtggcttatgcctgtaatcccagcactttgggaggccgaggggtgcggatcacctgaggtcaggagttcaagaccagcctggccaacatggagaaacccatctctattaaaaaAATTAATAAATGTTTAAAAAAAGAAAATCGGAAAAGGACAGGGGTGCAGGACACTGGGCCCTTCCATCCTCAATCATACATATTCagccaggtgaagtgactcacgcctgtaatcccagcactttgggaggcaaaggcagga-ggatcgcttgggcccaggagtttgagaccagcctgggcaacatagcgaaactcagtctcta
  815. i calJac1.Contig13114 C 0 C 0
  816. s rheMac2.chr10 61927626 346 + 94855758 GAATAGATGGGACTGTGGGAACAGCAGAGGGCAGAGGGTGAAGGGTGGCGATCAGAAAGAAAGACAGAAT--CCCCACATTCCCTGCCCCTCTGGGCT---------------------------------------------------CCGGCCAT---GGAGGAAGTGGGGCTCAGAGGACATT---------GCACCAGACAGGTCT------------------------TGTTTAGAAAATTGG--------AAAAGAACAAATATTG----ATTGCAGGGGTGCAGGAGAATGAGCCCTTCCATCATCAACTATATGTATTCagccaggcgaagtggctcacgcttgtaatcccagcactctgggaagctgaggtaggagggatcacttgggcctgggagtttgagaccagcctgggcaacatggcaaaacccagtctcta
  817. i rheMac2.chr10 C 0 C 0
  818. s hg18.chr22 16125949 347 + 49691432 GAATAGATGGGACTGTGGGAACAGCCAAGGGCAGAGGGTGAAGGGCGGCGATCAGAAGGAAAGACGGAATGCCCACACATTCCCTGCCGCTCCCGGCT---------------------------------------------------CCAGCCGT---GGAGGAAGCGGGGCTCGGAGGACATT---------GCACCAGACAGGTCT------------------------TGTTTAGAAAATTGG--------AAAAGAACAAATATTG----ATTACAAGAGTGCAGGAGAATGGGCCCTTCCATCATCAAAAACAGGTATTCagccaggcgaagtgactcacgcttgtaatcccagcactttgggaggcaaaggcagga-ggatcgcttgggcccaagagtttgagaccagcctgggcagcatggtgaaacccagtctcta
  819. i hg18.chr22 C 0 C 0
  820. s panTro2.chr22 16142739 347 + 50165558 GAATAGATGGGACTGTGGGAACAGCCAAGGGCAGAGGGTGAAGGGCGGCGATCAGAAGGAAAGATGGAATGCCCACACATTCCCTGCCGCTCCCGGCT---------------------------------------------------CCAGCCGT---GGAGGAAGCGGGGCTCAGAGGACATT---------GCACCAGACAGGTCT------------------------TGTTTAGAAAATTGG--------AAAAGAACAAATATTG----ATTACAAGAGTGCAGGAGAATGGGCCCTTCCATCATCAAAAACAGGTATTCagccaggcgaagtgactcacgcttgtaatcccagcactttgggaggcaaaggcagga-ggatcgcttgggcccaagagtttgagaccagcctgggcagcatggtgaaacctagtctcta
  821. i panTro2.chr22 C 0 C 0
  822. a score=141026.0
  823. s ponAbe2.chr22 13846381 193 + 46535552 caaaaaattccaaaaattagctgggtgtggtgatg--tgtctgtggtcccagccattcaggtggctgaggtgggaggactgcttgggcgggggaggtcgaactatgttcacaccacagcattccagcctggatgacagaatgagaccctgtttctaataataagagtaataataataataaAATACATACTCACT
  824. s calJac1.Contig13114 26449 179 + 38599 caaaaaatttcaaaaattagctgggtgtggtgacgcatgcctgtgatcccagccattcaggaggccgagg-------------tgggccagggaggtgaaaccatgttcataccatggcattccagcctggatgacagaataagaccctgtttcTAACAGTAAGAGGAATACTA---ATATAATTCATACTCAGT
  825. i calJac1.Contig13114 C 0 C 0
  826. s rheMac2.chr10 61927972 190 + 94855758 caaaacatttcaaaaatatttt---tgtggtgacg--tgtctgtggtcccagccactcgggaggctgaggtgggaggattgcttgggctgaggaggtcgaaccgtgttcacaccacggcattccagcctggatgacagaatgaggccctgtttctaataataagaGTAATAATAATCATAAAATACATACTCACT
  827. i rheMac2.chr10 C 0 C 0
  828. s hg18.chr22 16126296 193 + 49691432 caaaaaataccaaaaattagctgggtgtggtgacg--tgtctgtggtcccagccattcgggtggctgaggtgggaggattgcttgggcccgggaggtcgaaccatgttcacaccatggcattccagcctggatgacagaatgagaccctgtttctaataataacagtaataataataataaAATACATACTCACT
  829. i hg18.chr22 C 0 C 0
  830. s panTro2.chr22 16143086 193 + 50165558 caaaaaattccaaaaattagctgggtgtggtgacg--tgtctgtggtcccagccattcgggtggctgaggtgggaggattgcttgggcccgggaggtcgaaccatgttcacaccatggcattccagcctggatgacagaatgagaccctgtttctaataataacagtaataataataataaAATACATACTCACT
  831. i panTro2.chr22 C 0 C 0
  832. a score=100514.0
  833. s ponAbe2.chr22 13846574 104 + 46535552 AGCTATGACTCTGCTTTACAGGATAATTGGGGCAGTAATGTTCTTGGGTGAAACTGGGTAACCTAATTTGAAAGGTCTGGGAAACATGGCCCAATTTCAGCCTC
  834. s panTro2.chr22 16143279 104 + 50165558 AGCTATGACTCTGCTTTACAGGATAATTGGGGCAAAAATGTTCTTGGGTGAAACTGGGTAACCTAATTTGAAAGGTCTGGGAAACATGGCCCAATTTCAGCCTC
  835. i panTro2.chr22 C 0 C 0
  836. s hg18.chr22 16126489 104 + 49691432 AGCTATGACTCTGCTTTACAGGATAATTGGGGCAAAAATGTTCTTGGGTGAAACTGGGTAACCTAATTTGAAAGGTCTGGGAAACATGGCCCAATTTCAGCCTC
  837. i hg18.chr22 C 0 C 0
  838. s rheMac2.chr10 61928162 104 + 94855758 AGCTACGATTCTGCTTTACGGGATAACTGGGGCAAAAATATTCCCGGGTGAAACTGGCTAACCTAATTTGAAAGGTCTGGGAAACATGGCCCAATTTCAGCCTC
  839. i rheMac2.chr10 C 0 C 0
  840. s calJac1.Contig13114 26628 104 + 38599 AGCTACTACTCTGCTTTACAGGATAACTGGGGCAAAAGTGTTCCGGGGTGAAACTGGGTAACCTAGTTTGAAAGGTCTGGGAAACATGGCCCAATTTCAGCTTC
  841. i calJac1.Contig13114 C 0 C 0
  842. a score=191565.0
  843. s ponAbe2.chr22 13846678 251 + 46535552 GCTCGCCACTCACAGGCCAGGTAGAGGTTGCGGTTCATAACATACTggacactagacatcactaatgccttcattctacatatgggaaaaccatggctgagaggtcacctgatctcccaggttcactcagagacttggggatgggccgagctccagagcccgggccttgcc-----ctgctccacacccgtacAATTGGCCAAGTTCCCTGGCCAACTAAGGAAGGAGTGCAAGGTGACTGAAGAAAACAAAAACA
  844. s calJac1.Contig13114 26732 251 + 38599 ACTCACCACT--GCGGCCAAGTGGAGATTGAGGTTCGTAACATACGCGATACCAGACATCAccaaagccttcattctacaaatgggaaaaccatggctgaaagctcacctgatctcccaagttcactcagagacttgaggatgggcggagctccagagtccaggccctgccccactccGCTCCAC-CCCATACACC--TTGGAGTCCCCTGGCCAACCAAGGAAGGAGTGTAAGGTGACTtaagaaagcaaaaaca
  845. i calJac1.Contig13114 C 0 I 1072
  846. s rheMac2.chr10 61928266 248 + 94855758 GCTCGCCACTCACAGGCCAAGCGGAGGTTGCGcttcacaacatactggacactagacatcaccaacgccttcactctacaaatgggaaaaccacggctgagaggtcacctggtctccccagttcacccagagacttggggatgggccgagctccagagcccagaccttgcc-----ctgctccaC-CCCACACAGC--ACGAAGTTCCCTGGCCAACTAAGGAAAGAGTGCAAGGTGACCGGAAGAAAACAAAGCA
  847. i rheMac2.chr10 C 0 C 0
  848. s hg18.chr22 16126593 248 + 49691432 GCTCGCCACTCACAGGCCAAGTGGAGGTTGCGGTtcataacatactggacactagacatcactaatgccttcattctacaaatgggaaaaccatggctgagaggtcacctgatctcccaagttcactcagagacgtggggatgggccgagctccagagcctgggccttgcc-----ctgctccaC-CCCATACAGC--ACGAAGTTCCCTGGCCAACTAAGGAAGGAGTGCAAGGTGACTGAAGAAAACAAAAACA
  849. i hg18.chr22 C 0 C 0
  850. s panTro2.chr22 16143383 248 + 50165558 GCTCGCCACTCACAGGCCAAGTGGAGGTTGCGGTtcataacatactggacactagacatcactaatgccttcattctacaaatgggaaaaccatggctgagaggtcacctgatctcccaagttcactcagagacttggggatgggccgagctccagagcctgggccttgcc-----ctgctccaC-CCCATACAGC--ACGAAGTTTCCTGGCCAACTAAGGAAGGAGTGCAAGGTGACTGAAGAAAACAAAAACA
  851. i panTro2.chr22 C 0 C 0
  852. a score=798536.0
  853. s ponAbe2.chr22 13847175 715 + 46535552 AATTTTCACACCCTTAATAGTGGGCTGGGGAGGAGTCAGGATCAGAGCCTCTAGCTCAGATTTCCTTCCCTGAGAGGAT---GTCTTAGAAACTGCATGCTGTGCAGAGTCCTATCATTCAGAAGAAACACAAAACCCAAGCTCTGGGGAGTCACGTGGCCACCACGGATGCCCCGGCCTCGGACTAAGCTAAGGGCATTAGCCCCGGTGGCCTGTAGCTACTCTGCAGCTCTGATCAGTCCTACAGACACACGGCACCCCCCACCTGTCACCTTTAGGACCCTCCAGTCAGGCCCCCTTAAGACGCAATGTTCCCCGTGCTCACCTTTGGGGCTTACTCTGCTGCTAAGGAAACAGCATGCAACTTCCCAGGGTTATGAGAAATAACTTTCCTAGGAATGTCACCAGCTGCAGACGCCCCTGTCATAAACTGTCCCAGCTCTAAGCCGCCTAGGGCTTTTATCCCCTCCTCTTAGCTACTCATTACCCAGCTTAATTAGGCCAGGAAATGCTGGCGCTGAGGACACTCTCGGCAGGAGGCAGGGCTGGAGGAGAGATTCTCAGCAGCGCCACTTCCTGAGGCTTGATCT-GGGGGCTGGGGAAAGCTGTGGAGGAGGACGGCTGGGGATGGCAGGCTGCGTCCTCCAGTGAACAGCTGCTGGGAATGAAGCAGGGATGCACGCATTTGCTCCCCAGGCCCTCTAGGGAGCTGAGGGTT
  854. s panTro2.chr22 16143878 718 + 50165558 AATTTTCACACCCTTAATAGTGGGCTGCGGAGGAGTCAGGATCAGAGCCTCTAGCTCAGATTTCCTTCCCTGAAAGGATACGGTCTTAGAAACTGCATGCTGTGCAGAGTCCTGTCATTCAGAAGAAAGACAAAACCCAAGCCCTGGGGAGTCACGTGGCCACCACGGATGCCCCGGCCTCGGACTAAGCTAAGGGCATTAGCCCGGGTGGCCTGTAGCTGCTCTGCAGCTCTGATCAGTCCTACAGACACACGGCACCCCCCACCTGTCACCTTTAGGACCCTCCAGTCAGGCCCCCTTAAGATGCAATGTTCCCCATGCTCACCTTTGGGGCTTACTCTGCTGCTAAGGAAACAGCATGCAACTTCCCAGGGTTATGAGAAATAATTTTCCTAGGAATGTCACCAGCTGCAGACGCCCCTGTCATAAACTGTCCCAGCTCTAAGCCGCCTAGGGCTTTTATCCCCTCCTCTTAGCTACTCATTACCCAGCTTAATTAGGCCAGGAAATGCTGGCGCTGAGGACACTCTCGGCAGGAGGCAGGGCTGGAGGAGAGATTCTCAGCAGCGCCACTTCCTGAGGCTTGATCT-GGGGGCTGGGGAAGGCCGTGGAGGAGGTCGGCTGGGGATGGCAGGCTGCGTCCTCCAGTGAACAGCTGCTGGGAACGAAGCAGGGATGCACGCATTTGCTCCCCAGGCCCTCCAGGGAGCTGAGGGTT
  855. i panTro2.chr22 C 0 C 0
  856. s hg18.chr22 16127087 718 + 49691432 AATTTTCACACCCTTAATAGTGGGCTGCGGAGGAGTCAGGATCAGAGCCTCTAGCTCAGATTTCCTTCCCTGAAAGGATACGGTCTTAGAAACTGCATGCTGTGCAGAGTCCTATCATTCAGAAGAAACACAAAACCCAAGCCCTGGGGAGTCACGTGGCCACCACGGATGCCCCGGCCTCGGACTAAGCTAAGGGCATTAGCCCGGGTGGCCTGTAGCTGCTCTGCAGCTCTGATCAGTCCTACAGACACATGGCACCCCCCACCTGTCACCTTTAGGACCCTCCAGTCAGGCCCCCTTAAGATGCAGTGTTCCCCATGCTCACCTTTGAGGCTTACTCTGCTGCTAAGGAAACAGCATGCAACTTCCCAGGGTTATGAGAAATAATTTTCCTAGGAATGTCACCAGCTGCAGACGCCCCTGTCATAAACTGTCCCAGCTCTAAGCCGCCTAGGGCTTTTATCCCCTCCTCTTAGCTACTCATTACCCAGCTTAATTAGGCCAGGAAATGCTGGCGCTGAAGACACTCTCGGCAGGAGGCAGGGCTGGAGGAGAGATTCTCAGCAGCGCCACTTCCTGAGGCTTGATCT-GGGGGCTGGGGAAGGCTGTGGAGGAGGTCGGCTGGGGATGGCAGGCTGCGTCCTCCAGTGAACAGCTGCTGGGAACGAAGCAGGGATGCACGCATTTGCTCCCCAGGCCCTCCAGGGAGCTGAGGGTT
  857. i hg18.chr22 C 0 C 0
  858. s rheMac2.chr10 61928759 718 + 94855758 AATTTTCACACCCTTAAAAGTGGGCCGGGGAGGAGTCAGGATCAGAGCCTCTAGCTCAGATTTCCTTCCCTGAGAGGATACGGTCTTAGAAACTGCATGCTGTGCCGAGTTCCGTCATTCAGAAGAAACAGAAAACCCAAGCCCTGGGGAGTCACATGGCCACCACGGACATCCCGGCCTCAGTCTAACCTAAGGGCATTAGCCCGGGTGGCCTGTAGCTGCTCTGCAGCTCTAATCAGTCCTACAGACGCACGGCACCCCCAACCTGTCACCTTTAGGACCTTCCAGTCAGGTCCCCTTAAGACGCAGTGTTCCCTGTGCTCACCTTTGGGGCTTACTCTCGTGCTAAGGAAACAGCATGCAACTTCCCAGGGTTATGAGAAATAACTTTCCTAGGAATGTCACCAGCTGCAGACGCCCCTGTCATAAACTGTCCCAGCTCTAAGCCGCCTAGGGCTTTTATCCCCTCCTCTTAGCTACTCATTACCCAGCTTAATTAGGCCAGGAAATGCTGGCGCTGAGGACACTCTCGGCAGGAGGCAGGGCTGGAGGAGAGATTCTCAGCAGCGCCACTTCCTGAGGCTTGATCT-GGGGGCTGGGGAAGGCCGTGGAGGAGGACGGCTGGGGATGGCAGGCTGCGTCCTCCAGTGAACAGCTGCTGGGAACGAAGCAGGGATGCACGCATTTGCTCCCCAGGCCCTCCAGGGAGCTGAGGGTT
  859. i rheMac2.chr10 C 0 C 0
  860. s calJac1.Contig13114 28055 704 + 38599 AATTTTCACACCCTTAAAAGTGGGCCGGGGCAGAGTCAGGATCAGAGCCTCTCGCTCAGATTTCCTGCCCTGAGAGGATACGG-----GGA-------GCTGTGCAG-GTCCTATCATTCAGAAGAAACACAAAACCCGAGCCCCGGGGAGTCACGTGGCCACCAAGGACGCCCCAGCCTCGGACTAAGCTGAGGGCGTGAGCCCGGGTGGCCTGTAGCTGCTCTGCTGCTCTGATCAGTCCTGAAGACGCACGGCACCCCC-ACCTGTCACCTTTAGGACCCTTGGGTCTGGCCTCCTTAAGACTCAGTGTTCCCGGTGCTCACCTTTGGGGCTCACTCTGCTGCTAAGGAAACAGCAAGCAACTTCGCAGGGTTCTGAGAAATAACTTTCCTAGGAATGTCACCAGCTGCAGACGCCCCTGTCATAAACTGTCCCAGCTCTAAGCCGCCTAGGGCTTTTATCCCCTCCTCTTAGCTACTCATTACCCAGCTTAATTAGGCCAGGAAATGCTGGCGCTGAGGACACTCTCGGCAGGAGGCAAGGCTGGAGGAGAGATTCTCAGCAGCGCCACTTCCTGAGGCTTGAGCTGGGGGGCTGGGGAGGGCCGTGGAGGAGGACGGCTGGGGACTGCAGGCTGCGTCCTCCAGTGAACAGCTGCTGGAAACGGAGCAGGGATGCGCGCATTTGCTCCCC-GGCCCTCCAGGGAGCTGAGGGTT
  861. i calJac1.Contig13114 I 1072 C 0
  862. a score=69329.0
  863. s ponAbe2.chr22 13847890 70 + 46535552 GCACTTGTTTACGGTAACAGCACCGGATCTGAAGGCCTTGGAAGGCTCTGCCTGCCCCCACCCCAACCCT
  864. s calJac1.Contig13114 28759 69 + 38599 GCGCTTGTTTACGGGAACAGCACGGGATCTGAAGGCC-TGGAAGGCTCTGCCCGCACCCGCCCCAGCCCT
  865. i calJac1.Contig13114 C 0 C 0
  866. s rheMac2.chr10 61929477 69 + 94855758 GCACTTGTTTACGGTAACAGCACCGGATCTGAAGGCC-TGGAAGGCTCTGCCTGCCCCCACCCCAACCCT
  867. i rheMac2.chr10 C 0 C 0
  868. s hg18.chr22 16127805 70 + 49691432 GCACTTGTTTACGGTAACAGCACCGGATCTGAAGGCCTTGGAAGGCTCTGCCTGCCCCCACCCCAACCCT
  869. i hg18.chr22 C 0 C 0
  870. s panTro2.chr22 16144596 70 + 50165558 GCAGTTGTTTACGGTAACAGCACCGGATCTGAAGGCCTTGGAAGGCTCTGCCTGCCCCCACCCCAACCCT
  871. i panTro2.chr22 C 0 C 0
  872. a score=176944.0
  873. s ponAbe2.chr22 13847960 145 + 46535552 CCCATCTCAATTAACTAGCTTCACCACCCCGCCCCCACTCTTTCCTAGGGAAGAGGTTGAAACCTCAGTTACCACTCACAATATTTCAGCCCCAACCCTGACATAATCACAGTCAAAGACCCAGCCTGAGATGCCTTCCATTTTC
  874. s panTro2.chr22 16144666 145 + 50165558 CCCATCTCAATTAACCAGCTTCACCACCCCACCCCCACTCTTTCCTAGGGAAGAGGTTGAAACCTCAGTTACCACTCACAATATTTCAGCCCCAACCCTGACATAATCACAGTCAAAGACCCAGCCTGAGATGCCTTCCATTTTC
  875. i panTro2.chr22 C 0 C 0
  876. s hg18.chr22 16127875 145 + 49691432 CCCATCTCAATTAACCAGCTTCACCACCCCACCCCCACTCTTTCCTAGGGAAGAGGTTGAAACCTCAGTTACCACTCACAATATTTCAGCCCCAACCCTGACATAATCACAGTCAAAGACCCAGCCTGAGATGCCTTCCATTTTC
  877. i hg18.chr22 C 0 C 0
  878. s rheMac2.chr10 61929546 145 + 94855758 CCCATCTCAATTAACCAGTTTCACCACCCCGCCCCCACTCTTTCCTCGGGAAGAGGTTGCAACCTCAGTTACCACTCACAATATTTCAGCCCCAACCCTGACATAATCACAGTCAAAGACCCAGCCTGAGATGCCTTCCATTTTC
  879. i rheMac2.chr10 C 0 C 0
  880. s calJac1.Contig13114 28828 145 + 38599 CCCATCTCAATTAACCAGCTTCACCACCCCGCCCCCACTCTTTCCTCGGGGAGAGGTTGCAACCTCAGTTACCACTCACAATATTTCAGCCCAGACCCTGACATAATCACAGTGAAAGACCCGGCCTGAGATGCCCTCCATTTTC
  881. i calJac1.Contig13114 C 0 I 1045
  882. a score=25495.0
  883. s ponAbe2.chr22 13848912 35 + 46535552 ggcgaaaacc--atctctactacaaattcaaaaatta
  884. s panTro2.chr22 16145618 35 + 50165558 ggtgaaaccc--gtctctactaaaaattcaaaaatta
  885. i panTro2.chr22 C 0 I 12
  886. s hg18.chr22 16128828 35 + 49691432 ggtgaaaccc--gtctctactaaaaattcaaaaatta
  887. i hg18.chr22 C 0 C 0
  888. s rheMac2.chr10 61930489 36 + 94855758 ggtgaaaccct-gtctctactacagattcaaaaatta
  889. i rheMac2.chr10 C 0 C 0
  890. s calJac1.Contig13114 30018 37 + 38599 ggtgaaaccctcatccctactaaaaattcaaaaatta
  891. i calJac1.Contig13114 I 1045 C 0
  892. a score=136355.0
  893. s ponAbe2.chr22 13848947 177 + 46535552 gccagttgtgttgttgggcgcctatagtcccagatactcaggagcctgaggtacaagaatcgcttggacccggaaggcagaggctgcagtgagctgagatcaaaccattgcactccagcctgggtgtcagagcg--------agact-tatc----------------acaaacaaacaaaagaaTCACACCAGCCTAGAGC
  894. s hg18.chr22 16128863 184 + 49691432 gccagttgtgttgttgggcgcctatagtcccag-tactcaggagcctgaggcacaagaatcgcttggacccggaaggcagaggctgcagtgagctgagatcaaaccattgcattccagcctgggcgtcagagcg--------agact-TATCTcaaaca--------aacaaacaaacaaaAGAATCACACCAGCCTAGAGC
  895. i hg18.chr22 C 0 C 0
  896. s panTro2.chr22 16145665 184 + 50165558 gccagttgtgttgttgggcgcctatagtcccag-tactcaggagcctgaggcacaagaatcgcttggacccggaaggcagaggccgcagtgagctgagatcaaaccattgcattccagcctgggcgtcagagtg--------agact-tatctcaaata--------aacatacaaacaaaagaaTCACACCAGCCTAGAGT
  897. i panTro2.chr22 I 12 C 0
  898. s rheMac2.chr10 61930525 201 + 94855758 cccagttgtattgttgggcgcctgtagtcccagctactcaggagcctgaggcacaagaatcccttggacctggaagacagaggctgcagcgagctgagatcaaaccattgcactccagcctgggcgtcagagcgTCAGAGCCAGACT-TATCTcaaacaaacaaacgaacaaacaaacaaaAGAATCACACCAGCCTAGAGC
  899. i rheMac2.chr10 C 0 C 0
  900. s calJac1.Contig13114 30055 176 + 38599 gccggatgtgctgttgggtgcctgtagtcccagctactcgggagcctgaggcacaagaattgcttgaaccaggaaggcagaggctgcagtgagctgagatcacgccattgtactccagcctgggtgtcagagtg--------agactctgtctcaaaga------------------aaagagaaTCACACCAGCCTAGAGC
  901. i calJac1.Contig13114 C 0 C 0
  902. a score=98617.0
  903. s ponAbe2.chr22 13850776 127 + 46535552 AGCCACAGCACTGGGTGGATCATCGCCCTGGAGAGGGGATCGTGAGGGCTTAGAGTCACAGTGTCATCCAAGAAGGACTTGTCAGCCTCTGCAGAGGCTGCCTCTCACCTGCGGAACACGTACCCAC
  904. s calJac1.Contig13114 30231 119 + 38599 AGCCGCGTCACTGGGTAGATCATGGCTCTGGAGAGGGGACCGCGAGGGCTCAGAGTCACAGTGTCATCTGAGAGGGACTG-------TCTGCAGAGGCTGCCTCTCACCCG-GGAGCACACACGCAC
  905. i calJac1.Contig13114 C 0 C 0
  906. s rheMac2.chr10 61930750 125 + 94855758 AGCCACAGCGCTGGGTGGATCATCGCCCTGGAGAGGGGATTGTGAGGGCTTAGAGTCACAGTGTCATCCAAGAAGGACTTGTCAGCCCCTGCAGAGGCT--CTCTCACCTGCGGAATACGTGCCCTC
  907. i rheMac2.chr10 C 0 C 0
  908. s panTro2.chr22 16145873 125 + 50165558 AGCCACAGCACCGGGTGGATCATCGCCCTGGAGAGGGGAATATGAGGGCT--GAGTCACAGTGTCATCCAAAAAGGACTTGTCAGCCTCTGCAGAGGCTGCCTCTCACCTGTGGAACACATACGCAC
  909. i panTro2.chr22 C 0 C 0
  910. s hg18.chr22 16129071 125 + 49691432 AGCCACAGCACCAGGTGGATCATCGCCCTGGAGAGGGGAATATGAGGGCT--GAGTCACAGTGTCATCCAAAAAGGACTTGTCAGCCTCTGCAGAGGCTGCCTCTCACCTGCGGAACACGTACCCAC
  911. i hg18.chr22 C 0 C 0
  912. a score=108740.0
  913. s ponAbe2.chr22 13850903 149 + 46535552 TGTGCTTTAAGTCCTGGAGCGATTTGGTTCAGCCTTCTCAGGTGTATGGTTTTACGCCTTGGCTTTTCCATTGTGTCCACATTTTCTCAGAAAATGCAAATTTCTTGAGAAGTGACCTCA-TTCCCTCACCTGCAGC-AGACAAAGGTAAT
  914. s hg18.chr22 16129196 151 + 49691432 TGTGCTGTAAGTCCTGGAGCAATTTGCTTCAGCCTTCTCAGGTGTATGGTTTTATGCCTTGGCTTTTCCATTGTGTCCACATTTTCTCAGAAAATGCAAACTTCTTGAGAAGTGACCTCATTTCCCTCACCTGCAGCAAGACAAACGTAAT
  915. i hg18.chr22 C 0 C 0
  916. s panTro2.chr22 16145998 151 + 50165558 TGTGATTTAAGTCCTGGAGCAATTTGCTTCAGCCTTCTCAGGTGTATGGTTTTATGCCTTGGCTTTTCCATTGTATCCACATTTTCTCAGAAAATGCAAACTTCTTGAGAAGTGACCTCATTTCCCTCACCTGCAGCAAGACAAACGTAAT
  917. i panTro2.chr22 C 0 C 0
  918. s rheMac2.chr10 61930875 150 + 94855758 TGTGCTTTAAGTCCTGGAGCGATTTGGTTCAGCCTCCTCCGGTGTGTGGTTTTGTG-CTGGGCTTTTCCATTGTGTCCACGTTTTCTCAGAAAATGCAAGTTTCTTGAGAAGTGACCTCATTTCCCTCACCTGCAGCAAGACAAAGGTGAT
  919. i rheMac2.chr10 C 0 C 0
  920. s calJac1.Contig13114 30350 151 + 38599 CGTGCTACAGGTCCTGCAGGGATTCGGTCCAGCCTTCACAGGTGTATGGTTTTATGCCTTGGCTCTTCCGTTGTGTCCATGTTTTCTCAGAAAATGCAAATTTCTTGAGAAGTGACTTCTTCTCCCTCACCTGAAGCAAGATAAAGGTGAT
  921. i calJac1.Contig13114 C 0 C 0
  922. a score=40981.0
  923. s ponAbe2.chr22 13851052 55 + 46535552 TCTTGGCACTCAGATATCCAATAGTGCTTTGATTTTAAATTTTCTA------TGTAACTTT
  924. s hg18.chr22 16129347 61 + 49691432 TCTTGGCACTCAGATATGCAATAGTGCTGTGATTTTAACTTTTCTATGTAACTGTAACTTT
  925. i hg18.chr22 C 0 C 0
  926. s panTro2.chr22 16146149 61 + 50165558 TCTTGGCACTCAGATATGCAATAGTGCTGTGATTTTAACTTTTCTATGTAACTGTAACTTT
  927. i panTro2.chr22 C 0 C 0
  928. s rheMac2.chr10 61931025 55 + 94855758 TCTTGGCCCTCGGATATCCGATAGTGCTGTGATTTTAAATTTTCTA------TGTAACTTT
  929. i rheMac2.chr10 C 0 C 0
  930. s calJac1.Contig13114 30501 55 + 38599 TCTCAGCACTCAGATATCCAATAGTGCTGTGATTTTAAATTTTCTA------GATAACTTT
  931. i calJac1.Contig13114 C 0 C 0
  932. a score=104274.0
  933. s ponAbe2.chr22 13851107 132 + 46535552 GAAAAGTACTCTCCCATTCCACCAAGCaaaaaaaaaaaaaaaaaaaaaaaaaGCCCTAGGGCAGGGGTGGAGGGATTGGGGCGTAAGGGGAAC--------CTCCAATTCCATCCAGAGGAGGGCACTAGTCCATCTGCT
  934. s hg18.chr22 16129408 129 + 49691432 GAAAAGTACTCTCCCATTCCACCAAGCAAAAAAAG---AAAAAAAAAAAAAAGCCCCAGGGCAGGGGTGGAGGGATTGGGGCGTAAGGGGAAC--------CTCCAATTCCATCCAGAGGAGGGCACTAGTCCATCTGCT
  935. i hg18.chr22 C 0 C 0
  936. s panTro2.chr22 16146210 126 + 50165558 GAAAAGTACTCTCCCATTCCACCAAGCAAAAAAAG------AAAAAAAAAAAGCCTTAGGGCAGGGGTGGAGGGATTGGGGCATAAGGGGAAC--------CTCCAATTCCATCCAGAGGAGGGCACTAGTCCATCTGCT
  937. i panTro2.chr22 C 0 C 0
  938. s rheMac2.chr10 61931080 117 + 94855758 GAAAAGTGCCCTCCCATTCCACCAAACAAACAAAA---------------AAGCCCCAGGGCAGGGGTGGAAGGATTGGGGCGCCAGGGGAAC--------CTCCAATTCCATCCAGAAGAGGGCACTAGTCCGTCTACT
  939. i rheMac2.chr10 C 0 C 0
  940. s calJac1.Contig13114 30556 130 + 38599 GAAAAGTGCTCTCCCATTCTACCAAGCaaaaaaaaaaaacaaaaaaaaaaaCGCCCCAGGGCAGGGGTGGAGGGATT---------AGGGAACCTCCAATTCTCCAATTCCAACCAGA-GAGGGCACTAGTCCATCTACC
  941. i calJac1.Contig13114 C 0 C 0
  942. a score=129434.0
  943. s ponAbe2.chr22 13851239 166 + 46535552 CAGGCCCTCCCCACATCGAGGTGCTCCTAGGTCCCCAAGAAAATCTCTTGATCCACCCAAAGAATCCCAAACTACTGACCATTGGTTTCCAAGGTCCATGAGTCATGACACTCTTAGACTTACTTAGCTGGTAAGATGCTTCTTATTTGAAAAACACAAAATCAAG
  944. s hg18.chr22 16129537 166 + 49691432 CAGGCCCTCCACACATCGAGGTGCTCCTAGGTCCCCAAGAAAATCTCTTGATCCACCCAAAGAATCCCAAACTACTGACCATTGGTTTCCAAGGTCCATGAGTCATGACACTCTTAGACTTACTTAGCTGGTAAGATGCTTCTCATTTGAAAAACACAAAATCAAG
  945. i hg18.chr22 C 0 C 0
  946. s panTro2.chr22 16146336 166 + 50165558 CAGGCCCTCCCCACATCGAGGTGCTCCTAGGTCCCCAAGAAAATCTCTTGATCCACCCAAAGAATCCCAAACTACTGACCATTGGTTTCCAAGGTCCCTGAGTCATGACACTCTTAGACTTACTTAGCTGGTAAGATGCTTCTCATTTGAAAAACACAAAATCAAG
  947. i panTro2.chr22 C 0 C 0
  948. s rheMac2.chr10 61931197 166 + 94855758 CAGGCCCTCCCCACATCGAGGTGCTCCCAGGTGCACAAGAAAATCTCTTGATCCACCCAAAGAATCCCAAACTACTGACCATTGGTTTCCAAGGTCCATGAGTCGCGACACTCTTAGACTTACTTAGCCAGTAAGATGCTTCTCATTTGAAAAACATAAAATCAAG
  949. i rheMac2.chr10 C 0 C 0
  950. s calJac1.Contig13114 30686 162 + 38599 CAGGCCCTCCCCACATGGAGGTGCTCCCAGGTCCCCAAGAAAATCTCTTGATCCACTCAAAGAATCCCAAAGTACTGACCATTGGTTTTCAAGGTCCCAAAGTCATGACACTCTTAG----CCTTAGCTGGAAAGGTGCTTCTCATTTGAGAAACATAAAATCagc
  951. i calJac1.Contig13114 C 0 I 623
  952. a score=166599.0
  953. s ponAbe2.chr22 13851405 199 + 46535552 AAAGCTC---CTGGCTGAGCAGCTAGAGGCATAAGAAACCTTGGAATCCTAAACCATCAGGGTCTCTGGCTTTGTCAGTCTCTG-TTGGGATCCGAGATAAGTGAAGTCAGGGGtaaagaaaataaatcagcagcttcccagggtgctggaaaggctgtcaggtagaacttccttccatgtggctccagggagcagaacttgg
  954. s calJac1.Contig13114 31471 203 + 38599 AAAGCTCTAGCTGGCTGAGCAGCTAGAGGCATAAGAAACCTTGGAATCCTAAACCTTCAGGGTATCTGGCTTTGTTAGTCTCTGCTTGGGATCGGAGATAAGGGAAATCAGGGATAAAGAAACCAAATCGGCAGCTTCCCAGGGTGCTGgaaagactgtcagacagaacttccttccgtgtggttccagggagcagaactcgg
  955. i calJac1.Contig13114 I 623 C 0
  956. s rheMac2.chr10 61931363 200 + 94855758 AAAGCCC---CTGGCTGAGCAGCCGGAGGCATAAGAAACCTTGGAATCCTAAACCATCGGGGTCTCTGGCTTTGTCAGTCTCTGCTTGGGATccgagataagtgaagtcaggggtaaagaaaataaatcagcagcttcccagggtgctggaaaggctgtcaggcagaacttccttccgtgtggctccagggagcagaacttgg
  957. i rheMac2.chr10 C 0 C 0
  958. s panTro2.chr22 16146502 199 + 50165558 AAAGCTC---CTGGCTGAGCAGCTAGAGGCATAAGAAACCTTGGGATCCTAAACCATCAGGGTCTCTGGCTTTGTCAGTCTCTG-TTGGGATccgagataagtgaagtcaggggtaaagaaaataaatcggcagcttcccagggtgctggaaaggctgtcaggcagaacttccttccatgtggctccagggagcagaacttgg
  959. i panTro2.chr22 C 0 C 0
  960. s hg18.chr22 16129703 199 + 49691432 AAAGCTC---CTGGCTGAGCAGCTAGAGGCATAAGAAACCTTGGAATCCTAAACCATCAGGGTCTCTGGCTTTGTCAGTCTCTG-TTGGGATcctagataagtgaagtcaggggtaaagaaaataaatcggcagcttcccagggtgctggaaaggctgtcaggcagaacttccttccatgtggctccagggagcagaacttgg
  961. i hg18.chr22 C 0 C 0
  962. a score=53032.0
  963. s ponAbe2.chr22 13851604 64 + 46535552 gtaaagcttcagaaaggccgctgtgggtttcacatgcagctgttcctaacccctggggctgtcA
  964. s hg18.chr22 16129902 64 + 49691432 gtaaagcttcagaaaggccgctgtgggcttcacatgcagctgttcctaacccctggggctgtcA
  965. i hg18.chr22 C 0 C 0
  966. s panTro2.chr22 16146701 64 + 50165558 gtaaagcttcagaaaggccgctgtgggcttcacatgcagctgttcctaacccctggggctgtcA
  967. i panTro2.chr22 C 0 C 0
  968. s rheMac2.chr10 61931563 64 + 94855758 gtaaagcttcagaaaggccgccgtggatttcacaggcagctcttcctgagccctggggctgtca
  969. i rheMac2.chr10 C 0 C 0
  970. s calJac1.Contig13114 31674 63 + 38599 gtaaagcttcaggaaggctgctgtgggcttcacaggcagctgtt-ctaacccctggggctgtca
  971. i calJac1.Contig13114 C 0 C 0
  972. a score=147383.0
  973. s ponAbe2.chr22 13851668 199 + 46535552 GGAAT----TCTGTCTTGCTAAGGAAGGAAGGCCAGGCAGTGCAGGTGGAGGTGGGGGTTCTGGGGAGGTGGGTGCTGGGGG-ACTGTGCACCGAGGAAGATGTGGGGCCTTCAGGGTCACACCTCCCACCCCCAGAATTCTACAGACAAAGATGCTGTGATGTATAACTAGGAAGGGTGAAGGTGAGGGGACAGCCACTGAAA
  974. s calJac1.Contig13114 31737 194 + 38599 gaaacgcagtctgtcttgcgaagGAAGGCAGGCCAGGCAGTGCAGGTGCACGTGGGGGATCCGGGGAGGCAGGAGCTGGAGGCGCTGTGCACTGAGGAATACGTGGGGCCTTCAGAGTCACACCTCCCACCC----------GCAGACGAAGATGCTGTGACGCGTAACTAGGAAGGGTGAGGGTGGGAGGACAGCCACTGAAA
  975. i calJac1.Contig13114 C 0 C 0
  976. s rheMac2.chr10 61931627 198 + 94855758 -gaaC----TCTGTCTTGCTAAGGAAGGAAGGCCAGGCAGTGCAGGTGCAGGTAGGGGTTCTGGGGAGGTGGGTGCTGGGGG-GCTGTACACCGAGGAAGATGTGGGGCCTTCAGGATCACACTTCCCACCCCCAGAATTCTACAGACGAAGATGCTGTGATGTATAACTGGGAAGGGTGAAGGTGGGGGGACAGCCACTGAAA
  977. i rheMac2.chr10 C 0 C 0
  978. s panTro2.chr22 16146765 199 + 50165558 GGAAT----TCTGTCTTGCTAAGGAAGGAAGGCCAGGCAGTGCAGGTGCAGGTGGGGGTTCTGGGGAGGTGGGTGCTGGGGG-ACTGTGCACCGAGGAAGATGTGGGGCCTTCAGGGTCACACCTCCCACCCCCAGAATTCTACAGACGAAGATGCTGTGATGTATAACTAGGAAAGGTGAAGGTGGGGGGACAGCCACTGAAA
  979. i panTro2.chr22 C 0 C 0
  980. s hg18.chr22 16129966 199 + 49691432 GGAAT----TCTGTCTTGCTAAGGAAGGAAGGCCAGGCAGTGCAGGTGCAGGTGGGGGTTCTGGGGAGGTGGGTGCTGGGGG-ACTGTGCACCGAGGAAGATGTGGGGCCCTCAGGGTCACACCTCCCACCCCCAGAATTCTACAGACAAAGATGCTGTGATGTATAACTAGGAAAGGTGAAGGTGGGGGGACAGCCACTGAAA
  981. i hg18.chr22 C 0 C 0
  982. a score=194215.0
  983. s ponAbe2.chr22 13851867 224 + 46535552 CAGAGCCAGGATTGTGAGCTCTAACCCAGGGGTTTTCCTCTCAACACCATCTGGGGCACGCTTTTAGAGCATCTCCCCACTCCATTCACTCTACACCCTCCTTTCCACCCACTGGGAGGCTCCATCTTCCTCAGCTGACTCCCACACAGAGGCAGAAGAGGGAGAAGCCGCCTCCACCCTGAGGAGCTTGGGGGCAAACATCTGCTCCCTGCCATTGTTTCCCC
  984. s hg18.chr22 16130165 223 + 49691432 CAGAGCCAGGATGTTGAGCTCTAACCCAGGGATTTTCCTCTCAACACCATCTGGGGCACGCTTTTAGAGCATCTCCCCTCCCCATTCACTCTACA-CCTCCTTTCCACCCACCGGGAGGCTCCATCTTCCTCAGTTGACTCCCACACAGAGGCAGAAGAAGGAGAAGCTGCCTCCACCCTGAGGAGCTTGGGGGCAAACATCTGCTCCCTACCATTGTTTCCCC
  985. i hg18.chr22 C 0 C 0
  986. s panTro2.chr22 16146964 210 + 50165558 CAGAGCCAGGATGGTGAGCTCTAACCCAGGGATTTTCCTCTCAACACCATCTGGGGCA--------------CTCCCCTCCCCATTCACTCTACACCCTCCTTTCCACCCACCGGGAGGCTCCATCTTCCTCAGTTGACTCCCACACAGAGGCAGAAGAAGGAGAAGCTGCCTCCACCCTGAGGAGCTTGGGGGCAAACATCTGCTCCCTGCCATTGTTTCCCC
  987. i panTro2.chr22 C 0 C 0
  988. s rheMac2.chr10 61931825 224 + 94855758 CGGAGCCAGGACAGTGAGCTCTAACCCAAGGGTTTTCCTCTCAACACCGTCTGGGGCATGCTTTTAGACCATCTCCCCTCTCCATTCACTCTACACCCTCCTTTCCACCCACTGGGAGGCTTCGTCTTCCTCGGTCGACTCCCACACAGAGGCAGAAGAGGGAGAAGCCGCCTCCACCCCGAGGAGCTTGGGGGCAAACATCTGCTCCCTGCCATTGTTTCCCC
  989. i rheMac2.chr10 C 0 C 0
  990. s calJac1.Contig13114 31931 222 + 38599 CAGAGCCAGGACCGCCAGCTCTAAGCCAGGGCCTTTCCTCTCAGCATCATC-AGGGCACGCTTTAAGGGCAGCT-CCCTCTCCATTCACTCTACAACCACCTTTACACCCACTGGGAGGCATCAGCTTCTAGGGTTGACCCCCACACAGAGGCAGAAGTGGGAGATGCCGCCTCCACCCTGAGGAACGTGGGGACAAACATCTGCTCCCTGCCATTGTCTCCTC
  991. i calJac1.Contig13114 C 0 C 0
  992. a score=232012.0
  993. s ponAbe2.chr22 13852091 334 + 46535552 TTATTTAGTGGGTGGGAAGGACCTGGCAGAGCTCTTCAGCCAAATCACACACCCAGGCGACAGTTTGGTGAACCCTCCTCCAGGGGAACCGGGGAAAGCTGAAAATGCCTGTTGGCCTAACAGGGGTTTTCAGAGTGTCACTCCCATGCTGTGTGGGTGGGGCGGAGAGGTGACATTCACCCTCCTTGGCAGCACCCGTTGTGTCCCTCGTGTGTTCTCCGGCTGCAGAGCCCAGTGAGGCTATGCGGTGACGGATACAGTCACTTGTGCCTCTCTCTCCCTTCTGCTCCCCACCGCCCC-ATGCCACTTCTACCCACTCAGGCTTGCAGCAGA-G
  994. s hg18.chr22 16130388 332 + 49691432 TTATTTAGTGGGTGGGAAGGACCTGGCAGAGCTCTTCAGCCAAATCACACACCCAGGTGGCAGTTTGGTGAACCCTCCTCCAGGGTAACTGGGGAAAGCTGAAAATGCCTGTTGGCCTGACAGGGGTTTTCAGAGTGTCACTCCCATGCTGAGTGGGTGGGGCGGAGAGGTGACATTCACCCTCCTCGGCAGCACCCCTTATGTCCCTCGTGTGTTCTCCGGCTGCAGAGCCCAGTGAGGCTATGCAGTGACAGAT--AGTCACTTGTGCCTCTCTCTCCCTTCTGCTCCCCCCCGCCCC--TGCCACTTCTACCCACCCAGGCTTGCAGCAGAGG
  995. i hg18.chr22 C 0 C 0
  996. s panTro2.chr22 16147174 333 + 50165558 TTATTTAGTGGGTGGGAAGGACCTGGCAGAGCTCTTCAGCCAAATCACACACCCAGGTGGCAGTTTGGTGAACCCTCCTCCAGGGTAACTGGGGAAAGCTGAAAATGCCTGTTGGCCTGACAGGGGTTTTCAGAGTGTCACTCCCATGCTGTGTGGGTGGGGCGGAGAGGTGACATTCACCCTCCTCGGCAGCACCCCTTATGTCCCTCGTGTGTTCTCCGGCTGCAGAGCCCAGTGAGGCTATGCAGTGACAGAT--AGTCACTTGTGCCTCTCTCTCCCTTCTGCTCCCCCCCGCCCC-ATGCCACTTCTACCCACCCAGGCTTGCAGCAGAGG
  997. i panTro2.chr22 C 0 C 0
  998. s rheMac2.chr10 61932049 310 + 94855758 TTATTTAGTGGGTGGGAGGG-----------------------ATCACACACCCAGGCGACAGTTTGGTGAACCCTCCTCCAGGGTAACTGGGGAAAGCTGAAAATGCCTTTTGGCCTGCGAGGGGTTTTCAGAGTGTCACTCCCATGCTGCGTGGGTGGGGCGGAGAGGTGACATTCACCCTCCTTGGCAGCACCTCTTGTGTCGCTCCTGTGTTCTCCGGCTGCGGAGCCCTGCGAGGCTGTG--GTGACGGATACAGTCACTTGTGCCTCTCCCTCCCCTCGGGACCCCCCCCCCCCCGTGCCACTTCTACCCACCCAGTCTTGCAGGAGAG-
  999. i rheMac2.chr10 C 0 I 1229
  1000. s calJac1.Contig13114 32153 329 + 38599 TTATTTGGTGGGTGGGAGGGACCTGGTGGAGCTCTTCAGCCAAATAACACACACAAGCGGCA-CCTGGTAAACCCTCCTCCAGGGTAACTGGGGAAAGCTGAACACGCCCGGTGGCCTGAGAGGGGTTTTCAGAATGTCACTTTAATGCTGTGTGGGTGGGGCAGAGAGGTGACATTTCCCCTTCTTGGCAGCACCCCTCTTGTCCCTCGTGTATTCTCTGGCTGCGGAGCCCGATGACGCTATGTGGGGACAGATACAGTCACGGGTGCCTCTCCCTCCCCTATGGGC----CTGCCCTGGTGCCACTTCTAACCAC-CAGGTTTGCAGCAGAG-
  1001. i calJac1.Contig13114 C 0 I 1
  1002. a score=205167.0
  1003. s ponAbe2.chr22 13852425 382 + 46535552 GCCTGGAGTCTTGGGTGTGGGCGGGTGTTTATCTCATCAGACAACTAAA---------------------------G-TTTGCCAGGGCTGGGCTGCGGGTTCACAAATTCACTTGCTGACCTGCTTAGGAAACACAGGGCAGGGTTTTGTTCCAGTGCCTTCCTGGCAGCCACACCCACTTAACACCAAGTTCCAAATGCC----AGGTCTGAGACAGAGGGGATCGCAGTG----GAGATTG----CACTCGCTTCAGCA-TTTA-----CCAGCTCTGGT---------AATATCTGTTGAGCAACTGCTCCATGGCA-GGGCTGGGGAT----GTGACCCGTGAACAAATTGGCCAGGGCAGG-TCCCTGCTCGGACCT-----GTGGTGCTTGCAGTCA-----------------------CCGTCTGGGGAAGGACTGCAAAACCACACAGACAGTATGACAGA
  1004. s hg18.chr22 16130720 383 + 49691432 GCCTGGAGTCTTGGGTGTGGGCAGGTGTTTATCTCATCAGACAACTAAA---------------------------GTTTTGCCAGGGCTGGGCTGCGGGTTCACGCATTCACCTGCTGACCTGCTTAGGAAACACAGGGCAGGGTTTTGTTCCAGTGCCTTCCTGGCAGCCACACCCACTTAACACCAAATTCCCAATGCC----AGGTCTGAGACAGAGGGGATCGCAGTG----GAGACTG----CACTCGCTTCAGCA-GTTA-----CCAGCTCTGGT---------AATATCTGTTGAGCAACTGCTCCATGGCA-GGGCTGGGGAG----GTGGCCCGTGAACAAATTGGCCAGGGCAGG-TCCCTGCTCCGACCT-----GTGGTGCTTGCAGTCA-----------------------CCGTCTGGGGAGGGACTGCAAAACCACACAGACAGTACGACAGA
  1005. i hg18.chr22 C 0 C 0
  1006. s panTro2.chr22 16147507 382 + 50165558 GCCTGGAGTCTTGGGTGTGGGCAGGTGTTTATCTCATCAGACAACTAAA---------------------------GTTTTGCCAGGGCTGGGCTGTGGGTTCACGCATTCACCTGCTGACCTGCTTAGGAAACACAGGGCAGGGTTTTGTTCCAGTGCCTTCCTGGCAGCCACACCCACTTAACGCCAAGTTCCCAATGCC----ACGTCTGAGACAGAGGGGATCGCAGTG----GAGACTG----CACTCGCTTCAGCA-GTTA-----CCAGCTCTGGT---------AATATCTGTTGAGCAACTGCTCCATGGCA-GGGCTGGGGAG----GTGGCCCGTGAACAAATTGGCCAGGGCAGG-TCCCTGCTCCGACCT-----GTGGTGCTTGCAGTCA-----------------------CCGTCTGGGGA-GGACTGGAAAACCACACAGACAGTACGACAGA
  1007. i panTro2.chr22 C 0 C 0
  1008. s rheMac2.chr10 61933588 383 + 94855758 ACCTGGAGTCTTGGGTGTGGGCGGGTGTTTATCTCATCAGACAACTAAA---------------------------GTTGTGCCGGGGCTGGGCTGCGGGTTCACGCATTCACCTGCTGATCTGCTTAGGAAACACAGGGCAGGGTTTTGTTCCAGTGCCTTCCTGGCAGCTGCACCCACTTAACACCAAGTTCCAAATGCC----AGGTCTGAGACAGAGGGGATCGCCGTG----GAGACCG----CACTCGCTTCAGCA-GTTA-----CCAGCTCTGGT---------CATATCTGTTGAGCAACCGCTCCGTGGCG-GGGCTGGGGAT----GCCACCCGGGAACAAACTGGCCGGTGCAGG-TCCCTGCTCGGACCT-----GGGGTGCTTGCAGTCA-----------------------CAGTCTGGGGAGGGGCTGCAAACCCACACAGACAGCATGACAGA
  1009. i rheMac2.chr10 I 1229 C 0
  1010. s calJac1.Contig13114 32483 436 + 38599 GCCTGGATTCTTGGGTGTGGGTGGGCGTTTATCTCATCAGACAACTAAAAACCAGGCGGAGGGGACTGAATCACACGTCTTGCTGGGACTGGGATGCGGGTTCATGCGTTCACCTGCTGCCCTGCTTA-AAAACACAGGGCGGG-------------------CTgccgggcgcagtggctcaagcctgtaatcccagcactttgggaggctgaggc-gggtggatcacgaggtcaagagatcgagaccatcctggtcaacatggtaaaaccccgtctctactaaaaatacaaaaattagctgggca------cggtggcgcgtgcctgtaatcccagctactcagga-------ggccgaggcaggagacttacctgaacccaggaggaggagattgcggtgagccgagattgcgccatagcactccagcctgggtaacaagagcaaaactacgtc-acaaaaaaacaaa
  1011. i calJac1.Contig13114 I 1 I 47
  1012. a score=367208.0
  1013. s ponAbe2.chr22 13853665 718 + 46535552 ttggccaggctggtcttgaactcctgacctc--gtgatccatccgcctcagcctcccaaagtgctgggattacaggcatgagc--caccgtgcctggccTAAAATTT--CTTTTAACTGAATAATTTATCTTCCATTAGTATATGTGCTTCTCTCTGTGtttgtttttcgtt--tttggttttttgt-ttttttgagacggaatctcgctctgtcgcctagcctg-gagtgcagtggcgccatctcagctcactgcaagctccgcctcctgggtttacaccattctcctgtctcagcctcctgagtagctgggactacaggtgcccgccaccacgcccggctaattttttgtatttttttttagtagagacagggtttcactgtgttagccaggatgatctcga--tctcctgacctt--gtgatccacccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgtgcc-cggcGCTCTCTTTG------tttttat---tttatttttattatttattattatt--ttta-----------tttatttattta--tttttgagacagagtttcgttcttgttgcccaagctggagtgcaatgggcgctatctcagcccactgcaaactctgcctcctgcattcaagctattctcctgcctcagcctccgcagcagctgggattacaggcatgcaccaccatgcctggcta---------a-ctttgcagttttagtagagacgggatttctccatg
  1014. s hg18.chr22 16131964 701 + 49691432 ttggccaggctggtcttgaactcctgacctc--gtgatccacccacctcagcctcccaaagtgctgggattgcaggcatgagc--tactgcacctggccTAGAATTT--CTTTTAACTGAATAATTTATCTTCCATTAATACATGTGCTTCTATCCTTGTTTGtttttcgtt--tttgtttttttgt-ttttttgagacagaatctcgctctgtcgcctagcctg-gagtgcagtggcgccatctcggctcactgcaagctccgcctcccgggtttacaccattctcctgcctcagcctcctgagtagctgggactacaggtgcccgccaccacgcccggctaattttttgta-ttttttttagtagagacagggtttcactgtgttagccaggatggtctcaa--tctcctgacctc--gtgatccacccctctcggcctccgaaagtgctgggattacaggcgtgagccactgcgcc-cggccCTCTCTTTG------TTTTTA------------------TTtttattatt--ttta-----------tttatttattta--tttttgagacagagtttcgttcttgtcgcccaagctggagcgcaat-ggcgctctctcagcccactgcaacctctgcctccctcattcaagctattctcctgcctcagcctccagagcagctgggattacaggcatgcacgaccatgcctggcta---------a-ttttgcagttttagtagagatggggtttctccatg
  1015. i hg18.chr22 C 0 C 0
  1016. s panTro2.chr22 16148745 711 + 50165558 ttggccaggctggtcttgaactcctgacctc--gtgatccacccacctcagcctcccaaagtgctgggattgcaggcatgagc--tactgcacctggccTAGAATTT--CTTTTAACTGAATAATTTATCTTCCATTAATATATGTGCTTCTATCTTTGtttgtttttcgtt--tttggttttttgt-ttttttgagacagaatctcgctctgtcgcctagcctg-gagtgcagtggcgccatctcggctcactgcaagctccgcctcccgggtttacaccattctcctgcctcagcctcctgagtagctgggactacaggtgcccacgaccacgcccggctagttttttgta-ttttttttagtagagacagggtttcactgtgttagccaggatggtctcaa--tctcctgacctc--gtgatccacccctctcggcctccgaaagtgctgggattataggcgtgagccactgcgcc-cggccCTCTCTTTG------TTTTTA--------tttttattattttttattatt--ttta-----------tttatttattta--tttttgagacagagtttcgttcttgtcgcccaagctggagcgcaat-ggcgctatctcagcccactgcaacctctgcctccctcattcaagctattctcctgcctcagcctccagagcagctgggattacaggcatgcaccaccatgcctggcta---------a-ttttgcagttttagtagagatggggtttctccatg
  1017. i panTro2.chr22 C 0 C 0
  1018. s rheMac2.chr10 61935354 726 + 94855758 ttggtcaggctggtctcgaactctcaatctcaggtgatccgtctgcctctgcctcccaaagtgctggg-ttacaggcatggac--catcgtgcctggcCTCTCTCTTTGTTTTTAACTCCTTCATGGTTTTAC--TTAGTCTGGATGTCACAATTCAt-----ttatttgtt--tatg----------tttttagagtcagggtcttgctctgttgtccaagctg-gagtgcagtggtgtgatcatggctcactgcagccttgacctcccaggctcaagaaatcctcctgcctcagcctcctaagtggctgggactacaggcatgcaccaccatggt--accaaatttt-----acgtttttggtagagatggggccttgttgctttgcccaggctggtctcaaaccctcaggctcta--gctattctccgaccttgacctcccaaagt--tgcaattacagTTCTTATCCACCAAGATGTGATGATTTATTTAATGAATTCCTTATTGATTGATTTTTTTTTTTGATTGATATT--TTGGGTCCTCCTCACCttttttttttt--tttttgagacggagtctcgctc-tgtcgcccaggctggagtgcagt-ggccagatttcagctcactgcaagctccgcctcccgggtttatgccatcctcctgcctcagcctcccaggtagctgggactacagacgcccgccaccttgcccggctagttttttgta-tttttttgttttagtagagacggggtttcaccatg
  1019. i rheMac2.chr10 I 674 N 0
  1020. s calJac1.Contig13114 33032 705 + 38599 ttggccaggctagtctcgaactcctgacctcaggtgatccgcctgcctcggccccccaaagt-------------gcATGAGCCACACTGCACCCGGCGT----CTG--TTTTTAACTGCTTCAT-GGTTTAC--TTGGTCTGGATGTCATAATTAAT-----TAAtttgtttgtttgtttatttatatttttagagtcagggtctcactccgttgcccgggctgtgagtgcagtggtgtgatcatggttcactgcagcctcgacctcctgggctcaagagatcctcctgcctcagcttcctgagtggctgggactataggcatgtgccaccatgcc--agcacatttt-----atgtttttggtagagatgaggccttgttgctttgcccaggctggtctcga--actcccagcctcaagctagtcttccactttgacctcc-aaagt--TGCAATTACGGTTCTTACCCGCCTAGATGTGATGATTTAGTTAATGATTTCCTTATTGATAGATATTTTGGGTCCCCCtttatttattta-----------tttatttatttattttttttagatggagtcttgctc-tgttg-ccaggctggagtgcaat-ggcacagtttcagctcactgcaacctccacctcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattacagacacacgccaccacacccagcta---------atttttgtatttttagtagagacggggttacaccatg
  1021. i calJac1.Contig13114 C 0 C 0
  1022. a score=298890.0
  1023. s ponAbe2.chr22 13854383 461 + 46535552 ttggtcaggctggtctcgaactctcaatctcaggtgatccgcctgcctctgcctcccaaagtgttggggttacaggcgtgagccactgtgcctggccTCTCTCTTTGTTTTTAACTGCTTCATTGTTTTACTTAGTCTGGATGTCATAATTTAtttacttgtttgtttgtttatgtttttagagtcagggtcttgctctgttgtccaagctggagtgcagtggtgtgatcatggctcactgcagcctcgacctcccaggctcaagagatcctcctgcctcagcctcctaagtggctgggactacaggcatgcaccaccatgcc--accaaattttatgt-ttttggtagacatggggccttgctgctttgcccaggctggtctcaaaccctcagcctcaagctattctcacaccttagcctcccaaagt--tgcaattacagTTCTTATCCACCAGGATGTGATGA
  1024. s calJac1.Contig13114 33737 413 + 38599 ttggccaggatggtcttaatctcttgacctcc--tgatctgcccacctcagcttcccaaagtgatgggattacaggcatgagctaccttgccaggACCCtt-----------------------------------------------atttatttatttgtttgtttatttatttTCtt-gagatggagtttcattctgtca-ccaggctggagtacagtggcacaatctcggcttactgcaacctccaccccctgggttcaaacagttcccctgcctcagccccctgagtagctgggactacaaatgagctccaccacacccggctagtttttttgtattttaatagagacagagctttaccatgttggccaggaagatcttaatctcctgacctcatg--atctgcctgcctcaacctcccaaagtgctgggatcacaggtataagccgccacATACAGAGGA
  1025. i calJac1.Contig13114 C 0 C 0
  1026. s rheMac2.chr10 61935354 452 + 94855758 ttggtcaggctggtctcgaactctcaatctcaggtgatccgtctgcctctgcctcccaaagtgct-gggttacaggcatggaccatcgtgcctggcCTCTCTCTTTGTTTTTAACTCCTTCATGGTTTTACTTAGTCTGGATGTCACAATTCAttta--------tttgtttatgtttttagagtcagggtcttgctctgttgtccaagctggagtgcagtggtgtgatcatggctcactgcagccttgacctcccaggctcaagaaatcctcctgcctcagcctcctaagtggctgggactacaggcatgcaccaccatggt--accaaattttacgt-ttttggtagagatggggccttgttgctttgcccaggctggtctcaaaccctcaggctctagctattctccgaccttgacctcccaaagt--tgcaattacagTTCTTATCCACCAAGATGTGATGA
  1027. i rheMac2.chr10 N 0 C 0
  1028. s panTro2.chr22 16149456 461 + 50165558 ttggtgaggctggtctcgaactcccaatctcaggtgatccacccgcctctgcctcccaaagtgttggggttacaggcgtgagccaccgtgcctggccTCTCTCTTTGTTTTTAACTGCTTCATTGTTTTACTTAGTCTGGATGTCATAATTTAtttacttgtttgtttgtttatgtttttagagtcagggtcttgctctgttgtccaagctggagtgcagtggtgtgatcatggctcactgcagcctcgacctcccaggctcaagagatcctcctgcctcagcctcctaagtggctgggactataggcatgcaccaccatgcc--accaaattttatgt-ttttggtagagatggggccttgctgctttgcccaggctggtctcaaaccttcaacctcaagctattctcccaccttggcctcccaaagt--tgcaattacagTTCTTATCCACCAGGATGTGATGA
  1029. i panTro2.chr22 C 0 C 0
  1030. s hg18.chr22 16132665 459 + 49691432 ttggtgaggctggtctcgaactcccaatctcaggtgatccgcccgcctctgcctcccaaagtgttggggttacaggcgtgagccaccgtgcctggccTCTCTCTTTGTTTTTAACTGCTTCATTGTTTTACTTAGTCTGGATGTCATAATTTAtttacttgtttgtttgtttatgtttttagagtcagggtcttgctctgttgtccaagctggagtgcagtggtgtgatcatggctcactgcagcctcgacctcccaggctcaagagatcctcctgcctcagcctcctaagtggctgggactacaggcatgcaccaccatgcc--accaaattttatat-ttttggtagaga--gggccttgctgctttgcccaggctggtctcaaaccctcaacctcaagctattctcccaccttggcctcccaaagt--tgcaattacagTTCTTATCCACCAGGATGTGATGA
  1031. i hg18.chr22 C 0 C 0
  1032. a score=12907.0
  1033. s ponAbe2.chr22 13854844 38 + 46535552 TTTATTTAATGATTTCCTTA-----------------TTGATAGATATTTTGGGT
  1034. s hg18.chr22 16133124 38 + 49691432 TTTATTTAATGATTTCCTTA-----------------TTGATAGATATTTTGGGT
  1035. i hg18.chr22 C 0 C 0
  1036. s panTro2.chr22 16149917 38 + 50165558 TTTATTTAATGATTTCCTTA-----------------TTGATAGATATTTTGGGT
  1037. i panTro2.chr22 C 0 C 0
  1038. s rheMac2.chr10 61935806 55 + 94855758 TTTATTTAATGAATTCCTTATTGATTGATTTTTTTTTTTGATTGATATTTTGGGT
  1039. i rheMac2.chr10 C 0 I 314
  1040. s calJac1.Contig13114 34150 17 + 38599 CTGATTGACTGA-------------------------TTGAT-------------
  1041. i calJac1.Contig13114 C 0 C 0
  1042. a score=30291.0
  1043. s ponAbe2.chr22 13854882 70 + 46535552 CCCCCTTACCTTTTATTTATTTCTCCTTTTTTTTTTTTTTTTTGTGCTATTTTACCTTGGGTGACTTTTT
  1044. s calJac1.Contig13114 34167 26 + 38599 --------------------------------------------TGCTATTTTACCCTGGGTGACTTTTT
  1045. i calJac1.Contig13114 C 0 C 0
  1046. s rheMac2.chr10 61936175 65 + 94855758 CCTCCTCACCTTTTATTTATTTCTCTT-----TGTGTGTGTGTGTGCTATTTTACCTTGGGTGACTTTTT
  1047. i rheMac2.chr10 I 314 C 0
  1048. s panTro2.chr22 16149955 68 + 50165558 CCCCCTTACCTTTTATTTATTTCTCTC--TCTTTTTTTTTTTTGTGCTATTTTACCTAGGGTGACTTTTT
  1049. i panTro2.chr22 C 0 C 0
  1050. s hg18.chr22 16133162 64 + 49691432 CCCCCTTACCTTTTATTTATTTCTCTC------TTTTTTTTGTGTGCTATTTTACCTAGGGTTACTTTTT
  1051. i hg18.chr22 C 0 C 0
  1052. a score=30818.0
  1053. s ponAbe2.chr22 13854952 45 + 46535552 AATAAGGTGAACTTAAGGTGGGTTGGAGTTCAGA------TTTTTTTTTTT
  1054. s calJac1.Contig13114 34193 51 + 38599 AATGAGGTGAATTTAAGGTGGGTTGGATTTCAGATTACTATATTTTTTTGC
  1055. i calJac1.Contig13114 C 0 C 0
  1056. s rheMac2.chr10 61936240 50 + 94855758 AATAAGGTGAACTTAAGGTGGGCTGGATTTCAGATT-TTTTTTTTTTTTTT
  1057. i rheMac2.chr10 C 0 C 0
  1058. s panTro2.chr22 16150023 44 + 50165558 AATAAGGTGAACTTAAGGTGGGTTGGAGTTCAGA-------TTTTTTTTTT
  1059. i panTro2.chr22 C 0 C 0
  1060. s hg18.chr22 16133226 47 + 49691432 AATAAGGTGAACTTAAGGTGGGTTGGAGTTCAGA----TTTTTTTTTTTTT
  1061. i hg18.chr22 C 0 C 0
  1062. a score=59308.0
  1063. s ponAbe2.chr22 13854997 74 + 46535552 TTAGAAAACTTCCAACAGATAAAGATGAGGAACCCACTACTAATGATGTTGAATTTGTTTTTGTTTTTCTTGTA
  1064. s hg18.chr22 16133273 74 + 49691432 TTAGAAAACTTACAACAGATAAAGATGAGGAACCCACCACTAACGATGTTGAATTTGTTTTTGTTTTTCTTGTA
  1065. i hg18.chr22 C 0 C 0
  1066. s panTro2.chr22 16150067 74 + 50165558 TAAGAAAACTTTCAACAGATAAAGATGAGGAACCCACCACTAATGATGTTGAATTTGTTTTTGTTTTTCTTGTA
  1067. i panTro2.chr22 C 0 C 0
  1068. s rheMac2.chr10 61936290 56 + 94855758 TTGGAAAACTTTCAACAGATAAAGATGAGGAACCCGCCACTGATAATGTTGAATTT------------------
  1069. i rheMac2.chr10 C 0 I 379
  1070. s calJac1.Contig13114 34244 74 + 38599 TTAGAAAACTTTCAGCAGAGAAAGATGAGGACCCCACCACGGATAACGCTGAATTTGTTCTTGTTTTTCTTGTA
  1071. i calJac1.Contig13114 C 0 C 0
  1072. a score=335723.0
  1073. s ponAbe2.chr22 13855071 428 + 46535552 ATAAGTCCTATTTGGAACCTTGGCCCATTTGCTACTGGGCCAGCCCCCTCCTGCTAGGATGACCTTAGCCCCCTGGGCCAGCCCTGCTTCCCCAGTCCCCACCCACTGGTGCAGTGGTGATGAGACACCTCCCGCTGCTTCCTCTGAGCCCTCCTTCGACACTGATAGGCCGGGCTCACTCTTGCAGGGCTGGAATTTGCCAAGCTTGCCTCCCTCCCTCTGGGAATGAG----CACTCCCCACCCCTCCCC--CTTCATTTTCTCTGGAGCCTT-TGGGACAAACAACTCTCTAGGACGGAGCTACCTCCTAAGGGAGGCCCCTCTGGCCTCTTCCTTGGCATCTGTGACCACCTGCGTCTGCCACAGCTTCTCTGGTCCAGCCTGACCTGATGAGTCTATTTGTACTTCCTCACTGTCTTCTTTGAACCTTGA
  1074. s calJac1.Contig13114 34318 421 + 38599 CTAAGTCCTATGTGGAACCTTGGCCCCTTTGCTACTGGGCCAGCCCCTTCCTGGTAGAGTGACCTTAGCCCCTTGGGCCAGCCCAACTGCCCCAGTTCCCACCCTCTGGTG-GCTAGTAATGAGGCACACCCCTGTGCTTCCCCTGAGGCCT---------CTGATAGGTTGGGCTCACCCTTGCAGGGCTGGAATCTGCCCAGCTTGCC-CCCTCCCTCGGGGAATGGGGCAACCCCCCCCACCCGTCCCCCTCTCTGTTTTCTCCGGAGCCCCATGAGACAAACAGCTAT-TGGGACGGAGCTGCCTCCTGGGGGAGGCCCTGC-AGCCTCTTTCCCGGTATCTGTG-CCTCCTGCATCTGCCGCAGCTTCTGTGGTCCAGCCTGACCTGATGTGTCTATTTGTACTTCCTCACTGTCTTCTTTGAATCTTGA
  1075. i calJac1.Contig13114 C 0 I 444
  1076. s rheMac2.chr10 61936725 430 + 94855758 ATAAGTCCTATTTGGAAACTTGGCCCATTTGCCACTGGGCCAGCGCCCTCCTGCTAGGATGACCTTACCCCCCTGGGCCAGCCCTGCTTCCCCAGTCACCACCCCCTGGTGCAGTGGTGATGAGACACCTCCCTCTGCTTCCTCTGAGCCCTCCTTCGACACTGATAGGCCGGGCTCACCCTTGCAGGGCTGGAAATCGCCAAGCTTGCCTCCCTCCCTCTGGGGATAAG----CACTCTCCACCCCTCCCCCTCTTCATTTTCTCTAGAGCTCT-TGGAACAAACAACTGTCTAGGATGGAGCTACCTCCTAAGGGAGGCCCCGCCGGCCTCTTCCCTGGCATCTGTGACCACCTGCGCCTGCCACAGCTTCTCTGGTCCAGCCTGACCTGATGCGTCTATTTGTACTTCCTCATTGTCTTCTTTGAACCTTGA
  1077. i rheMac2.chr10 I 379 C 0
  1078. s panTro2.chr22 16150141 428 + 50165558 ATAAGTCCTATTTGGAACCTTGGCCCATTTGCTACTGGGCCAGCCCCCTCCTGCTAGGATGACCTTAGCCCCCTGGGCCAGCCCTGCTTCCCCAGTCCCTACCCCCTGGTGCAGTGGTGATGAGACACCTCCCTCTGCTTCCTCTGAGCCCTCCTTCAACACTGATAGGCTGGGCTCATCCTTGCAGGGCTGGAATTTGCCAAGCTTGCCTCCCTCCCTCTGGGAATGAG----CACTCCCCACCCCTCCCC--CTTCATTTTCTCTGGAGCCTT-TGGGACAAACAACTCTCTAGGACGGAGCTACCTCCTAAGGGAGGCTCCTCTGGCCTCTTCCCTGGCATCTGTGACCACCTGCGTCTGCCACAGCTTCTCTGGTCCAGCCTGACCTGATGAGTCTATTTGTACTTCCTCACTGTCTTTTTTGAACCTTGA
  1079. i panTro2.chr22 C 0 C 0
  1080. s hg18.chr22 16133347 428 + 49691432 ATAAGTCCTATTTGGAACCTTGGCCCATTTGCTACTGGGCCAGCCCCCTCCTGCTAGGATGACCTTAGCCCCCTGGGCCAGCCCTGCTTCCCCAGTCCCTACCCCCTGGTGCAGTGGTGATGAGACACCTCCCTCTGCTTCCTCTGAGCCCTCCTTCGACACTGATAGGCCGGGCTCACCCTTGCAGGGCTGGAATTTGCCAAGCTTGCCTCCCTCCCTCTGGGAATGAG----CACTCCCCACCCCTCCCC--CTTCATTTTCTCTGGAGCCTT-TGGGACAAACAACTCTCTAGGACGGAGCTACCTCCTAAGGGAGGCCCCTCTGGCCTCTTCCCTGGCATCTGTGACCACCTGCGTCTGCCACAGCTTCTCTGGTCCAGCCTGACCTGATGAGTCTATTTGTACTTCCTCACTGTCTTCTTTGAACCTTGA
  1081. i hg18.chr22 C 0 C 0
  1082. a score=67790.0
  1083. s ponAbe2.chr22 13855499 79 + 46535552 TTTCTGAGGACGTTTCCAATCCCACCCCCAGCCAGAGTCCTTCC-------GTTCTCTCCTGATGTTTCTCCCCAGCTCAGGGCCT
  1084. s calJac1.Contig13114 35183 72 + 38599 TTTTTAAGGAAGTTTCCAATCCCACCTCCAGCCAGAGCCCCTCCC------GACCT----TGAC----CTCCCCAACTCTGGGCCT
  1085. i calJac1.Contig13114 I 444 C 0
  1086. s rheMac2.chr10 61937155 86 + 94855758 TTTTTGAGGAAGTTTCCAATCCCACCCCCAGCCAGAGTCCCTCCTGTTCTCGCTCTCTCCTGACGTTTCTCCCCAGCTCAGGGCCT
  1087. i rheMac2.chr10 C 0 C 0
  1088. s panTro2.chr22 16150569 80 + 50165558 TTTCTGAGGAAGTTTCCAATCCCACCCCCAGCCAGAGTCCTTCCT------GTTCTCTCCTGATGTTTCTCCCCAGCTCGGGGCCT
  1089. i panTro2.chr22 C 0 C 0
  1090. s hg18.chr22 16133775 80 + 49691432 TTTCTGAGGAAGTTTCCAATCCCACCCCCAGCCAGAGTCCTTCCT------GTTCTCTCATGATGTTTCTCCCCAGCTCAGGGCCT
  1091. i hg18.chr22 C 0 C 0
  1092. a score=453591.0
  1093. s ponAbe2.chr22 13855578 447 + 46535552 TTTGTTTTCCACCCCAACCCTCCCTGCAGGTTTGTCCCACTTTGCCAGGAGCTCTCCAGCCCAGCAGCCTCTCCTCTTACTAATCTCTTTTCTAAACGCTGTCTTCTGTAGCCGGGTCTACCCAACAGAAAGTGAAGAAGGTTGGCAATTATCTAATGAGTCCACACAATGTAGACAGCCAATTAAAATATCCTTGAGACAACCAATCCCCTTCACTTTGTTGAAAGCTGAACTCCAGTGAGGCCTGCCCCTGACAAAATCTGTCACACCATCTAGATGATTGGGGTGACAAGAACCGATGTTTATCTAACTAGCAAGTGAGAATTTCAGCTTTCTCTAGGTCTGGCTGCCATCTCTCCAAATAAAGGATAGTCCAATGTACCCACAAACAAATAAACAAAACAAAAGAGAAAACACACACCACAAAAACTACTTTCTTAGTGTAGG
  1094. s hg18.chr22 16133855 447 + 49691432 TTTGTTTTCCACCCCAACCCTCCCTGCAAGTTTGTCCCCCTTTGCCAGGAGCTCTCCAGCCCAGCAGCCTCTCTTCTTACTAATCTCTTTTCCAAACGCTGTCTTCTGTAGCCAGGTCTACCCAACAGAAAGTGAAGAAGGTTGGCAATTATCTAATGAGTCCACACAATGTAGACAGCCAATTAAAATATCCTTGACACAACCAATCCCCTCCGCTTTGTTGAAAGCTGAACTCCAGTGAGGCCTGCCCCTGACAAAATCTGTCACACAATCTAGATGATTGGGGTGACAAGAACCGATGTTTATCTAACTAGCAAGTGAGAATTTCAGCTTTCTCTAGGTCTGGCTGCCATCTCTCCAAATAAAGGATAGTCCAATGTACCCACAAACAAATAAACGAAACAAAAGAGAAAACACACACCACAAAAACTGCTTTCTTAGAGTTGG
  1095. i hg18.chr22 C 0 C 0
  1096. s panTro2.chr22 16150649 447 + 50165558 TTTGTTCTCCACCCCAACCCTCCCTGCAAGTTTGTCCCCCTTTGCCAGGAGCTCTCCAGCCCAGCAGCCTCTCCTCTTACTAATCTCTTTTCCAAACGCTGTCTTCTGTAGCCAGGTCTACCCAACAGAAAGTGAAGAAGGTTGGCAATTATCTAATGAGTCCACACAATGTAGACAGCCAATTAAAATATCCTTGACACAACCAATCCCCTCCGCTTTGTTGAAAGCTGAACTCCAGTGAGGCCTGCCCCTGACAAAATCTGTCACACAATCTAGATGATTGGGGTGACAAGAACCGATGTTTATCTAACTAGCAAGTGAGAATTTCAGCTTTCTCTAGGTCTGGCTGCCATCTCTCCAAATAAAGGATAGTCCAATGTACCCACAAACAAATAAACGAAACAAAAGAGAAAACACACACCACAAAAACTGCTTTCTTAGAGTTGG
  1097. i panTro2.chr22 C 0 C 0
  1098. s rheMac2.chr10 61937241 442 + 94855758 TTTGTTTTCCACCCCAACCCTCCCTGCAGGTTTGTCCCCCTTTGCCAGGAGCTCTCCAGCCCGGCGGCCTCTCCTCTTACTAATCTCCTTTCCAAACGCTGTCTTCTGTAGCCAGGTCTACCCAACAGAAAATGAAGAAGGTTGGCAATTATCTAATGAGTTCACACAATGTAGACAGCCAATTAAAATATCCTTGACACAGCCAATCCCCTCCGCTTTGTTGAAAGCTGAACTCCAATGAGGCCTGTCCCTGACAAAATCTGTCACACCATCTAGATGATTGGGGTGACAAGAACCGATGTTTATCTAACTAGCAAGTGAGAATTTCAGCCTTGCATAGTTCTGGCTACCATCTCTCCAAATAAAGGATAGTCAAATGTACCCACAAACAAAT-----TAACAAAAGAGAAAACACACACCACAAAAACTACTTTCTTAGAGTTGG
  1099. i rheMac2.chr10 C 0 C 0
  1100. s calJac1.Contig13114 35255 429 + 38599 TTTGTCTTCCATGCCAACCCTCCCTGCAGGTTCCTCCCCCTCGGCCAGGAGCTCTCCAGCCCAGCAGCCTCTCCTCTTACTAATCTCGTTTCCAAACGCTGTCTTCTGTAGCTAGGTCTGCACAACGGAAAGTGAAGAAGGTTGGTAATTACCTAATGAGCCCATACAATGCAGACAGCCTATTAAAATATCCTTGACACAACAAATCCCCTCCCCTTTGTTGAAAGCTGAACTCCAACGAGGCCTGCCCCTCACAAAATCTGTCACTTCATCTAGATGATTGGGGTGAAGAGAACCCATGTTTATCCAACTAGCAAGTGAGAATTTCGGCTTTCTCTAGGTCTGGCTGCTATCTCTCCAAATAAACGATACTCAAAGGTACCCATAAACA--------AAACAAAAGAGAAA--ACACGCCACAAAAACTACTTTTTT--------
  1101. i calJac1.Contig13114 C 0 C 0
  1102. a score=33140.0
  1103. s ponAbe2.chr22 13856025 80 + 46535552 TGTCTAATTGTGAACTGAAATCCACCCTCAAAATAGGAATTTCTGCGGAAGGTACTGTTTTTGTGGTGACTGAAATCCCA
  1104. s hg18.chr22 16134302 80 + 49691432 TGTCTAATTGTGAACTGAAGTCCACCCTCAAAATAGGAATTTCTGTGGAAGGTACTGTTTTTGTGGTGACTCGAATCCCA
  1105. i hg18.chr22 C 0 C 0
  1106. s panTro2.chr22 16151096 80 + 50165558 TGTCTAATTGTGAACTGAAGTCCACCCTCAAAATACGAATTTCTGGGGAAGGTACTGTTTTTGTGGTGACTCGAATCCCA
  1107. i panTro2.chr22 C 0 C 0
  1108. s rheMac2.chr10 61937683 80 + 94855758 TGTCTAATTGTGAACTGAAATCCACCCTCAAAATAGGGATTTCTGTGGAAGGTACTGTTTTTGTGGTAACTCGAATCCCA
  1109. i rheMac2.chr10 C 0 C 0
  1110. s calJac1.Contig13114 35684 30 + 38599 --TTT---------------TTCTTTCTTAAAGACGGGGTTTCTgcg---------------------------------
  1111. i calJac1.Contig13114 C 0 C 0
  1112. a score=110055.0
  1113. s ponAbe2.chr22 13856105 146 + 46535552 GCGTTCTATCTGTAGGAGCACCCTGGTGCAAAACACAGTGCACAGTGGAGTGCTGTAGCTTTCGCGTCTCCAGGGACTTTGATGTCCCTCCCTCTTGCCTTGTTGAAAAATTCAAACTAGAAGAATCCTATGAAATAAAATGCAAT
  1114. s hg18.chr22 16134382 146 + 49691432 GCGTTCTATCTGTAGGTGCACCCTGGTGCAAAACACAGTGCACAGTGGAGTGCTGTAGCTTTCGCGTCTCCAGGGACTTTGACGTCCCTCCCTCTTGCCTTGTTGAAAAATTCAAACTAGAAGAATCCTATGAAATAAAATGCAAT
  1115. i hg18.chr22 C 0 C 0
  1116. s panTro2.chr22 16151176 146 + 50165558 GCGTTCTATCTGTAGGTGCACCCTGGTGCAAAACACAGTGCACAGTGGAGTGCTGTAGCTTTCGCGTCTCCAGGGACTTTGACGTCCCTCCCTCTTGCCTTGTTGAAAAATTCAAACTAGAAGAATCCTATGAAATAAAATACAAT
  1117. i panTro2.chr22 C 0 C 0
  1118. s rheMac2.chr10 61937763 144 + 94855758 TTGTTCTATCTGTAGGTGCACCCTGGTGCAAAACAC--TGCACAATGGACTGCTGTAGCTTTCGCATCTCCAGGGACCTTGATGTCCCTCCCTCTTGCCTTGTTGAAAAATTCAAACTAGAAAAATCCTATGAAATAAAATGCAAT
  1119. i rheMac2.chr10 C 0 C 0
  1120. s calJac1.Contig20527 6896 133 + 9819 GCTTTCTATCTCTAGGCGTGCCCTTGTGCAAAACACAGTGCACAGCGGGGTGCTGTAGCTTTT-CAACTCCAGAGACCTTGGCGTCCCTTCCTCTTGCCTTGTTGAAAAATTCAAACTGTAAGAATCTTA------------CAAT
  1121. i calJac1.Contig20527 n 0 I 144
  1122. a score=38795.0
  1123. s ponAbe2.chr22 13856251 49 + 46535552 TAATAAGCACTCTTTAGGTGTTTAGGG--CTGGTTAAAGACAGAAGCTAGg
  1124. s hg18.chr22 16134528 49 + 49691432 TAATAAGCACTCTTTAGGTGTTTAGGG--TTGGTTAAAGACAGAAGCCAGg
  1125. i hg18.chr22 C 0 C 0
  1126. s panTro2.chr22 16151322 49 + 50165558 TAATAAGCACTCTTCAGGTGTTTAGGG--CTGGTTAAAGACAGAAGCCAGg
  1127. i panTro2.chr22 C 0 C 0
  1128. s rheMac2.chr10 61937907 49 + 94855758 TAATAAGCACTCTTTAGGTGTTTAGGA--CTGGTTAAAGACAGAAGCTAGg
  1129. i rheMac2.chr10 C 0 C 0
  1130. s calJac1.Contig19362 1845 49 + 9821 TAATAAGCACTCTTTAGGTGTTTAGGGCTCTGTTTAAAGACAGAAGCTA--
  1131. i calJac1.Contig19362 n 144 n 144
  1132. a score=120282.0
  1133. s ponAbe2.chr22 13856300 140 + 46535552 gccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacctgaggtcagaagttcgagaccagcctgatcaacatggagaaaccctgtctctactaaaaatagaaaatta--gccagg
  1134. s hg18.chr22 16134577 140 + 49691432 gccggacgcggtggctcacacctgtaatcccagcattttgggagaccaaggcaggcagatcacctgaggtcaggagttcgagaccagcctgatcaacatggagaaaccctgtctctactaaaagcagaaaatta--gctggg
  1135. i hg18.chr22 C 0 C 0
  1136. s panTro2.chr22 16151371 140 + 50165558 gccggacgcggtggctcacacctgtaatcccagcattttgggagaccgaggcaggcagatcacctgaggtcgggagttcgagaccagcctgatcaacatggagaaacactgtctctactaaaaatagaaaatta--gccggg
  1137. i panTro2.chr22 C 0 C 0
  1138. s rheMac2.chr10 61937956 140 + 94855758 gctgggcacgatggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacctgaagtcaggagtttgagaccagcctgatcaacatggagaaaccctgtctctactaaaagtagaaaatta--gctggg
  1139. i rheMac2.chr10 C 0 C 0
  1140. s calJac1.Contig13114 35714 137 + 38599 ---gggcacggtggctcacgcctgtaatcctagcactttgggaggccgaggtaggtggatcacctgaggtcaggagttcaagaccatcctgggcatcatggtgaaaccccatctttaa-aaaagaaaaaaattaaggccgg-
  1141. i calJac1.Contig13114 C 0 I 1851
  1142. a score=24750.0
  1143. s ponAbe2.chr22 13856440 43 + 46535552 cgtggtggtgcatgcctgtaattccagcaacttgggaggctga
  1144. s hg18.chr22 16134717 43 + 49691432 cgtggtggtgcatgcctgtaattccagcaacttgggaggctga
  1145. i hg18.chr22 C 0 C 0
  1146. s panTro2.chr22 16151511 43 + 50165558 cgtggtggtgcatgcttgtaattccagcaacttgggaggctga
  1147. i panTro2.chr22 C 0 C 0
  1148. s rheMac2.chr10 61938096 43 + 94855758 tgtggtggtgcatgcctgtaatctcagatactcgggaggctaa
  1149. i rheMac2.chr10 C 0 C 0
  1150. s calJac1.Contig20527 7173 42 + 9819 cttagtggcacgcgcatgagaccccaactaatc-acaggctga
  1151. i calJac1.Contig20527 I 144 I 340
  1152. a score=75450.0
  1153. s ponAbe2.chr22 13856483 113 + 46535552 ggcaagggaatcgcttgaacccgggaggcagaggttgaggtgagccaagatcgcaccattgcgctccagcctgggaa--acaagagcaaaactctgtctcgaaaaaaaaaaaaaa
  1154. s hg18.chr22 16134760 111 + 49691432 ggcaagagaatcacttgaacctgggaggcggaggttgcggtgagccaagatcacaccattgcactccagcctgggaaagacaagaacaaaactctgtctcgaaaaaaaaaa----
  1155. i hg18.chr22 C 0 C 0
  1156. s panTro2.chr22 16151554 108 + 50165558 ggcaagagaatcacttgaacctgggaggcggaggttgcggtgagccaagatcacaccattgcactccagcctgggaaagacaagaacaaaactctgtctcgaaaaaaa-------
  1157. i panTro2.chr22 C 0 C 0
  1158. s rheMac2.chr10 61938139 110 + 94855758 ggcaggagtatcgcttgaacctgggaggcagaggttgcagtgagccgagattgcaccattgcactccagcctggtaa--acaagagcaaaactctgtctcaaaaa---aaaaaaa
  1159. i rheMac2.chr10 C 0 C 0
  1160. s calJac1.Contig19362 1709 111 + 9821 ggcgaaagaatcacttgaacctgggaggcggaggttacagtgtgccaagatcatgccactgcactccagcctggtga----cagagcaagactccgtttcaaaaaaaaaaaaaaa
  1161. i calJac1.Contig19362 n 340 I 1696
  1162. a score=165147.0
  1163. s ponAbe2.chr22 13865552 280 + 46535552 agatggagtttt--gctcttgtcgcccaggctggagtgcaatggcgcgatcttggctcaccacaacctccgcctcttggattcaaggaa---ttctgcctcagcctcctgagtagctgggattacaggcacgtgcca----------ccacgcccggctaattttgtatttttagtagagacgggagtttctccatgttggtcaggctggtctcgaactcgcaacctcaggtgatccgcccgcctcagcctcctaaggtactgggattacagacgtgagccaccacgcctggctT
  1164. s hg18.chr22 16139692 283 + 49691432 agatggagtttt--gctctcgttgcccaggctggagtgcaatggcacgatcttggctcactgcaacctccacctcctgggttcaagcaattcttctgcctcagcctcctgagtagctgggattacaggcacgcgcca----------ccacgcccggctaattttgtatttttagtagagacaggagtttctccatgttggtcacgctggtctcgaacttgcaacctcaggtgatccgcctgcctcagcctcctaaagtgctgggattacagacgtgacccactgcgcctggctT
  1165. i hg18.chr22 C 0 C 0
  1166. s panTro2.chr22 16160102 283 + 50165558 agatggagtttt--gctcttgtcgcccaggctggagtgcaatggcacaatcttggctcactgcaacctccgcctcctgggttcaagcaattcttctgcctcagcctcctgagtagctgggattacaggcacgcgcca----------ccgcgcccggctaattttgtatttttagtagagacgggagtttctccatgttggtcaggctggtctcgaacttgcaacctcaggtgatccgcctgcctcagcctcctaaagtgctgggattacagatgtgagccactgcgcctggctT
  1167. i panTro2.chr22 C 0 C 0
  1168. s rheMac2.chr10 61946865 282 + 94855758 agatagagtttt--gttcttgttgcccaggctgctgtgcaatggcaggatcttggcttactgcaagctccgcctcctgggttcaagcaattcttctgcctcagcctcccgagtagctaggattacaggcatgtgcca----------ccacgcctggctaattttgtatttttagtagagtcagg-gtttctctatgtcggtcaggctggtctcgatctcgagacctcaggtgatccgccctcctcggcctcccagagtgctgggattacacctgtaagccaccgcacatggctT
  1169. i rheMac2.chr10 C 0 I 322
  1170. s calJac1.Contig12391 2 261 + 45167 AGATGGGGTTTTAAACCCATGTTGGCCAGGCTGC-------------------------------Tctcaaactcctaacctcaagtgatccgactgtctcggcctccaaaactgctgggattataggcgtgagccacagcacacagccacattcggctactttttaattttgttgagagatggg-atcttgctatgttgccca-gctggtctcaaactcctgggctcaagtgatcctcctgccttagcctcccacagggctggggctgtgggtaagagccaccCTGTC-GGCAG
  1171. i calJac1.Contig12391 n 327 C 0
  1172. a score=46779.0
  1173. s ponAbe2.chr22 13865832 99 + 46535552 ACTCTGCTTTCTTTAGCTCCTTTCCCTTCCCTTGCTCTTTGCCCTGGTCCTGAGGAAATTTTCCGGAATGGAGGCTGCTTACTCTG--TAGCATTTTTCCT
  1174. s hg18.chr22 16139975 99 + 49691432 ACTCTGCTTTCTTTAGCTCCTTTCCCTTCCCTTGCTCTTTGCACTGGTCCTGAGGAAATTTTCCGGAATGGAGGCTGCTTACGCTG--TAGCATTTTTCCT
  1175. i hg18.chr22 C 0 C 0
  1176. s panTro2.chr22 16160385 99 + 50165558 ACTCTGCTTTCTTTAGCTCCTTTCCCTTCCCTTGCTCTTTGCACTGGTCCTGAGGAAATTTTCCGGAATGGAGGCTGCTTACGCTG--TAGCATTTTTCCT
  1177. i panTro2.chr22 C 0 C 0
  1178. s rheMac2.chr10 61947469 94 + 94855758 ACTCTGCTTTCTTTAGCTCCTTTCTCTTCCCTTGCTCTTTGCACTGGCCCTGAGCAAATTTTCTGGAATGGAAGCTGCTTATTCTG--TAGCATTT-----
  1179. i rheMac2.chr10 I 322 I 5
  1180. s calJac1.Contig12391 263 56 + 45167 -ATCCACATTTTTTTTTTATTTTACTTT--------------------------------------------AGGTGCATActatatctggcatttttccc
  1181. i calJac1.Contig12391 C 0 I 518
  1182. a score=102128.0
  1183. s ponAbe2.chr22 13866427 152 + 46535552 CCACTTCTggccaggcacggtggctcacatctctcacatctgtaatcccagcagttttggaggctgaagtgggaggaccaattgaggccaggagtttgagaccagccttggcaacatggtgaaaccttgtctctactaaa---------aatacaaaaatc
  1184. s hg18.chr22 16140571 152 + 49691432 CCACTTCTggccgggcacggtggctcacatctgtcacatctgtaatcctagcacttttggaagctgaagtgggaggaccaattgaggccaggagtttgagaccagccctggcaacatggtgaaaccttgtctctactaaa---------aatacaaaaatc
  1185. i hg18.chr22 C 0 I 419
  1186. s panTro2.chr22 16160932 152 + 50165558 CCACTTCTggccgggcacggtggctcacatctgtcacatctgtaatcccagcacttttggaagctgaagtgggaggaccaattgaggccaggagtttgagaccagccttggcaacatggtgaaaccttgtctctactaaa---------aatacaaaaatc
  1187. i panTro2.chr22 C 0 I 419
  1188. s rheMac2.chr10 61948011 143 + 94855758 CCACTTCTggtcgggcacggttac---------tcacgtctgtaatcccagcactttgggaggctgaagtgggaggaccaattcaggccaggagtttgagaccagccttggcaacatggtgaaaccttgtctctactaaa---------aatacaaaaatc
  1189. i rheMac2.chr10 C 0 C 0
  1190. s calJac1.Contig12391 837 151 + 45167 ctattATTggtcaggtgtggtggc---------tcacacctgtaatcctagcactttgggaggccaaggtgggtggatcacctgaggtcaggagttcaagaccagcctgaccatgatggtgaaatcccatcttt-ctaaaTAAATAAATAATAAAAAAAGA
  1191. i calJac1.Contig12391 I 518 C 0
  1192. a score=15397.0
  1193. s ponAbe2.chr22 13866579 46 + 46535552 agctgggcatggtggcgggcacctgtaattccagttactcgggagg
  1194. s hg18.chr22 16141142 46 + 49691432 agctgggcatggtggtgggcacctgtaattccacttactcgggagg
  1195. i hg18.chr22 I 419 C 0
  1196. s panTro2.chr22 16161503 46 + 50165558 agctgggcatggtggcgggcacctgtaattccacttactcgggagg
  1197. i panTro2.chr22 I 419 C 0
  1198. s rheMac2.chr10 61948154 46 + 94855758 agctgggcatggtggtttttgtctgtgatcccagctactagggagg
  1199. i rheMac2.chr10 C 0 I 404
  1200. s calJac1.Contig12391 988 8 + 45167 AGTTGGAG--------------------------------------
  1201. i calJac1.Contig12391 C 0 C 0
  1202. a score=68121.0
  1203. s ponAbe2.chr22 13866625 144 + 46535552 ttgaggcaggagaatcacttgaacccgggaggcggaggttgcagtgagctgagatcgcgccactgcaccccagcctgggggacaaaagggaaactctgtttc-------aaaaaaaaaaaaaaTCTTCTTCAATGGAA---TTTTTTTTTTTAA
  1204. s hg18.chr22 16141188 144 + 49691432 ttgaggcaggagactcacttgaacctgggaggcagaggttgcagtgagctgagatcatgccactgcactccagcctaggggacaaaagggaaactccgtttc------aaaaaaaaaaaaaaaTCTTCTTCAATGGAA----TTTTTTTTTTAA
  1205. i hg18.chr22 C 0 C 0
  1206. s panTro2.chr22 16161549 147 + 50165558 ttgaggcaggagactcacttgaacctgggaggcagaggttgcagtgagctgagatcatgccactgcactccagcctaggggacaaaagggaaactccgtttcaaa---aaaaaaaaaaaaaaaaCTTCTTCAATGGAA----TTTTTTTTTTAA
  1207. i panTro2.chr22 C 0 C 0
  1208. s rheMac2.chr10 61948604 154 + 94855758 ctgaggcaggagaatcacttgaacctgggaggcggaggttgcagtgagctgagatcgtgccactgcactccagcctgggggacaagagggaaactccgtttcaaaaacaaaacaaaacaaaaaaaaTCTTCAATGAATTTTTTTTTTTTTTTAA
  1209. i rheMac2.chr10 I 404 I 311
  1210. s calJac1.Contig12391 996 72 + 45167 TTGAAGCAAAGAA-------GGACCCAGGAAG----------------------------------------------------AAAG--------------------AAAAAATAAAAAGAATCTTCTTCAATGGAA--TTTTTTTTTTTTA-
  1211. i calJac1.Contig12391 C 0 C 0
  1212. a score=107900.0
  1213. s ponAbe2.chr22 13866769 130 + 46535552 GAAACTTGGTTTCATTTTCCATTAAGGTGAAAGCTAACATCTGGGTTCAATTCAGTTCTTAGCCTACACATTCTTGCTTTCTTTCTGTCTTGTCTGCTGTTTTGAGGTGTTTTAGACATTGCTGAGTTTA
  1214. s hg18.chr22 16141332 130 + 49691432 GAAACTTGGTTTCATTTTCCATTAAGGTGAAAGCTAACATCTGGGTTCAATTCAGTTCTTAACCTACACATTCTTGCTTTCTTTCTGTCTTGCCTGCTGTTTTGAGGTGTTTTAGACATTGATGAGTTTA
  1215. i hg18.chr22 C 0 N 0
  1216. s panTro2.chr22 16161696 130 + 50165558 GAAACTTGGTTTCATTTTCCATTAAGGTGAAAGCTAACATCTGGGTTCAATTCAGTTCTTAACCTACACATTCTTGCTTTCTTTCTGTCTTGTCTGCTGTTTTGAGGTGTTTTAGACATTGATGAGTTTA
  1217. i panTro2.chr22 C 0 N 0
  1218. s rheMac2.chr10 61949069 130 + 94855758 gaaaCTTGGTTTCATTTTCCATTACGGTGAAAGCTAACATCTGGGTTCAATTCAGTTCTTGGCCTACACATTCTTGCTTTCTTTCTGTTTTGTCTGCTATTTTGAGGTGTTTTAGACATTGCTAAGTTTA
  1219. i rheMac2.chr10 I 311 N 0
  1220. s calJac1.Contig12391 1068 129 + 45167 GAAACTTGGTTTCATTTTCCGTTAAGGTGAAAGCTGACATATGGGTTCGGTTCAGTTCTTAGCCTACACGTGGTTGTTTTCTTTCTGTCTTGTCTGCTGTGTTGAGGTGTTTTAGACATTGCTGCGTTT-
  1221. i calJac1.Contig12391 C 0 I 1717
  1222. a score=24265.0
  1223. s ponAbe2.chr22 13871583 48 + 46535552 CAAAGT--TACGATGTCAGG--TCAG-TGCTGTAG-TGCCTAGAACTTTATGGA
  1224. s hg18.chr22 16145433 51 + 49691432 CAAAGT--TACAATGTCAGGT-TCAGTTGCTGTAGTTGCCTAGAACTTTATGGA
  1225. i hg18.chr22 C 0 C 0
  1226. s panTro2.chr22 16165832 51 + 50165558 CAAAGT--TACAATGTCAGGT-TCAGTTGCTGTAGTTGCCTAGAACTTTATGGA
  1227. i panTro2.chr22 C 0 C 0
  1228. s rheMac2.chr10 61953588 51 + 94855758 CAAAGT--TACAATGTCAGGT-TCAGTTGCTGTGGTTGCCTAGAACTTTACGGA
  1229. i rheMac2.chr10 C 0 C 0
  1230. s calJac1.Contig19362 3516 52 + 9821 caaagtgctgggattacaggcgtgagccactgcacctggc--AAACTTTGTGGT
  1231. i calJac1.Contig19362 I 1696 n 1717
  1232. a score=64675.0
  1233. s ponAbe2.chr22 13871979 90 + 46535552 CAGAGCTCCAAGACGCCCATGTTACATGATGGGTGAGCATCTGTAGTTTCCTTCCTCTTAGTCCCTGTGGAAAAAACCTCGATCCAGAAG
  1234. s hg18.chr22 16145833 90 + 49691432 CAGAGCTGCAAGACGCCCATGTTACATGATGGGTGAGCATCTGTAGTTTCCTTCCTCTTAGTCCCTGTGGAAACAGCCTCGATCCAGAAG
  1235. i hg18.chr22 C 0 C 0
  1236. s panTro2.chr22 16166232 90 + 50165558 CAGAGCTGCAAGACGCCCATGTTACATGATGGGTGAGCATCTGTAGTTTCCTTCCTCTTAGTCCCTGTGGAAACAGCCTCGATCCAGAAG
  1237. i panTro2.chr22 C 0 C 0
  1238. s rheMac2.chr10 61953990 90 + 94855758 GAGAGCTCCAAGACGCCCATGTTACATGATGGGTGAGCATCTGTGGTTTCCTTCCTCTTAGTCCCTGTGGAAAAAGCCTTGATCCAGAAG
  1239. i rheMac2.chr10 C 0 C 0
  1240. s calJac1.Contig11249 6 83 + 53326 CAGAGCTCCGAGG-ACATATGT----GGATGGCTGAGCATCTGCAG-TTCTTTCTGCTTAGTCCCTGTGGAAAAAG-CTCAATCCAGACA
  1241. i calJac1.Contig11249 n 1717 I 215
  1242. a score=187307.0
  1243. s ponAbe2.chr22 13872069 214 + 46535552 GAGAAGGACTGCTCTTGGTGCATGGGTGGGTGAAGGCTGAACTCTGGGGAAGGAGCTGAGGCTTGAAGGAGAGGCACTGCGGCCAGGGCACACACAGGAAATGAAGGGACTCAGATAGGATGAAGGGTTTCAGGTGACTTTTCACGTTGAGGACAGAGCTGGTCAAGAAAACTACAAATCAACACT-----------------CCTAGGCTCCTAACATTACTGGGAGACC
  1244. s hg18.chr22 16145923 214 + 49691432 GAGAAGGACTGCTCTTGGTGCATGGGTGGGTGAAGGCTGAACTCTGAGGAAGCAGCTGAGGCTTGAAGGAGAGGCTCTGCGGCCAGGGCGCACGCAGGAAATGAAGGGACTCAGATAGGATGAAGGGTTTCAGGTGACTTTTCATGTTGAGCACAGAGCTGGTCAAGAAAACTACAAATCAACACT-----------------CCTAGTCTCCTAACATTACTGGGAGACC
  1245. i hg18.chr22 C 0 C 0
  1246. s panTro2.chr22 16166322 205 + 50165558 GAGAAGGACTGCTCTTGGTGCATGGGTGGGTGAAGGCTGAACTCTGAGGAAGCAGCTGAGGCTTGAAGGAGAGGCTCTGCGGCCAGGGCGCATGCAGGAAATGAAGGGACTCAGATAGGATGAAGGGTTTCAGGTGACTTTTCATGTTGAGCACAGAGCTGGTCAAGAAAACTACAAATCAACACT-----------------CCTAGCCTCCTAACATTA---------C
  1247. i panTro2.chr22 C 0 C 0
  1248. s rheMac2.chr10 61954080 214 + 94855758 GAGAGGGCGCGCTCTTGGTGCATGGGTGGGTGAAGGCTGAACTCTGGGGAAGCAGCTGAGGCTTGAAGGAGAGGCTCTGCGGCCAGGGCACGCGCAGGAAATGAAGGAACTCAGATAGGATGAAGGGTTTCAGGTGACTTTTCATGTTGAGCACAGACCTGGTCAAGAAAACTACAAATCAACACT-----------------CCTAGACTCCTAACATTACTGGGAGATC
  1249. i rheMac2.chr10 C 0 C 0
  1250. s calJac1.Contig12391 2914 230 + 45167 GACAGGGACTGCTCCAGGTGCTCGGGCCCGTGAACGCTGGACCCCAGGGAAGCAGCTGAGGCTTGAAGGAGAGGCTCTGCAGCCAGGGCACGTGCAGGAAATGAAGGAACTCAGAGAGGATGAAGGGTTTAGGGTGGCTTTGTATGTTGAGCACAGAGCTGGTCAAGAAAACTACAAATTAGgactgggcgtggtggctcaagcctgtaatcctagcactt-tgggaggcc
  1251. i calJac1.Contig12391 I 1717 I 1136
  1252. a score=184129.0
  1253. s ponAbe2.chr22 13872283 207 + 46535552 CGCCTCCTTGATATCTCATGAATCGCAGAATTTCCCAGATAAAGTAGCTCATTTAATTATCCTCTTTGCTACTATCACTAAACCAGTACATTTTTCCACGGTTTCCTAGTCTTATCACAGATAGTAGAGATGGAAAACCTAAATTACACTCTAATGGATGAAATGTCAGTTCAAAAATCCCA---TGATTTCCAGCACTTTTCTCTAGCA
  1254. s hg18.chr22 16146137 207 + 49691432 CGCCTCCTTGATATCTCATGAATCGCAGAATTTCCCAGATAAAGTAGCTCATTTAATTATCCTCTTTGCTGCTATCACTAAACCAGTTCATTTTCCCACAGTTTCCTAGTCTTATCACAGATAGTAGAGATGGAAAACCTAAATTACACTCTAATGGATGAAATGTCAGTTCGAAAATCCCA---TGATTTGCAGCACTTTTCTCTAGCA
  1255. i hg18.chr22 C 0 C 0
  1256. s panTro2.chr22 16166527 207 + 50165558 CGCCTCCTTGATATCCCATGAATCGCAGAATTTCCCAGATAAAGTAGCTCATTTAATTATCCTCTTTGCTGCTATCACCAAACCAGTTCATTTTCCCACAGTTTCCTAGTCTTATCACAGATAGCAGAGATGGAAAACCTAAATTACACTCTAATGGATGAAATGTCAGTTCGAAAATCCCA---TGATTTGCAGCACTTTTCTCTAGCG
  1257. i panTro2.chr22 C 0 C 0
  1258. s rheMac2.chr10 61954294 206 + 94855758 CGCCTCCTTGATATCTCATGAATGGCAGAATTTCCCAGATAAATTAGCTCATTTAATTATCCTCTTTGCTACTATCACTAAACCGGTACATTTTCCCACAGTTTCCTAGTCTTATCACAGATAGTAGAGATGGAAAACCTAAATTACACTCTAATGGATAAAATGTCAGTTTGAAAATCCCA----GATTTGCAGCACTTTTCTCTAGCA
  1259. i rheMac2.chr10 C 0 C 0
  1260. s calJac1.Contig11249 304 210 + 53326 TGCCTCTTTGATAGCTCATGAATCACAGAACTTCCCAGATAAATCAACTCATTTAATTATCCTCTTTGCAGCTGTCACTAACCCGGTACATTTTCCCAGAGCTTCCTAGTTTTATCACAGATAGTAGAGGTGGAAAACCTAAATTACACTCGAATGGATGAAGTGTCAGTTCAAAAATCCCACGCTGTTCTGCAGCACTTTTCTCTGGCA
  1261. i calJac1.Contig11249 I 215 C 0
  1262. a score=132307.0
  1263. s ponAbe2.chr22 13872490 253 + 46535552 TTACAGAACTTCCCCTACAAAGCTTCACAGCCATCAGACTTTCATCCCAACTCTGGCTTGACACTTCCCTGCAGTTCCAGTTCTACCATTTCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-----------------------------------tgtgtgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACCG--CCCCCCCACCATGTGTGTTATTATGGTACCAGTCACATAATTGGCTCCCAA
  1264. s calJac1.Contig11249 514 204 + 53326 TTACAGAAGTTCCCCCACAAAGCTTCACAGCCATCAGACTTTGATCCCAGCTCT-GTTTGACACCTCCCTGCAGTTCCCTTTCTACCATTTC--------------------ATGTGTGTGTGCACCCGCTATTGCAAATGCCTTGGCTGTCTCAAGATTTGTATG---------------------------------------------------------------TTTCACCGCCCCCCCCCACCATG--TGGTATCATGGTAGCAGTCACATAATTGGCTCCCAA
  1265. i calJac1.Contig11249 C 0 C 0
  1266. s rheMac2.chr10 61954500 206 + 94855758 TTACAGAACTT-GCCTACAAAGCTTCACAGCCATCAGACTTTCATCCCAACTCTGGCTTGACACTTCCCTGCAGTTCCCTTTCTACCATTTC------------------ATGTGTGTGTGTGTGCACACTATTGCAAATGTCTTGGTTGTC-CCAGATCTGTATG---------------------------------------------------------------TTTCACCG-CCCCCCCCACCATGTATGTTATTATGGTAGCAGTCGCATAATTGGCTCCCAG
  1267. i rheMac2.chr10 C 0 C 0
  1268. s panTro2.chr22 16166734 218 + 50165558 TTACAGAACTTCCCCTACAAAGCTTCACAGCCATCAGACTTTCATCTCGACTCTGGCTTGACACTTCCCTGCAGTTCCTGTTCTACCATTTC--------gtgtgtgtgtgtgtgtgtgtgtgtgCACACTATTGCAAATGCCTTGGTTGTC-CAAGATTTGTATG---------------------------------------------------------------TTTCACCGCCCCCCCCCACCATGTATGCTATTATGGTAGCAGTCACATAATTGGCTCCCAA
  1269. i panTro2.chr22 C 0 C 0
  1270. s hg18.chr22 16146344 224 + 49691432 TTACAGAATTTCCCCTACAAAGCTTCACAGCCATCAGACTTTCATCTTAACTCTGGCTTGACACTTCCCTGCAGTTCCCGTTCTACCATTTCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCACGCTATTGCAAATGCCTTGGTTGTC-CAAGATTTGTATG---------------------------------------------------------------TTTCACCG--CCCCCCCACCATGTATGTTATTATGGTAGCAGTCACATAATTGGCTCCCAA
  1271. i hg18.chr22 C 0 C 0
  1272. a score=308375.0
  1273. s ponAbe2.chr22 13872743 315 + 46535552 TAAACATTTACTTGCAATTTGAGAACAATTTATGGGTGAAGATACCCA---AGTGCTATTCGTTTGTTCTCTGCTTCTGGGTGACCTGCAGGGACATCCCTTGCTCTCAATGTTAATGTTCCCAGTACTTTCTGTTCAGTGTGAAAAGGATCCATGAATTGTCTCCCACACAAACCAGCCATGCAGGGCAAGATTTACTTCTAAGTGTTTCTTGTCGCCTTTGAAGTGTGATTGGAGGAGCCAGGCTTTTGTCTCCCTCCACTGATGCCTAAACTTTAACCACTGGACATTCATTCACCTGTACTGAGTATGTCATTT
  1274. s hg18.chr22 16146568 315 + 49691432 TAAACATTTACTTGCAATTTGAGAAAAATTTATGGGTGAAGATATTCA---AGTGCTATTCGTTTGTTCTCTGCTTCTGGGTGACCTGCAGGGACATCCCTTGCTCTCAATGTTAATGTTCCCAGTACTTTCTGTTCAGTGTGAAAAGGATCCATGAATTGTCTCCCACACAAACCAGCCATGCAGGGCAAGATTTACTTCTAAGTGTTTCTTGTCGCCTTTGAAGTGTGATTGGAGGAGCTAGGCTTTTGTCTCCCTCCGCTGATGCCTAAACTTTAACCACTGGACATTCATTCACCTGTACTGAGTATGTCATTT
  1275. i hg18.chr22 C 0 C 0
  1276. s panTro2.chr22 16166952 315 + 50165558 TAAACATTTACTTGCAATTTGAGAAAAATTTATGGGTGAAGATACCCA---AGTGCTATTCGTTTGTTCTCTGCTTCTGGGTGACCTGCAGGGACATCCCTTGCTCTCAATGTTAATGTTCCCAGTACTTTCTGTTCAGTGTGAAAAGGATCCACGAATTGTCTCCCACACAAACCAGCCATGCAGGGCAAGATTTACTTCTAAGTGTTTCTTGTCGCCTTTGAAGTGTGATTGGAGGAGCTAGGCTTTTGTCTCCCTCCAGTGATGCCTAAACTTTAACCACTGGACATTCATTCACCTGTACTGAGTATGTCATTT
  1277. i panTro2.chr22 C 0 C 0
  1278. s rheMac2.chr10 61954706 314 + 94855758 TAAACATTTACTTGCAGTTTGAGAAAAATTTATGGGTGAAGATACCCA---AGTGCTATTCCTTTGTTCTCTGCTTCTGGGTGACCTGCAGTGAAATCCCTTGGTCTCAATGTTAATGTTCCCAGTACTTTCTGTTCAATGTGAAAAGGATCCATGAATTGTCTCCCACACAAACCAGTCATGCAGGGCAAGATTTATTTCTAAGTGTTTCTCGTCGCCTTTGAAGTG-GATTGGAGGAGCTAGGCTTTTGTCTCCCTCCACTGATGCCTAAACTTTAACCACTGGACATTCATTCACCTGTACTGAGTATGTCATTT
  1279. i rheMac2.chr10 C 0 C 0
  1280. s calJac1.Contig11249 718 306 + 53326 TAAACATTTACTCGCAGTTTGAGAAAAATTTACG-----------CCATTTAGTGCTACTCCTTTGTTCTCTGCTTCTGGGTGACCTGAACTGAAATCCTTTGCTCTTGATGTTAATGTTCCC-TTACCTTCTGTTCAAGGTGAAAAGGATTCATGAATTCTCTCTCACACAAACCAGCCATGCAGGGCAAGATTTACTTCTAAGTGTTTCCTATCACCTTTGAAGTGTGATTGCAGGAGTTAGGCTTTTGTCTCTCTCCACTGATGCCTAAACTTTAACCACTGGACATTCATTCACCTGTACTGAGTATGTCATTT
  1281. i calJac1.Contig11249 C 0 C 0
  1282. a score=142253.0
  1283. s ponAbe2.chr22 13873058 196 + 46535552 TGCCTATGCCCTTTTAAAATGGCCTTTCCATGAGCAGTAAAGAATCCTAAGTGAAGAACCCAGAtcactgtgttgcccaggctggtcttgagctcctgggcacaaacaatcctcctgtctcagccccccaaaatgctgagattacagatatgagccactgtgcccagcCTAGATTTGCtatatatatatatatata
  1284. s hg18.chr22 16146883 196 + 49691432 TGCCTATGCCCTTTTAAAATGGCCTTTCCATGAGCAGTAAAGAATCCTAAGTGAAGAACCCAGATGActatgttgcccaggctggtcttgaactcctgggcacaagcaatcctcctgtctcagcctcccaaaatgctgagattacagatatgagccactgcgcccagcCTAGATTTGCtatatgtatatatatata
  1285. i hg18.chr22 C 0 C 0
  1286. s panTro2.chr22 16167267 196 + 50165558 TGCCTATGACCTTTTAAAATGGCCTTTCCATGAGCAGTAAAGAATCCTAAGTGAAGAACCCAGATGActatgttgcccaggctggtcttgaactcctgggcacaagcaatcctcctgtctcagcctcccaaaatgctgagattacagatatgagccactgcacccagcCTAGATTTGCtatatatatatatatata
  1287. i panTro2.chr22 C 0 C 0
  1288. s rheMac2.chr10 61955020 196 + 94855758 GTCATATGCCCTTTTAAAATGGCCTTTCCATGAGCAGTAAAGAATCCTAAGTAAAGAACACAGATGActatattgcccaggctggtcttgaactcctggtcccaagcaatcctcctgtctcagcctccccaaatgctgagattacaggtatgagccactgtgcccagcCTAGACTTGCCatatatatatatatata
  1289. i rheMac2.chr10 C 0 I 513
  1290. s calJac1.Contig11249 1024 167 + 53326 TCCCTGTGCCCTTTTTACATAGACTTTGCATGAGCAGTAAAGAACCATAAATGAGGAACCTAGTTGActatgttgcccaggctggtcttgaactcctggtctcaagcaatcctcccatctcagcctcccaaaa---tgagattacaggcatgag--------ccCAGCCTAGATTTGC------------------
  1291. i calJac1.Contig11249 C 0 C 0
  1292. a score=126442.0
  1293. s ponAbe2.chr22 13873254 194 + 46535552 ta--------tttttttttttgaaacagagtcttgctcttgttgccaaggctggagtgcagtggtgcgatcccaactcactgcaacctccgcctcccag------gtgattctcctgcctcagcctcccgagtagctgggattacaggtgcctgccaccatgcctggctaatttttgta--tttttttagtagagactgaaaaatacaac
  1294. s hg18.chr22 16147079 197 + 49691432 ta-----ttttttttttttttgaaagggagtcttgctcttgtctccaaggctggagtgcagtggtgcaatcccagctcaccgcaacctctgcctcccag------gtgattctcttgcctcagcctcccgagtagctgggattacaggtgcctgccaccacgcctggctaatttttgta--tttttttagtagagactgaaaaatacaac
  1295. i hg18.chr22 C 0 C 0
  1296. s panTro2.chr22 16167463 200 + 50165558 tatttttttttttttttttttgaaagggagtcttgctcttgtctccaaggctggagtgcagtggtgcgatcccagctcaccgcaacctccgcctcccag------gtgattctcctgcctcagcctcccgagtagctgggattacaggtgcctgccaccatgcctggctaatttttgta--tttttttagtagagactgaaaaataca--
  1297. i panTro2.chr22 C 0 I 2
  1298. s rheMac2.chr10 61955729 186 + 94855758 --------ttttattttttttgaaacagagtctcactcttgttgccaaggctggagtgcaatggtgcaatcccagctcactacaacctccgcctcccgggttcaagtgattcttctgcctcagcctccccagtagctgggattacaggcacctgccaccacgcccggctaatttttgtatttttttttagtaga----------------
  1299. i rheMac2.chr10 I 513 C 0
  1300. s calJac1.Contig11249 1191 178 + 53326 ------------ttttttttttaactagagtctcactcttgtcggctaggctgaagtgcagcggcgccatctcagctcactgcaacctctgcct--caa------gagattcttttgcctcagcctcccaagtagctgggattacaagcgcctacctccgcacctggctagtttttgtg---ttttttagtagagacagga---------
  1301. i calJac1.Contig11249 C 0 C 0
  1302. a score=93552.0
  1303. s ponAbe2.chr22 13873448 124 + 46535552 atcacattgtatttcatcacgttggccaagctggtctcaaactcctgacttgaggtgatccgcctgacttggcctctcaaagtgctgggatacaggcgtgagccaccgtgcccggccTAGATTT
  1304. s hg18.chr22 16147276 124 + 49691432 atcacattgtatttcatcgcattggccaggctggtctcaaactcctgacttgaggtgatccgcctgacttggcctctcaaaatgctgggatacaggcgtgagccaccgtgtccggcctagattt
  1305. i hg18.chr22 C 0 C 0
  1306. s panTro2.chr22 16167665 124 + 50165558 atcacaatgtatttcatcgcattggccaggctggtctcaaactcctgacttgaggtgatccgcccgacttggcctctcaaaatgctgggatacaggcgtgagccaccgtgtccggccTAGATTT
  1307. i panTro2.chr22 I 2 C 0
  1308. s rheMac2.chr10 61955915 120 + 94855758 --cacgcgg--tttcatcacgttggccaggctggtctcaaactcctgacttgaggtgatccgccccacttggcctctcaaagtgctgggatacaggcgtgaaccaccacgcccggccTAGATTT
  1309. i rheMac2.chr10 C 0 C 0
  1310. s calJac1.Contig11249 1369 114 + 53326 ----------gtttcaccatgttggccaggctggtctcaaactcctgacttgtggtgatccaccagccttagcctctcaaagtgctgggacacaggtgtgagccaccacacctggccTGGATTC
  1311. i calJac1.Contig11249 C 0 I 2882
  1312. a score=720471.0
  1313. s ponAbe2.chr22 13873743 982 + 46535552 GCAGAGACTTTGAGGACGGGAATGACGTGGGGAAAGGGCATGATGGATTCACAGGCTCCTTTGCTCACACTGTATCTACTATGTGTTCTGGGTGCCTGAAGAGCAGACCGCAGGTGGTGGGTAGTGCACGCTCATGGAAGGATTTGTCTGGGGTTGGTAAAGACTTGGGCGTACTTCACTGCCAAAAAGGGAGCACCAGTGGAGAGAATCTGAAAATGGTTTTGAATAATGCACAGGCGCCAGGGAGGCAGAGGAGAGGAAGTGATCCCAGTGAAACAAGTATTAACAAAGTCTTTGGGACTAAAACTCTTTGGAACAAATTTATGCCTGGGTAGGGAAGTTCTGGACTCAGGCTGGCTTCATGGCACAGTCTCTGTGGAACAGGTACTTGCAAAGTCTCAGGTATGGCCTTGTTAGCAAGTGGCAAGCTGGACACCTAGGTCCTACAAAGCCCTATCTACTTTTAGCCACATTTTACTTTTGCATCACTAGATCCAAAAGAGGCAAGGATGCCTTGTCCCAGGCTTGGGGGACAAAGCTGGCCTCCCATGGAAGGAA--------AGGAGATTACAGCTGGGGCTCTCAGTGGGAAACCTACTCCTGGAAGAGTCCTGGTAGCTCTGACCCCCGTGGCCATTTGTTCTCACCTCTCTTCTAGCGCCTGTCACACTGCAGTGTCATCCTTTATTTACTTAACAAATAATAATCTGCCTTCCTCACCAGCACTGAGCTTCCTCAGTGCAGAAGTAGAGTTCGTCATCTTAGCTCCC-TCCAGGGCTATGGCCATGCTCAAGAAAGTTGACCAAGATTGGAAATGAATGAGTGCGTGCTGCTTCCCCATCTCCAGACGCCACAGTCTCTCGCCTAGATGAAGGCGCTAACTAATAACTGGGAGCCCACCTGGACTCTTACCTCCCTGGACTCTTACCTCCCTCCCTGCTGTTTGCCGCATTGGGGAGAGACCAGAGCCACCTTTCTAATGCGC
  1314. s hg18.chr22 16147569 954 + 49691432 GCAGAGACTTTGAGGACGGGAATGACCTGGGGAAAGGGCATGATGGATTCACAGGCTCCTGTGCTCACACTGTATCTGCTATGTGTTCTGGGTGCCTGAAGAGCAGATCGCAGGTGGTGGGTAGTGCATGCTCATGGAAGGAGTTGTCTGGGGTTGGTAAAGACTTGGGCGTACTTCACTGCCAAAAAGGGAGCACCGGTGGAGAGAATCTGAACATGGTTTTGAATAATGCACAGGAGCCAGGGAGGCAGAGGAGAGGAAGTGATCCCAGTGAAACAAGTATTAACAAAGTCTTTGGGACTAAAACTCTTTGGAACAAATTTATGCCTGGGTAGGGAAGTTCTGGACTCAGGCTGGCTTCATGGCACAGTCTCTGTGGAGCAGGTACTTGCAAAGTCTCAGGTATGGCCTTCTCAGCAAGTGGCAAGCTGGACACCTAGGTCCTACAAAGCCCTATCTACTTTTAGCCACATTTTACTTTTGC-TCACTAGATCCAAAAGAGGCAAGGATGCCCTGTCCCAGGCTTGGGGGACAAAGCTGGCATCCCATGGAAGGAAAGGAGATGAGGAGATGAGAGCTGTGGCTCTCAGTGGGAAACCTCCTCCTGGAAGAGTCCTGGTAGCTCTGACCCCCATGGCCATTTGTTCTCACCTGTCTTCTAGCACCTGTCACACTGCAGTGTCATCCTTTATTTACTTAACAAATAATAATCTGC-------------------CTTCCTCAGTGCAGAAGTAGAGCTCGTCATCTCAGCTCCC-TCCAGGGCTATGGCCGTGCTCAAGAAAATTGACCAAGATTGGAAATGAATGAGTGCGtgctgcttccccatctccagacgccacagtctgtcacctagctcaaggcgctaactaataactgggagccca----------------cctggactcttacctccctccctgctgtttgccacactggggagagaccagagccacctttctaatgcgc
  1315. i hg18.chr22 C 0 I 1
  1316. s panTro2.chr22 16168308 947 + 50165558 GCAGAGACTCGAAGGACGGANNTGACTGGGNNAAAGGGCATGATGGATTCACAGGCTCCTCTGCTCACACTGTATCTGCTATGTGTTCTGGGTGCCTGAAGAGCAGACGCAGGGTGGTGGGTAGTGCATGCTCACGGAAGGAGTTGTCTGGGGTTGGTAAAGACTTGGGCGTACTTCACTGCCAAAAAGGGAGCACCGGTGGAGAGAATCTGAACATGGTTTTGAATAATGCACAGGAGCCAGGGAGGCAGAGGAGAGGAAGTGATCCCAGTGAAACAAGTATTAACAAAGTCTTTGGGACTAAAACTCTTTGGAACAAATTTATGCCTGGGTAGGGAAGTTCTGGACTCAGGCTGGCTTCATGGCACAGTCTCTGTGGAGCAGGTACTTGCAAAGTCTCAGGTATGGCCTTCTCAGCAAGTGGCAAGCTGGACACCTAGGTCCTACAAAGCCCTATCTACTTTTAGCCACATTTTACTTTTGCATCACTAGATCCAAAAGAGGCAAGGATGCCCTGTCCCAGGCTTGGGGGACAAAGCTGGCCTCCCATGGAAGGAA--------AGGAGATGAGAGCTGTGGCTCTCAGTGGGAAACCTCCTCCTGGAAGAGTCCTGGTAGCTCTGACCCCCATGGCCATTTGTTCTCACCTGTCTTCTAGCACCTGTCACACTGCAGTGTCATCCTTTATTTACTTAACAAATAATAATCTGC-------------------CTTCCTCAGTGCAGAAGTAGAGCTCGTCAACTCAGCTCCC-TCCAGGGCTATGGCCGTGCTCAAGAAAATTGACCAAGATTGGAAATGAATGAGTGCGtgctgcttccccatctccagacgccacagtctgtcgcctagctcaaggcgctaactaataactgggagccca----------------cctggactcttacctccctccctgctgtttgccacactggggagagaccagagccacctttctaatgcgc
  1317. i panTro2.chr22 I 350 I 1
  1318. s rheMac2.chr10 61956204 958 + 94855758 GCAGAGACTTCGAGGACGGGAATGACCTGGGGAAAGGGCATGATGGATTCACGGGCTCCTCTGCTCACACCGCATCTGCTATGTGTTCTGGGTGCCTGAAGAGCAGACGGCAGGTGGTGGGTAGTGCATGCTCGTGGAAGGAGTTGTCTGGGGTTGGTAAAGACTCGGGCGTACTTCACTGCCAAAAGGGGAGCACCAGTGGAGAGAGTCTGAACATGGTTTTGAATAATGCACAGGAGCCAGGGAGGCAGAGGAGAGGGAGTGAGCCCAGTGACACAAGTATTAACAAAGTCTTTGGGACTAAAACTCTTTGGAACAAACGGATGCCTGGGTAGGGAAGTTCTGGACTCAGGCTGGCTTCATGGCACAGTCTCTGTGGAGCAGGCACTTGCAAAGTCTCGGGTATGGCCTTCTCAGCAAGTGGCAAGCTGGACACCTGGGTCCTACAAAGTCCTATCTACTTTTAGCCACATTTTACTTTTGCATCACTAGATCCAAAAGAGGCAAGGATGCCCTGTCCCAGGCTTGGGGGACAAAGCCAGCCTCCCATGGAAGGAC--------AGGAGATGAGTGCTGTGGCTCTCAGTGGGAAACCTCCTTCTGGAAGAGTCCTAGTAGCTCTGACCCCCACAGCCATTTGTTCTCACCTCTCTTCTAGTGCCTGCCACACTGCAGTGTCATCCTTTATTTACTTAACAAATAATAATCTGCCTTCCTCACCAGCCCCGAGCTTCCTTAGTGCATAAGTAGAGTTAGTCATCTCAGCTCCC-TCCTGGGCTACGGCCATGCTCGAGGAAGTTGACCAAGATTGGAAATGAATGAGTGCGCGCTGCTTCCCCATCTCCAGAAGCCACAGTCTCCCGCCTAGATTAAGGTGCTAAGTAAT-ACTGGGAGCCTA----------------CCTGGACTCTTGCCTTCCTCCCTGCTGTTTGCTGTGTTGGGGAGAGACAAGAGCTACACtttt-------
  1319. i rheMac2.chr10 C 0 I 307
  1320. s calJac1.Contig12391 4280 917 + 45167 -----------------------GACCTGGGGAAAGGGCATGATGGATTCGCGGACTCCTTTGCTCTCACAGCATCTACTGTGCATTCTGGGTGCCTGAAGAGCAGACGGCAGGTCGTGGGCAGTGCGCACTCATGGAAGGAGTTGTCTGGGGTTGGTAAAGACTTGGGTGTATTTCATTGCC-AAAGGGGAACAGCAGTGGAGAGAATCCAAATATGGTTTTGAATAAGTCAGAGGAGCCAGGGAGGCAGAGGAGAGGAAGTGATCCCAGTAAAACAA-TATTAACAAAGTGTTT-GGACGAAATCCCTTTGGAACACATTTATGCCTCGGT-GGGAAGCTCTGGACTCAGGCT-GCTTCGTGGCACAGTCTCCGTGAAGCAGCTCCTTGCAAAGTCTCAGGTGTGGCCTTCTCCGCAAGT-------TGGACACCTGGGTCCTACAAAGCCCCGTCTACTTTTAGCTGCATTTTCCTTTTGCCTCACTAGATCCAAAAGAGGCAAGGACACCCTGTCCCAGGCTTGGGAGGCAAAGCCGGCCT-CCGTGGGAGAGA--------AGGAGATGAGAGCTGTGGCTCTCGGTGGGAAACCTCCTCCGGGAAGGGCCCTGGTAGCTTTGACCCCCACGGCCATTTGTTCTCACCTCCCTCCTAGCGCCTGTCACACTGCATTGTCATCCTTTATTTA-TCAAC-AATAATACTCTTCCTTCCTCACCAGCACTGGGCTTCCTCAGGGC---AGTACAGTTCGTCACCTCAGCTTCCGTCCAGGGCT---GCCATGAGCAAGAAAGTTGACCAAGATGGGAAATGAGTGAGTGCGCGCTGCTTCCCCAGCTCCAGACGCCAGCGTCTCCCGCCTAGATGAAGGC----ACTAGTAATTGGGGGCCCA----------------CCT-GATTCTTGCCTCCCTCCCTGCTGCTTGCCACATT-GGGAGAGACCAGAGCCACCTTTCCAACACCC
  1321. i calJac1.Contig12391 I 1136 C 0
  1322. a score=25360.0
  1323. s ponAbe2.chr22 13874725 31 + 46535552 AATCCTTTCACGTCTCTCCCTACCCCAAACC
  1324. s hg18.chr22 16148524 31 + 49691432 aatcctttcacgtctctccctgccccaaacc
  1325. i hg18.chr22 I 1 I 268
  1326. s panTro2.chr22 16169256 31 + 50165558 aatcctttcacgtctctccctgccccaaacc
  1327. i panTro2.chr22 I 1 I 268
  1328. s rheMac2.chr10 61957469 31 + 94855758 AATCCTTTCACATCTCTCCCTGCCCCAAACC
  1329. i rheMac2.chr10 I 307 I 265
  1330. s calJac1.Contig12391 5198 31 + 45167 AGTCCTTTCATGTCTTGCCCAGCCCCAAACC
  1331. i calJac1.Contig12391 C 0 I 384
  1332. a score=971551.0
  1333. s ponAbe2.chr22 13875331 1271 + 46535552 ctctgtccacccaaggtggagtcccagtggtacgatcacagctcactgcagcctcaacctttctgggctcaagccatcctcttgcctgagcct-ctgagtaggggaaactacaggtgtgtgccaccaccacacccaactaattttaaaattatttgtagagagagggcttccctatgttgcttgggctggtcttaaactcctggactcaagtgatccttctgccttgacctcccaaaatgctggg-ataacaggcCCCAGATGCTTTAAACTGACAGGACCAGGACAGGTAAGGTCATTTGTGGTCTGGCCGA-------CTCATGCCTGCTCCCCACCTGCAGCTCCAAACTCTGGTCCTCACAAGTGCCTTTAGCTCACCCAATGTTTCCTGCTGTCTTGATTGCCTTTAGTCCTTCACGCAATGAAGCAATGTCCTTAGTTTCTCTGATCCCCATTTCACCTAGGTCATTCCTTCAGGTCTCAGCTGACTGTCTTCCTCTTGCCATCACTAACCTCCCCAGAGAAGGCTGGATGCCCCTGTGCTG---------------------------------------------------------------------------------------------------------GCCCCTGCCTAGGTCACTGCGATGCCCTCTGAGCCCAGCACAACGCACAGCACTTAGTGCACTGGTGAACACAGGGGTCTAGAAGAGATGAAAAGACCTAACAGCAGCCAGCAGAAAAGCAGAGGAAGGAGGAGAGAGAAAGCCTGAGAGTCAGAGAAGGGTGAAAGAGTGTGATCCTGAGTAGATGGCAGGGCACAGATGGGA----GCTGTGAGCTGTGTGTGACACACGCTGGGTCCCTGTGGCAGATGCAAGTGATCCATCTGTAGGTTATTCTTAGGAAGTGTGAAATCAATGTCAGGAGAGAAGGGAGCTGAAGCTAGCAACTGAAGAGTCACCCCAGGAGAGGACGGAGAGAGAACATGCAGAGGAGAGGGAGCAAGCAAGAGGGGTTACAGGACCAGGACAAGGGCAGCAGTGTTGAGGGCAAGGAGGTCTTGAGCATCCTGATAGGGCCATGGACAAGCCATGGATAG--ACAGAGGGAAATATCAGGGACAGGAGGGAACTTCTGGATTAAGACCCCAGATGGGTGGCTCCAGAGGGGCTGGACAACTGGCACAGGGGGCAAGATTAGCTCTGGGAAGGGGTAAGG--ACACCCCTTCTTCCTCTGAGATAGCAGGAAGAAAGAACAAAGACACGTATCACGGATGTCCCATGGAGGAAAGCTGAGGGAGTTGATACCTGACAGCCTCTACTCTGCGtgaagttgaaggtta--------aagattcagggagtctag
  1334. s rheMac2.chr10 61957765 1341 + 94855758 ctctgt-cagccaagctggagt-ccagtggtactattgcagctcactgcagcctcaacc-tcctgggctcaagcaatcctcttgcctgagcctcctgaatagtggaaactacaggtgtgtgccaccaccacacccaactaattttaaaattatttgtagagagagggcttccctatgttgcccaggctggtctcgaactcctggactcaagtgatccttctgccttaacctcccaaagtgctggg-ataacaggcCCCAGATGCCTTAAACT-----------GACAGGTAAGGTCATTTGTGGTCTGGCCAA-------CTCATGCCTGCTCCCCACCTAGAGCTCCAAACTCTAGTCCTCACAAGTGCCTTTAGTTCACCCAGTGTTTCCT-CTGTCTTGATTGCCTTTGGTCCTTCACGCAATGAGGCAATGTCCTTAGTTTCTCTGATCCCCATTTCACCTCAGTCATtccttcaggtctcagctgactgtcttcctctcgccgtccctaaccccccaagagaaggctggatgcccctctgctgggctttcctggagctctgcacttccctcatgaagcacctatcaacccatctgta----------------------tctgcccc-gggcccgtcagggcagggttgcccctgcctaggtcactgcgacgccctctgagcccagcacaacgcagagcactcggtacactggtgaacacatgggtctagaagggatgaaAGGACCTAACGGCAGCCAGCAGAAAAGCAGAGGAATGAGGAGAGAGAAAGCCTGAGAGTCAGAGAGGCATGAAAGGATGTGATCCTGAGTAGATGACAGGGCGCAGATGGGAGGATGCTGGGAGC--TGTGTGACACGCGCTGGGTCCCTGTGGCAGATGCGAGTGATCCATCTGTAGATGACTCGTAGGAAGTGTGAAATCCATGCCAGGAGAGAAGGGAGCTGAAGCGAGCAACTGAAGAGTCACCCTGGGAGAGGACGGAGAGAGAACATGCAGAGGAGAGGGAGCAAGCAGGAGAGGTTACAGGACCAGGACAAGGGCAGCGGTTTTGAGGGCAAGAAGGTCTTGAGCATCCTGATAGGGCCATGGAAAAGCCATGGATAG--ACAGAGGGAAACATCAGGGACAGGCGGGAACTCCTGGAACAAGGCCCCAGACGGGTGGCCCCAGAGGGGCTGGGCAACCGGCACAGGTGGCAAGATTAGCTCTGGAAAGGGGTAAGG--ACCCCCCTTCTTCCTCTCAGACAGCAGGAAGAAAGAACAAAGACCCATATCACGGATGTCCCACGGAGGAAAGCTGAGGGAGCTGACACCCGACAGCCTCTACTCTGCGTGAAGTTAAAGGTTA--------AAGATTCAGggagtctag
  1335. i rheMac2.chr10 I 265 C 0
  1336. s panTro2.chr22 16169555 1260 + 50165558 ctctgt-cacccaagctggtgt-ccagtggtacgatcacagctcactgcagcctcaacc-tcctgggctcaagccatcctcttgcctgagcctcctgagtaggggaaactacaggtgtgtgccaccaccacacccaactaattttaaaattatttgtagagagagggcttccctatgttgctcaggctggtctcaaactcctggactcaagtgatccttctgccttgacctcccaaagtgctggg-ataagaggcCCCAGATGCTTTAAACT-----------GACAGGTAAGGTCATCTGTGGTCTGGCCAA-------CTCATGCCTGCTCCCCACCTGCAGCTCCAAACTCTGGTCCTCACAAGTGCCTTTAGCTCACCCAGTGTTTCCTGCTGTCTTGATTGCCTTTAGTCCTTCACGCAACGAGGCAATGTCCTTAGTTTCTCTGATCCCGATTTCACCTAGGTCATTCCTTCAGGTCTCAGCTGACTGTCTTCCTCTTGCCGTCGCTAACCTCCCCAGAGAAGGCTGGATGCCCCTGTGCTG---------------------------------------------------------------------------------------------------------GCCCCTGCCTAGGTCATTGCGACGCCCTTTGAGCCCAGCACAACACACAGCACTCAGTGCACTGGTGAACACAGGGGTCTAGAAGAGATGAAAGGACCTAACAGCAGCCAGCAGAAAAGCAGAGGAAGGAGGAGAGAGAAAGCCTGAGAGTCAGAGAGGGGTGAAAGGGTGTGAACCTGAGTAGATGACAGGGCACAGATGGGA----GCTATGAGCTGTGTGTGACACACGCTGGGTCCCTGTGGCAGATGCAAGTGATCCATCTGTAGCTTATTCTTAGGAAGTGTGAAATCAGTGTCAGGAGAGAAGGGAGCTGAAGCTAGCAACTGAAGAGTCACCCCGGGAGAGGACGGAGAGAGAACATGCAGAGGAGAGGGAGCAAGCAGGAGGGGTTACAGGACCAGGACAAGGGCAGCAGTTTTGAGGGCAAGGAGGTCTTGAGCATCCTGATAGGGCCATGGACAAGCCATGGATAG--ACagagggaaacatcagggacaggagggaactcctggagcaaggccccagatgggtggccccagaggggctgggcgactggcacaggtggcaagattagctctggaaagtggtaaggacacaccccttcttcctctgagatagcaggaagaaagaacaaagACACATATCATGGATGTCCCATGGAGGAAAGCTGAGGGAGTTGATACCTGACAGCCTCTACTCTgcgtgaagttgaagttta--------aagattcagggagtctag
  1337. i panTro2.chr22 I 268 C 0
  1338. s hg18.chr22 16148823 1257 + 49691432 ctctgt-cacccaagctggagt-ccagtggtacgatcacagctcactgcagcctcaacc-tcctgggttcaagccatcctcttgcctgagcctcctgagtaggggaaactacaggtgtgtgccaccaccacacccaactaattttaaaattatttgtagagagagggcttccctgtgttgctcaggctggtctcaaactcctggactcaagtgatccttctgccttgacctaccaaagtgctggg-ataagaggcCCCAGATGCTTTAAACT-----------GACAGGTAAGGTCATTTGTGGTCTGGCCAA-------CTCATGCCTGCTCCCCACCTGCAGCTCCAAACTCTGGTCCTCACAAGTGCCTTTAGCTCACCCAATGTTTCCTGCTGTCTTGATTGCCTTTAGTCCTTCACACAACGAGGCAATGTCCTTAGTTTCTCTGATCCCCATTTCACCTAGGTCATTCCTTCAGGTCTCAGCTGACTGTCTTCATCTTGCCGTCGCCAACCTCCCCAGAGAAGGCTGGATGCCCCTGTGCTG---------------------------------------------------------------------------------------------------------GCCCCTGCCTAGGTCATTGCGACGCGCTTTGAGCCCAGCACAACACACAGCACTCAGTGCACTGGTGAACACAGGGGTCCAGAAGAGATGAAAGGACCTAACAGCAGCCAGCAGAAAAGCAGAGGAAGGAGGAGAGAGAAAGCCTGAGAGTCAGAGAGGGGTGAAAGGGTGTGATCCTGAGTAGATGACAGGGCACAGATGGGA----GCTATGAGCTGTGTGTGACACACGCTGGGTCCCTGTGGCAGATGCAAGTGATCCATCTGTAGCTTATTCTTAGGAAGTGTGAAATCAGTGTCAGGAGAGAAGGGAGCTGAAGCTAGCAACTGAAGAGTCAGCCTGGGAGAGGACGGAGAGAGAACATGCAGAGGAGAGGGAGCAAGCAGGAGGGGTTACAGGACCAGGACAAGGGCAGCAGTTTTGAGGGCAAGGAGGTCTTGAGCATCC-GATAGGGCCATGGACAAGCCATGGATAG--ACagagggaaacatcagggacaggagggaactcctggagcaaggccccagatgggtggccccagaggggctgggcgaccggcacaggtggcaagattagctctggaaaggggtaagg--acaccccttcttcctctgagatagcaggaagaaagaacaaagACACATATCATGGATGTCCCATGGAGGAAAGCTGAGGGAGTTGATACCTGACAGCCTCTACTCTgcgtgaagttgaagttta--------aagattcagggagtctag
  1339. i hg18.chr22 I 268 C 0
  1340. s calJac1.Contig12391 5613 1340 + 45167 --ctgtactcccaagctggagt-gcagtggtaccatcacagctcactgcagcctcagcc-tcctgggctcaagcagtcctcttgcctgagcctgccaagtagcagagactacaggtatgtgcccccttcacatccagctaattttaaaattatttgtagagagggggcttccctatgttgctcaggctggtctggaactcctggactcaagtgatccttccaccttgacctcccaaagtgctgggaataacaggcT-------CTTTAAACT-----------GACCGGTGAGGTCGGCTGCAGCCTGGCCAGCTGCTCTCTCCTGCCTGCTCCCTACCTGGAGCTCCAAGCT------CTCACAAGTGCCTTTAGTTCCCCCAGTGTGCCCTGCAGCCTTGATGGCCTTTGGTCCTTCACATGATGCAGCAATGTCCTTAGTTTCTCCGATTCCCACTTCACCTAGGTCAAGCCTTCGGGTCTCAGCTGACCGTCTTCCTCTCGCCATCACTAACCTAACC-GAGAAGGCT-GATGCCCCTCTGCTGGGCTTTCCTGGAGCTCTGCACTTCCCTCATG----------------------AAGCAACTGTCAAGCCACCTGTATCTGCCACGGGGCCCATCAGGGCACAGGTGCACCTGCCTAGGTCACCGAGATGCCTTCCGAG-CAAGCACAACGCGCAGCACTCAGTGCACCGGTCAACACATGGGTCTAGAAGAGACGAAAGGACCTAACAGCAGCCAGCAGAAAAACAGAGGGAGGAGGAGAGAGAAAGCCTGCGAGTCAGAGAGGGGTGAGAGGGTGTGATCCTGAGTCGATGACAGGGCCCAGAGGGGAGGGTTCTGTGAGCTGCGTGTGACACGCGCTGGGTCCCTGTGGCAGGCGCGAGTGATCCACCTGTAGATTACTCGTAGGAAGTGCAAAGTCAGTATCAGGAGAGAAGGGGGCCGAAGCTCGCAACTGGAGAGTCACCCCGCGAGAGCACG----GAGAAGTCGCGGAGGAGCGGGAGCAAGCAGGAGGGGTTA-AGGACCACGACAAGGGCGGCGGTTTTGAGGGCGAGGAGGTCTCGAGCATCCTGACAGGGCCGTGGAAAAGCTGTGGAGAGACACAGAGGGAAACATCAGGTACAGGAGGAAAGCCCTGGACGGAGGCCCCAGATGGGTGGTCCCAGA-GGGCTGGGCAACTGGCACAGGCAGCAAAACCAGCTCTGGAAAGGGGTCAAG--ACACCCCTTCTTCGTCCGAGACAGCAGGAAGAAAGAGCAAAGACACATATCACAGCTGTCCCATGGAGGAAAGCTGAGGGAGTTGACACCCGGCAGCCTCTCCTCTGCATGCAGTTGAAGGTTATCTGGGTTAAGAGTCAGGGAGTCTGG
  1341. i calJac1.Contig12391 I 384 I 67
  1342. a score=80333.0
  1343. s ponAbe2.chr22 13876805 160 + 46535552 TCTTGTTGAAGCAGAGCGAGTTTAGGGGACAATAAAAAAAGGCCCACCGAAGAAAAGGGGAGGGCACAGCAGTTTGCCAGCTTCGCCGTTTGTGTCCTG-----------GCCTTGATATTTCGAGAAGAGTTTATTCCTTGTACATGCTGGGGTTACAGGTTTGCTCTTC
  1344. s hg18.chr22 16150284 159 + 49691432 TCTTGTTGAAGCAGAGTGAGTTTAGGGGACAATAAAAAAAGG-CCACCAAAGAAAAGAGGAGGGCACAGCAGTTTGCCAGCTTTGCCATTTGTGTCCTG-----------GTCTTGATATTTCGAGAAGGGTTTATTCCTTGTACATGCTGGGGTTACAGGTTTGCTCTTC
  1345. i hg18.chr22 C 0 C 0
  1346. s panTro2.chr22 16171019 159 + 50165558 TCTTGTTGAAGCAGAGTGAGTTTAGGGGACAATAAAAAAAGG-CCACCGAAGAAAAGGGGAGGGCACAGCAGTTTGCCAACTTTGCCATTTGTGTCCTG-----------GTCTTGATATTTCGAGAAGGGTTTATTCCTTGTACATGCTGGGGTTACAGGTTTACTCTTC
  1347. i panTro2.chr22 C 0 C 0
  1348. s rheMac2.chr10 61959309 159 + 94855758 TCTTGTTGAAGTGGAGCAAGTTTAGGGGACAATAAAAAAGGG-CCACCGAAGAAAAGGGGAGGGCATAGCACTTTGCCAGCTTCGCCATTTGTGTCCTG-----------GCCTTGATATTTCGAGAAGGGTTTATTCCTTGCACATGCTGGGGTTACAGGTTTACTCTTC
  1349. i rheMac2.chr10 C 0 C 0
  1350. s calJac1.Contig12391 7020 122 + 45167 tcttgtt-------acccaggctggagtgcaat-------gg-c---------------aggatctcggctcatcgcaacctccgcctcctgagttcagacaattctcctgcctcagcctcctgagta-------------------gctgggattacaggcacgcgccac
  1351. i calJac1.Contig12391 I 67 I 141
  1352. a score=126308.0
  1353. s ponAbe2.chr22 13876965 185 + 46535552 GTACATAAACATGTGGCATGTGTATATTGTATGCCTGTGCTACATGCAGCATAAACATTGCTTTGAATAAATGTAATCatttattaatttgcccacaaaaatttattgagcacctgctctgtgcaaggcactgacgagtgttcaggggagacaaaatggataaaaaacaga--------------------------------------ccttcactctgaag--------------------------------------------------------------------------------------------------------------------------------
  1354. s hg18.chr22 16150443 185 + 49691432 GTACATAAACATGTGGCATGTGTATATTGCATGCCTATGCTACATGCAGCATAAACGTTGCTTTGAATAAATGTGGTCatttattaatttgcccacaaaaatttattgagcacctgctctgtgcaaggcactgacaagtgttcaggggagacaaaatggataaaaaacaga--------------------------------------cctgcactctgaag--------------------------------------------------------------------------------------------------------------------------------
  1355. i hg18.chr22 C 0 C 0
  1356. s panTro2.chr22 16171178 185 + 50165558 GTACATAAACATGTGGCATGTGTATATTGCATGCCTATGCTACATGCAGCATAAACGTTGCTTTGAATAAATGTGGTCatttattaatttgcccacaaaaatttattgagcacctgctctgtgcaaggcactgacaagtgttcaggggagacaaaatggataaaaaacaga--------------------------------------cctgcactctgaag--------------------------------------------------------------------------------------------------------------------------------
  1357. i panTro2.chr22 C 0 C 0
  1358. s rheMac2.chr10 61959468 185 + 94855758 GTACATAAACATGTGGCATGTGTATATTGCATGCCTATGCTACATGCAGCATAAACATTGCTTTGAATAAATGTAATCATGTattaatttgctcacaaaaatttattgagcgcctgctctgtgcaaggcactgatgagtgtttaggggagacaaaatggataaaaACCTGA--------------------------------------CCCGTACTCTGAAA--------------------------------------------------------------------------------------------------------------------------------
  1359. i rheMac2.chr10 C 0 C 0
  1360. s calJac1.Contig11249 4365 351 + 53326 GTACATAAACACGTGGCATGTGTATGTTGCGTGTCTGTGCTGCATGCGGCATAAACATTGCTGTAAATAAATGTGATCatttattaatttgccaacaaaagtttattgagcatctggtctgtgcaaggcatggacgagtgctcaggggagacaaaaaggatgaaaaacccataaaaccaggccgggcacggtggctcacgcctattttcccagcactttgggaggccgaggcgggtggatcaagagattgagagaccatcctagtcaacaaggtgaaaccccgtctctactaaaaatacaaaaattagctgggcatggtgatgcgcgcctgtagtcccaactactcaggag
  1361. i calJac1.Contig11249 I 2882 I 133
  1362. a score=36559.0
  1363. s ponAbe2.chr22 13877150 48 + 46535552 caacACTAGGGTATTAGAGTGCAGCTCTTCAGGAGACATAGAATGTGA
  1364. s hg18.chr22 16150628 48 + 49691432 cAACACTAGGGTATTAGAGTGCAGCTCTTCAGGAGACGTAGAATGTGA
  1365. i hg18.chr22 C 0 C 0
  1366. s panTro2.chr22 16171363 48 + 50165558 cAACACTAGGGTATTAGAGTGCAGCTCTTCAGGAGACGTAGAATGTGA
  1367. i panTro2.chr22 C 0 C 0
  1368. s rheMac2.chr10 61959653 48 + 94855758 CAACACCAGGGTATTAGAGCGCAGCTCTTTGGGAGACACGGAATGTGA
  1369. i rheMac2.chr10 C 0 C 0
  1370. s calJac1.Contig11249 4849 46 + 53326 caaaaccagggtcTTAGAGCGCAGCTCTTCAGGAGGC--AGAACGTGA
  1371. i calJac1.Contig11249 I 133 I 1772
  1372. a score=146887.0
  1373. s ponAbe2.chr22 13877198 199 + 46535552 ACCACACAAGTAATTTTT---TAAAAATCAGGttgtttgttagatacggagtctggctctgtcgtccaggctggagtgcagtagctcgatcatagctcacagcagcctcagactcctggactctgtgatcctccccacacagacttcctagtagctgggatgcca----------ggtctgcaccaccacactcagctaatttaaa-----attttg--
  1374. s hg18.chr22 16150676 199 + 49691432 ACCACACAAGTAATTTTT---AAAAAATCAAGttgtttgttagagacggagtctcgctctgtcgtccaggctggagtgcagtagcgcaatcatagctcacagcagcctcagactcctggactctgtgatcctccccactcagacttcctagtagctgggatgcca----------ggtctgcaccaccacactcagctaatttaaa-----attttg--
  1375. i hg18.chr22 C 0 C 0
  1376. s panTro2.chr22 16171411 199 + 50165558 ACCACACAAGTAATTTTT---TAAAAATCAAGttgtttgttagagacggagtctcgctctgtcgtccaggctggagtgcagtagcgcaatcatagctcacagcagcctcagactcctggactctgtgatcctccccactcagacttcctagtagctgggatgcca----------ggtctgcaccaccacactcagctaatttaaa-----attttg--
  1377. i panTro2.chr22 C 0 C 0
  1378. s rheMac2.chr10 61959701 202 + 94855758 ACCATATAAGTAATTTTT---AAAAAATTAAGttgtttgttagagacagagtctcgcgctgtcgtccaggctggagtgcagtagcgcgatcatagctcactgtagcctc--actcctggagtctgtgatcctccccactcagacttcctagtagctgggatgcca----------ggtctgcaccaccacactcagctaattttaattttttttttt--
  1379. i rheMac2.chr10 C 0 C 0
  1380. s calJac1.Contig12391 7283 211 + 45167 gccCCATAGTTTTCTTTTTTAAAAAAATTAGGTTGtttgttagagacggagtctcactctgtcgcccaggctggaatgcagtagtgcgatcatagctcactgcagcctcggactcctggactc--tgatcctccccactcagacttccgagtggcc-ggACGCCAGCTCATTGTGGGTCTGCACCACCACACTCAGCTAATTAAAA-----AATTTTTG
  1381. i calJac1.Contig12391 I 141 I 139
  1382. a score=116485.0
  1383. s ponAbe2.chr22 13877397 156 + 46535552 ttttgtagaggcagagtcttgctatgttgcctcatctggtctcgaactcctgggctcaagtgatcctcctgcctctgtctccaaaagtgctgacattacagctatgagccaccacgctcagctGACTTTtaaaaattattaagatattttatgtgt
  1384. s hg18.chr22 16150875 156 + 49691432 ttttgtagaggcagagtcttgctatgttgcctcgtctggtctcgaacttctgggctcaagtgatcctcctgcctctgtctccaaaagtgctgacattacagctatgagccaccacgctcagctGATTTTtaaaaattattaagatatgttatgtgt
  1385. i hg18.chr22 C 0 C 0
  1386. s panTro2.chr22 16171610 156 + 50165558 ttttgtagaggcagagtcttgctatgttgcctcgtctggtctcgaacttctgggctcaagtgatcctcctgcctctgtctccaaaagtgctgacattacagctatgagccaccacgctcagctGATTTTtaaaaattattaagatatgttatgtgt
  1387. i panTro2.chr22 C 0 C 0
  1388. s rheMac2.chr10 61959903 156 + 94855758 ttttgtagaggcagagtcttgctatgttgccccatctgatctcgaactcctgggctcaagtgatcctcctgcctctgtctccaaaagtgctgatattacagctatgagccaccacacccagctGATTTTtaaaaattattaagatattttatgtgt
  1389. i rheMac2.chr10 C 0 C 0
  1390. s calJac1.Contig12391 7633 151 + 45167 ttttgtagagacagaatcttgctatgttgcccagtctggtctcgaattcacagcctcaagggatcctgccatacctctctccagaagttctgagattagagctaggagccaccatacccagctGACtttt-----ttttttaattgcattttatgt
  1391. i calJac1.Contig12391 I 139 I 2483
  1392. a score=507241.0
  1393. s ponAbe2.chr22 13877657 651 + 46535552 ttggacaacacaATTTTAAAGTGTGCCTCTAAGCTTCAAGGTTAATGTCAAAGGGACTTGTGAGCAACCTCCA--CCCCACTGCCTCCCTTGGCTCCAATCAGAGGCTAGTTGAAGCACAGCTGTGCCCAGGAGGCCAGCGTTTGTTCTGAGCTGCTCATGACCCACGAAGGCTGGCCATTCCCAATTCCCCTGATCCTGTGCCCAGCCAGAGTCTGCTGCAACCTCTAGCTGTGCAGCCTCAA----CAAACGCCCAATCAAACTTCCTCCCCAGGGGAAAGAAGCAAAAAGAGCCATTGCCTTTCTTCTTGGGTCCTGCAAGGTCA-CGCAAAGTGGTAAGGCTGTTTGTTTCTTGCCTTGGAAGTTCAGTTACAAACGACTTGCAGCTGTGAGTTGTTTTCAGACTTTCTCTGGTGCAGTTGCCCC-CGACACCCTCCACCCTCACTGTTGCTGTGTTTACTCACAGTAGTGGGCATTTGAGCC---TTTTTTTTTTCTTTGCCcagcatcctttcttttgggaaacagccccatcccatagaccacatttcatgtaattctggcgggggtgtcagtcttagggaccagccccactcctaccgtgaaggtgggcacttgacccatcccacaccaatcagagGGGCTTTCCCTGGAATTT
  1394. s hg18.chr22 16151135 651 + 49691432 ttggacaacacaATTTTAAAGTGTGCCTCTAAGCGTCAAGGTTAATGTCAAAGGGACTTCTGGGCAACCTCCA--CCCCACTGCCTCCCTTGGCTCCAGTCAGAGGCTGGTTGAAGCAGGGCTATGCCCAGGAGGCCAGCGTTTGTTCTGAGCTGCTCGTGACCCAGGAAGGCTGGCCATTCCCCATTCCCCTGATCCTGTGCCCAGCCAGAGGCTGCTGCAACCTCTAGCTGTGCAGCCTCAA----CAAACGCCCAATCAAACTTCCTCCCCAGGGGAAAGAAGCAAAAAGAGCCATTGCCTTTCTTCTTGGGTCCTGCAAGCTCA-CACAAAGTGGTAAGGCTGTTTGTTTCTTACCTTGGAAGTTCAGTTACAAATGACTTGCAGCTGTGAGTTGTTTTCAGGCTTTCTCTGGTGCCGTTGCCCC-CGACACCCTCCACCCTCACTGTTGCTGTGTTTACTCACAgtagtgggcatctgagcc---ttttttttttctttgtccggcatcctttcttttgggaaatagccccatcccatagaccacatttcatgtaattctggcgggggtgtcagtcttaggggccagccccactcctaccatgaaggcggacacttgacccatcccacaccaatcagaAGGGCTTTCCCTGGAATTT
  1395. i hg18.chr22 C 0 C 0
  1396. s panTro2.chr22 16171870 645 + 50165558 ttggacaacacaATTTTAAAGTGTGCCTCTAAGCGTCAAAGTTAATGTCAAAGGGACTTCTGGGCAACCTCCA--CCCCACTGCCTCCCTTGGCTCCAGTCAGAGGCTGGTTGAAGCAGGGCTATGCCCAGGAGGCCAGCGTTTGTTCCGAGCTGCTCATGACCCAGGAAGGCTGGCCATTCCCCATTCCCCTGATCCTGTGCCCAGCCAGAGGCTGCTGCAACCTCTAGCTGTGCAGCCTCAA----CAAACGCC----CAAAATTCCTCCCC-GGGGAAAGAAGCAAAAAGAGCCATTGCCTTTCTTCTTGGGTCCTGCAAGCTCA-CACAAAGTGGTAAGGCTGTTTGTTTCTTACCTTGGAAGTTCAGTTACGAATGACTTGCAGCTGTGAGTTGTTTTCAGGCTTTCTCTGGTGCCGTTGCCCC-CGACACCCTCCACCCTCACTGTTGCTGTGTTTACTCACAgtagtgggcatctgagcc----tttttttttctttgtccagcatcctttcttttgggaaatagccccatcccatagaccacatttcatgtaattctggtgggggtgtcagtcttaggggccagccccactcctaccttgaaggtggacacttgacccatcccacaccaatcagaAGGGCTTTCCCTGGAATTT
  1397. i panTro2.chr22 C 0 C 0
  1398. s rheMac2.chr10 61960163 651 + 94855758 tttgacaacgcaATTTTAAAGTGTACCTCTAAGCTTCAAGGTTAATGTCAAAGGGACAT-TGGGCAACCTCCA--CCCCACTGCCTCCCTTGGCACCAATCAGAGGCTGGTTGAAGCAGGGCTGTGCCCAGGAGGCCAGCATTTGTTCCGAGCCTCTCACGACCCAGGAAGACTGGCCGTTCTCCCTTCCCCTGATCCTGTGCCCAGCCAGAGGCTGCTGCAACCTCTAGCTGTGCAGTCTCAA----CAAACGCCCAATCAGACTTCCTCCCCAGGGGAAAGAAGCAAAAAGAGCCATTGCCTTTCTTCTTGAGTCCTGCAAGGTCACCACAAAGTGGTGAGGCTGTTTGTTTCCTGCCTTGGAAGTTCAGTTACAAACGGCTTGCAGCTGTGAGTTCTTTTCAGGCTTTCTCTGGTGCCGTTGTCTC-CGACACCCTCCACCCTCATTGTTGCTGTGTTTACTCACAGGAGTGGGCATCTGGGAC--TTTTTTTTTCTCTTGGCCCAGTGTCCTTTCTTTTGGGAAACAGCCTCATCCCATAGCTCCCATTTCATCTCATTTTGGTGGGGGTGTCAGTCTTAGGGGCCAGCCCCACTCCCACCATGAAGGTGGGCAC-TGACCCATCCCACGCCACTCAGAGGGGCTTTCCCTGGACTTT
  1399. i rheMac2.chr10 C 0 C 0
  1400. s calJac1.Contig11249 6667 660 + 53326 CTGGACAACACAATTTTAAAGTGTGCCTCTAAGCTTCAAGGTTAATGTCAAAGGGGCTTCTAGGCACTCTCCACTCCCTGCTGCCTCCCTTGGTACCAGGTAGAGGCTGGATAAAGCAGGGCTGTGCCCAGGAGGCCAGTGTTTGTTCCCAGCTGCTCATGACTCAGGAAGCCTGGCCATTCCTTATTCCCATGATCTGGTGCCGGGCCAGAGGCTGCGGAAACCTCTAGCTGAGCAGTCTCAACAGGCAATCGCCCAACCAAACTTCCTCCCCAGAGGAAAGGAGCAAAAAGAGCCACTGCCCTTCTCCTTGGGTCCTGCAAGTTCACCACAAAGTGGTGAGGCTGTTTTTTTCTTG-CTTGAAAATTCAGTTACAAACGACTTGCAGCTGTGCGTTGTTTTCAGGCTTCCTCTGGTGCCCCTGCCCCTCCACGGCCTCCACTCTCATTACCACTGTGTTGACTCACAGGAGTGGGCATCTGGGCCTTTTTTTTTTTCCCTCTGCCCAACAACCTTTCTTTTGGGAAACAGCCCCATCCTATAG-CCCTATTTTACCTCACTCTGGTGGGGGTGTCAGTCTTAGGGGCCAGCCCCACTCCTACCATGAAGGTGGGCACTTGACCCATCCCACACCAATCACAGGGGCTTTCCCTGGAATTT
  1401. i calJac1.Contig11249 I 1772 n 2483
  1402. a score=434448.0
  1403. s ponAbe2.chr22 13878308 568 + 46535552 AAATATGGAACAGGAGGTCACgcgtggtggctcacacctgtagtcctagcactttgggagaccaagacgggaggagcgtttgagcccaggagttcgagaccagctctgggcaacatagcgagaccctgtctctacaaaaatacaaaaattagttgggtgtggtggcactcgcctgcagtctcagctgtttgggaggctgaagtgggaggattgcctgagctcaggaggtcaaggctgcagtgagccaaagacacaccactatactccagcctgtgtgacaaggggagaccctgtctctaaaaaaaaaaaaaaaaaCCCtaaaaattaaaataaacaaataaataaaGATTGAGCAGAAACAGAGGGGCTGAAGACAATCTGGAGCCAGAGCCCAAGATCCATCTAAGTTGAGA---CCTGTCCTTTTAAAGCCTGGTCGCTGAACTCTGCCTTTGATTCTACGAGCCCTCCTTCCTGTGCT-------------------CCCTCCTTTGCCATCCTctttcccagtcaagttagccagaatccattcctgttgcttataatcaaagaatcctgaTAACAA------ttttttttt
  1404. s hg18.chr22 16151786 569 + 49691432 AAATATGGAGCAGGAggtcaggagtgatggctcacacctgtagtcctagcactttgggagaccaaggcgggaggagcacttgagcccaggagttcgagaccagctctgggcaacatagtgagaccccgtctctacaaaaatacaaaaattagctggatgtggtggcactcgcctgcagtcccagctgtttgggaggccgaagtgggaggattgcctgagctcaggaggtcaaggctgcagtgagccaaagtcacaccactgtactccagcctgtgtgacaaggggagaccctgtctct---caaaaaaaaaaaaaccttaaaaatgaaaataaaCAAATAAATAAAGATTGAGCAGAAACAGAGGGGCTGAAGACAATGTGGGGCCAGAGCCCAAGATCCATCTAAGTTGAGG---CCTGTCCTTTTAAAGCCTGGTCGCTGAACTCTGCCTTTGATTCTACGAGCCCTCCTTCCTGTGCT-------------------CCCTCCTTTGCCCTCCTCCTTCCCAGTCAAGTTAGCCAGAATCCATTCCGGTTGCTTATAATAGAAGAATCCTGATAACAAA--tttttttttttt
  1405. i hg18.chr22 C 0 C 0
  1406. s panTro2.chr22 16172515 563 + 50165558 AAATATGGAGCAGGAggtcaggagtgatggctcacacctgtagtcctagcactttgggagaccaaggcaggaggagtgcttgagcccaggagttcgagaccagctctgggcaacatagtgagaccccgtctctacaaaaatacaaaaattagctgggtgtggtggcactcgcctgcagtcccagctgtttgggaggccgaagtgggaggattgcctgagctcaggaggtcaaggctgcagtgagccaaagtcacaccactgtactccagcctgtgtgacaaggggagaccctgtctct------aaaaaaaaaaaccttaaaaatgaaaataaac----aaATAAAGATTGAGCAGAAACAGAGGGGCTGAAGACAATGTGGGGCCAGAGCCCAAGATCCATCTAAGTTGAGA---ACTGTCCTTTTAAAGCCTGGTCGCTGAACTCTGCCTTTGATTCTACGAGCCCTCCTTCCTGTGCT-------------------CCCTCCTTTGCCCTCCTCCTTCCCAGTCAAGTTAGCCAGAATCCATTCCCGTTGCTTATAATAGAAGAATCCTGATAACAAA-ttttttttttttt
  1407. i panTro2.chr22 C 0 C 0
  1408. s rheMac2.chr10 61960814 569 + 94855758 AAATGTGGAGCAGGAggtcaggcatggtggctcacacctgcagtcccagcactttgggaggccaaggcgggaagaacgcttgagcccaggagttcgagaccaggtctgggcaacagagcgagatcccgtctctacaaaaatacaaaaattagctgggtgtggtggcacttgcctgcaatcccagctgtttgggaggctgaagtgggaggactgcccgagctcacaaggtcaaggctgcagtgagtcaaagtcacaccactgtactccagcctgggtgacaaggggagaccctgtctct--------aaaaaaaaaccctaaaaattaaaataaacaaaTAAATAAATATTGAGCAGAAACAGAGGGGCTGAAGACAATTTGGAGCCAGAGCCCAAGATCCACCTAAGTTGAGACCTCCTGTCCTTTTAAAGCCTGGTCGCTGAGCTCTGCCTCTGATTCTACGAGCCCTCCTTCCTGTGCT-------------------CCCTCCTTTGCCCTCCTCTTCCCCAGTCAAGTTAGCCAGAATCCATTCCTGTTGCTTATAATCAAAGAAAACTGATAACAAtttttttttcttttt
  1409. i rheMac2.chr10 C 0 C 0
  1410. s calJac1.Contig12391 10267 563 + 45167 AAAAATGGAGCTGGAggtcaggcgtggtggctcatgcctgtagtcccaacactttgggagaccaaggtgggaggagcacttgagctcaggagttcaagaccagctctgggcaacacagcaagacccca--tctacaaaaatac-aaaattaactgggagtggtggcacgtgcctgcagtcccagctgtttgggaggctgaagtgggaggattccctgagctt------tcaaggctgcagtgagccaaggt-acaccactgcactctagcctgggagacaaagggagaccctgtctct---------aaaaagaaccctaaaaattaaaataaat----aaataaaTATTGAGCAAAAACAGAGGAGCTGAAGACAATTTGGAGCCAGAATCCAAGATCTACCTAATCTGAGA---CCCATCCTTTTCAAGCCTGGTCATTGAACTCTGCCTTTGATGCTGTGCGGCCTCCTTCCTGGGCTCCCCGCTCCTTCCTGTGTGCCCTCCTTTGCC-TCCTCTTTCCCAGTCAAGGTAGCCAGAATCCATTCCTGTTGCTTATAATCAAAGAATCCTGATAACAA------TTTTTTTTT
  1411. i calJac1.Contig12391 I 2483 I 4197
  1412. a score=920485.0
  1413. s ponAbe2.chr22 13893252 1246 + 46535552 AATCGG----CACTCCAGTGCAGCAAGCTGGTTCCACAGGTGCTAagggacttacagc-gcaggaagccattgctacttctagggtgaggaagacacagtaggagatgacgttgcggggctcctgaagacagggttctgtgttaggggatggaggtgatgagggaagctgggaccaggaagggagatgatgtccaactagagatggaactgtgcaggagacactgcctttgcaggacatggggcccttgcaggaggaggaacgccc--ccttcctcctggctcccacactccagtgttctgcagtgcccccaacagccagagagcaagggagatggggaaatgtggttcccaaccaaacaggccagagcagagcgtggggg-aGTGAGGACAAGTGGGCCCGCAGGCTGCAGGTGGGTACACTGTGGTGAGAACGGTACCACAGGAAGCATCCGCG-TAAGGGACTTTCCTAG-TGCTGACGCCTACGTTAGGGGTGAGGGGTATCTCATCATGAGTGGATGAGGTTTCTTCTTCAGCCTCTTTCCCTTCGACATGGAGAAACTAC--------GATCTCTCTGTGTGCTTGGCTCTGACTTCATGATCATGGGAGAGCCTGGCTGCTCTGGCTGTGGCCATTTCCAGCTCCCATCCCCCCTCGTCACGGCAGGACAGGAGGGTTCTTCATTACCCGGGAACGGCCGTGACGGTCACCTGCCCTAATCGTCCTCTCATCCCCAGGCCGCTGCTGACTCCT-GGAGGCTCCCGGGCTTCTCTGGCAC----TCTGTGCCTTTGTGGCTGTTCCCCAGCGGATCCCCCAGCCGCTCCTGCCTGTCTACATCCTACTTATGCTTCCAAGCCTGGTAGTGGACGTGGCCCTTCCTTCCTCCAGGCTGCTTCCGCGTGCTGTTTTACCCTGTGCTTGGC----GCTGACATTCATCCTCCTGCTATTGGACTGTGT-CACTGACAAGGCTGTTTAATCCACTGACCCGAAAGCCCCGGAGGCAAGGACTGTGCCTGTTTTTATCCCTGTAGCCTCCACCAGGCCAAGGAGTGCCCTGCACTAACACACAACCAGAGTCTATCAAAACGA----AATTGGGGGC--ATTTTGTATGATTTTTCAGAGAATGGGTCATTTTCACAAATTTTTGTGCCAAGACAGAAAGACCCAAGTGTAGAATGTACCACTGTTGTAGGTAGTAGCTGCAGTTGTCACAGTATCTTGAACCTAAATACATTGTCtttct----------------tttttttttttttttttt
  1414. s hg18.chr22 16164490 1250 + 49691432 AATCGG----CACTCCAGTGCAGCAAGCTGGTTCCACAGGTGCTGagggacttacagc-gcaggaagccgttgctactcctagggttaggaagacacagtaggagatgacgttgccgggctcctgaagacagggttccgtgttagtgggtggaggtgatgagggaagctgggaccaggaagggagatgatgtccaactagagatggaactgtgcaggagacactgcctttgcacgacatggggcccttgcaggaggaggaacaccctgccttcctcctggctcccacactccagtcttctgcagtgcccccaacagccagaaagcatgggagatggggaaatgtggttcccgaccaaacaggctggagcagagcatggggt-agtgaggacaagtgggcCCGCAGGCTGCAGGTGGGTACATTGTGGTGAGAATGGAACCACAGGAAGCATCGGCG-TAAGGGACTTTCCTAG-TGCTGACGCCTACGTTAGGGGTGAAGGGTATTTCATCATGAGTAGATGAGGTTTCTTCTTCAGCCTCTTTCCCTTCGACATGGAGAAACTGT--------GATCTCTCTGTGTGCTTGGCTCTGACTTCATGATCATGGGAGAGCCTGGCTGCTCTGGCTGTGGCCATTTCCAGCTCCCATCCCCCCTTGTCCCAGCAGGACAGGAGGGTTCTTCGTTACCCAGGAACGGCCGTGATGGTCACCTGTCCTAATCGTCCTCTCGTCCCCAGGCCGCTGCTGACTCCT-GGAGGCTCCCGGGCTTCTCTGGCAC----TCTGTGCCTTTGTGGCTGTTCCCCAGCGGATCCCCCAGCCACTCCTGCCTGCCTACATCCTACTTATGCTTCCAAGCCTGGTAGTGGACATGGCCCTTCCTTCCTCCAGGCTGCTTCGGTGTGCTGTTTTACCCTGTGCTTGGCACTGACTGACATTCATCCTCTTGCTATTGGACTGCGT-CACTGACAAGGCTGTTTAATCCACTGACCTGAAAGCCCTGGAGGCAAGGGCTGTGCCTGTCTTTATCCCAGTAGCCTCCACCAGGCCAAGGAGTGCCCTGCACTAGCACACAACCCGAGTCTATCAAAACGA----AACTGGGGGC--ATTTTGTATGATTTTTCAGAGAGTGGGTCATTTTCGCAAATCTTTGTGCCAAGCCAGAAAGACCCAAGTGTAGAATGTACCACGGTTGTAGGTAGTAGCTGCAGCTGTCACAGTATCTTGAACCTAAATACCTTGCCtttct----------------tttttttttttttttt--
  1415. i hg18.chr22 C 0 C 0
  1416. s panTro2.chr22 16185968 1248 + 50165558 AATCGG----CACTCCAGTGCAGCAAGCTGGTTCCACAGGTGCTGagggacttacagc-gcaggaagccattgctactcctagggttaggaagacacagtaggagatgacgttgtcgggctcctgaagacagggttccgtgttagtgggtggaggtgatgagggaagctgggaccaggaagggagatgatgtccaactagagatggaactgtgcaggagacactgcctttgcacgacatggggcccttgcaggaggaggaacaccctgccttcctcctggctcccacactccagtcttctgcagtgcccccaagagccagaaagcatgggagatggggaaatgtggttcccgaccaaacaggctggagcagagcatggggg-agtgaggacaagtgggcCCGCAGGCTGCAGGTGGGTACATTGTGGTGAGAATGGAACCACAGGAAGCATCGGCG-TAAGGGACTTTCCTAG-TGCTGACGCCTACGTTAGGGGTGAAGGGTATTTCATCATGAGTAGATGAGGTTTCTTCTTCAGCCTCTTTCCCTTCGACATGGAGAAACTGT--------GATCTCTCTGTGTGCTTGGCTCTGACTTCATGATCATGGGAGAGCCTGGCTGCTCTGGCTGTGGCCATTTCCAGCTCCCATCCCCCCTTGTCCCAGCAGGACAGGAGGGTTCTTCGTTACCCGGGAACGGCCGTGATGGTCACCTGTCCTAATCGTCCTCTCGTCCCCAGGCCGCTGCTGACTCCT-GGAGGCTCccgggcttctctggcac----tctgtgcctttgtggctgttccccagcggatcccccagccgctcctgcctgcctacatcctacttatgcttccaagcctggtagtggacatggcccttccttcctccaggctgcttcggtgtgctgttttaccctgtgcttggcactgactgacattcatcctcttgctattggactatgt-cactgacaaggctgtttaatccactgacctgaaagccctggaggcaagggctgtgcctgtctttatcccagtagcctccaccaggccaaggagtgccctgcactagcaCACAGCCCGAGTCTATCAAAACGA----AACTGGGGGC--ATTTTGTATGACTTTTCAGAGAGTGGGTCATTTTCGCAAATTTTTGTGCCAAGCCAGAAAGACCCAAGTGTAGAATGTACCACGGTTGTAGGTAGTAGCTGCAGCTGTCACAGTATCTTGAACCTAAATACAttgtctttc------------------ttttttttttttttt--
  1417. i panTro2.chr22 C 0 C 0
  1418. s rheMac2.chr10 61974441 1271 + 94855758 AATCGGCACTCACTCCAGTGCAGCAAGCTGGTTCCACAGGTGCTGAGGGACTTTCAGTGGCAGGAAGCCATTGCTACTCCTAGGGTTAGGAAGCCTCAGTAGCAGATGACGTTGCCGGGCTCCTGAAGACAGGATTCTGTGTTGG-GGGTGGAGGTGATGAGGGAAGCTGGGACCAGGAAGGGAGATGATGTCCAACTAGAGATGGAACTGCGTAGGAGACACTGCCTTTGCAGGACACGGGGCCTTTGTAGGAGGAGGAGCACCCTGCCTTCCTCCGGACTCCCACACTGCAGTCTTCTGCAGCGCCCCCAGCAGCCAGAGAGCAAGGGAAATGGGGAAATGTGGTTCCCGACCAAACAGACTGAAGCAGACTGTGGGGG-ACTGAGGACAAGTGGGTCCACAGGCTGCAGGTGGGTATATTGTGGTGAGAATGGAACCACAGGAAGCATCGGCGTTAAGGGACTTTCCTAGTTGCTGATGCCTATGTTAGGGTTGAGGGGTATTTCATCATCAGTGGATGAGGTTCCTTCTTCAGCCTCTTTCCCTTCGACATGGAGAAACTG-----------TCTCTCTGTGTGCTTGGCTCTGACTTCATGATCATGGGAGAGCCTGGCTGCTCTGGCTATGGCCATTTCCAGCTCCCAT-CCCCCTTGTCACAGCAGGACAAGAGGGTTCCTCGTTACCTGGGAACAGCCGTGAGGGTCACCTGTGCTAATCGTCCTCTCGTCCCCAGGCAGCTGCTGACTCCT-GGAGGCTCCCGGGCTTCTCTGGCACTCTGTCTGTGCCTTTGTGGCTGTGCCCCAGCGGATCCCCCAGCCGCTCCTGCCTATCTATGTCCTACTTATGCTTCCAAGCCTGGTAGTGGACGTGGCGCTTCCTTCCTCCAGGCTGCTTTGGCGTGCTGTGTTACCCTGTGCTTGGC----ACTGACATTCATCCTCTTGCTATTGGACTGCGTCCACTGACAAGGCTGTTTAATCTACTGGCCTGAAAACCCTGGAGGCCAGGACTGTGCCTGTCTTTATCCCTGTAGCCTCCACCAGGCCGAGGAGCGCCCTGAACTAGCACACAACCAGAGTCTATCAAAATGA----AATTGGGGGG--ATTTTGTATGATTTTTCAGGGAGTGAGTCATTTTCGCACATTTTTGTGCCAAGCCAGAAAGACCCAAGTGTAGAATGTACCACTGTTGTAGGTAGTAGCTGTAGCTGTCACAGTACCTTGAACCTAAATATATGGTCTTTCtttttttttcttttttctttttttttttttttttt
  1419. i rheMac2.chr10 I 9570 C 0
  1420. s calJac1.Contig12391 16034 1211 + 45167 AGTAGG----CACTCCAGTGCAGCAAGCTGGCTGCACAGGTGCTGAGGGACTCAGAG--gcagg-agccatcgccgctcctacagttaggaacacgcagtaggagatgatgttgccaggctcctgaaggcagggctccgtgttag-gggtggaggggatgggggaatctgggaccaggaagggcaatgatgtcaaaccagggatggaactgtgcgggagacactgc-----------------cctttgcagggggagggacagcctgtcttcctcc-ggctcccacactccaggcttccgcagtgccccccacagccagggcaaaagggagatggggaaatgtggctcccaacccaacaggccggagcagagcatgggGGCACTGAGGACAAGC-GGCCCGCAGGCTGCACGT-GGTGGATTGTGGTGGGAATGGAAGCGCAAGAAGCATCAGCA-TAAGGGGCTTTCCTAG-TGCTGACACCCAAGTGATGGG-GAGGGGTATTTTATCCTGGGTGGATAAGATTCCTTCTTCAGCCTGTTTCCCTGTGACGTGGAGAAACTGTGAGCAGGGGATCCCTCCATGTGTTCGGCTCTGCCTGTGTG--CATAGGAGAGCCCGGCTGCTTTGGCTGTGGCCATTTCCAGCTCCCATCCCCCCTTGTCACAGCAGGACAGAAGGGCTCTTTGTTACCTGGGAATGGCCGAGAAGGTCACCTG-----------------TCCCCAGGCAGCTGCTGACTGCTCGGAGGCTCCCGGG-TTCTCTGGCAC----TC--TGCATTGGTGGCTGTGCCCC-GCGGGTCCCCCAGCCG--CCTGCCTGTCTGCTTCCCACTTAGGCGCCCTGG-CTGGGAGTGGACGTGGCCCTTCCTTCCTGCCTCCTGCTTCAGCTTGCCGCCTT-CCCTGTGCTTGGC----ACTGACATTCACACTCGTGCTATTGGACTGCGT-CACTGACAAGCCTGTTTCATCCGCTGGCCCGAAAGCCTTGGAGGCAAGGACTGCACGTGTCCTCATCCCTGGAGCCTCCACCAGGCCAAGGAGTGCCCTGCACCAGCGCAGGACCGAGGTCTACCAAAAAGACATCAGCGGGGGGCAGATTTTGTATGATTTTGAAGA-ACTGGGTCATTTTCTCAAATTTTTGTGCCAAGCCAGAAAGACCCGACTGTGGAATGTACCACTGTTGTAGGTAG-AGCTGCAGCTACCACAGTCTCTAGAACCTAAATTCATTGTCTTTCT----------------TTCGCTCTCCTTTTCTTT
  1421. i calJac1.Contig12391 C 0 I 133
  1422. a score=187216.0
  1423. s ponAbe2.chr22 13894503 295 + 46535552 t-gaggtgggat---------------------------------------------------------------------------------------------------------------------------------------------------------------gaacagattctggctctgtcgc------ccatgctggagtgcagtgctgtgatctcggctcactgcagcctctgcctcccgggttcaggcgattctcatgcctcagcctcccgggaagctgggattacaggcacacgccaccacgcctggctaatttttgta-------------------tttttagtagagac-aggtttcaccatgtcggtcagg--------------ctggtctcaagtgatccacctgcctcggcctcccgaagtgctgggattacaggcgtgagccaccacacctgaccGCTTAATATTTTTATAAA
  1424. s hg18.chr22 16165740 295 + 49691432 t-gaggtggggt---------------------------------------------------------------------------------------------------------------------------------------------------------------gaacagagtctggctctgtcgc------ccaggctggagtgcagtgctgcaatctcggctcactgcagcctctgcctcccgggttcaagcgattctcatgcctcagcctcctgggaagctgggattacaggcacgcaccaccacgcctggctaatttttgta-------------------tttttagtagagac-aggtttcaccatgtcagtcagg--------------ctggtctcaagtgatccacctgcctcggcctcccgaagtgctgggattacaggtgtgagccaccacacctgacAGCTTAATATTTTTATAAT
  1425. i hg18.chr22 C 0 C 0
  1426. s panTro2.chr22 16187216 295 + 50165558 t-gaggtggggt---------------------------------------------------------------------------------------------------------------------------------------------------------------gaacagagtctggctctgtcgc------ccaggctggagtgcagtgctgcaatctcggctcactgcagcctctgcctcccgggttcaagcgattctcaagcctcagcctcccgggaagctgggattacaggcacgcaccaccacgcccggctaatttttgta-------------------tttttagtagagac-aggtttcaccatgtcggtcagg--------------ctggtctcaagtgatccacctgcctcggcctcccgaagtgctgggattacaggtgtgagccaccacacctgaccACTTAATATTTTTATAAT
  1427. i panTro2.chr22 C 0 C 0
  1428. s rheMac2.chr10 61975717 295 + 94855758 t-gaggtcgggg---------------------------------------------------------------------------------------------------------------------------------------------------------------gaagaggatctggctctgtcgc------ccgggctggagtgcagtggtgagatctccgctcaccgcagcctctgcctcctgggttcaagcgattctcatgcctcagcctccggggaagctgggcttacaggcgcccaccaccatgcccggctaattttttaa-------------------tttttagtagagac-aggtttcaccatgtgggtcagg--------------ctggtctcaagtgatccacctgcctcggcctcccgaagtgctggaatcacaggcatgagccaccacacctgacAGCttaatatttttataat
  1429. i rheMac2.chr10 C 0 C 0
  1430. s calJac1.Contig12391 17383 472 + 45167 tagagatgggtttcaccacattgaccaggctggtctcaagtaatccacctgccttgtcctcccaaaatgctgggattacaggcatgagctatcacacctgTCTTGCttaatatttttaaaataattaCATTACttattttattttatttttatttttattttatttttttgagacagagtcttgttctgtcgccaggcaccaggctggagtgcagcg-----atctcggctcactgcaacctctgcctccggggtgcaagcaattctcctgcctcagcctcccaagtagctgagattacaggcatgcgccaccacacccagctaatttttgtattttttttttcttttctttttttttttaaagatggggtttcaccgtgatggccaggttggttttgaactcctgatctcaggtgatccacccacctaggcctcccaacgtgctaggattacaggcgtgagccaccacacccggcc------------------
  1431. i calJac1.Contig12391 I 133 I 133
  1432. a score=94761.0
  1433. s ponAbe2.chr22 13894798 123 + 46535552 AATGACATTAC-TTTTTAAGATCGTTGAGCTCAATTCTAAGGAAAATGCTTACTGAACTACCTGAGAGGCACAGTGCATCATGGTCCCCTGGAGGCCTCTTCAGTCCCCACTGCAGAGCCCAGT
  1434. s calJac1.Contig12391 17988 111 + 45167 AATTACATTGCTTTTTTAAGATTATTGAGCTCAATGCTAAG-------------GAGCCACCTGAGAGGCACAGTGCACCATGGTCCCGTGGAGGCCTCTCCAGTCCCCAAGGTAGAGCCCAGA
  1435. i calJac1.Contig12391 I 133 C 0
  1436. s rheMac2.chr10 61976012 123 + 94855758 aattaCATTAC-TTTTTAAGATCGTTGAGCTCAATTCTAAGGAAAATGCTTACTGAACTACCTGAGAGGCACAGTGCATCCCGGTCCCCTGGAGGCCTCTCCAGTCCCCACTGCGGAGCCCAGT
  1437. i rheMac2.chr10 C 0 C 0
  1438. s panTro2.chr22 16187511 123 + 50165558 AATTGCATTAC-TTTTTAAGACTGTTGAGCTCAATTCTAAGGAAAATGCTTACTGAACTACCTGAGAGGCACAGTGCATCATGGTCCCCTGGAGGCCTCTCCAGTCCCCACTGCGGAGCCCAGT
  1439. i panTro2.chr22 C 0 C 0
  1440. s hg18.chr22 16166035 123 + 49691432 AATTGCATTAC-TTTTTAAGATTGTTGAGCTCAATTCTAAGGAAAATGCTTACTGAACTACCTGAGAGGCACAGTGCATCATGGTCCCCTGGAGGCCTCTCCAGTCCCCACTGCGGAGCCCAGT
  1441. i hg18.chr22 C 0 C 0
  1442. a score=173890.0
  1443. s ponAbe2.chr22 13894921 187 + 46535552 GCTCAAGTGCACGGCTCTCAGGCCCTCCCAGCACCACCCTGCCAAGGCAAGCTGGCGTGCTACTTTCGGAGAACAGGAGAAGCTAGGGAGAATGAGGCAGCCAGGGAGGCTCCCCTTTTCTCTGACTTAAGTTTCTTCTACCCTGTCAGGTTGATCTCTTCCCTGCTCCTAGCATTTGATCATCCCC
  1444. s hg18.chr22 16166158 187 + 49691432 GCTCAAGTGCACAGCTCTCAGGCCCTCCCAGCACCACCCTGCCAAGGCAAGCTGGCATGCTACTTTCGGAGAACAGGAGAAGCTAGGGAGAATGAGGCAGCCAGGGAGGCTCCCCTTTTCTCTGACTTAAGTTTCTTCTACCCTGTCAGGTTGATCTCTTCCCTGCTCCTAGCATTTGATCATCCCC
  1445. i hg18.chr22 C 0 C 0
  1446. s panTro2.chr22 16187634 187 + 50165558 GCTCAAGTGCACGGCTCTCAGGCCCTCCCAGCACCACCCTGCCAAGGCAAGCTGGCATGCTACTTTCGGAGAACAGGAGAAGCTAGGGAGAATGAGGCAGCCAGGGAGGCTCCCCTTTTCTCTGACTTAAGTTTCTTCTACCCCGTCAGGTTGATCTCTTCCCTGCTCCTAGCATTTGATCATCCCC
  1447. i panTro2.chr22 C 0 C 0
  1448. s rheMac2.chr10 61976135 186 + 94855758 GCTCAAGTGCACGGCTCTCAGGCCCTCCCAGCGCCACCCTGCCGATGCAAGCTGGCGTGCTACTTTCGGCGAACAGGAGCAGCTAGGGAGAATGAGGCAGCCAGGGAGCCT-CCCTTTTCTCTGACTTAAGTTTCTTCTACCCTGTCACGTTGATCTCTTGCCTGCTCCTAGCATTTGATCATCTCC
  1449. i rheMac2.chr10 C 0 C 0
  1450. s calJac1.Contig12391 18099 186 + 45167 GCTCAAGTGCACAGCTCTCAGGTCCTCCTAGCCCCACCCTGCCGAGGCACGCTGGCCTGCTACTTTCAGAGAACAGGAGCAGCTGGGGAGAATGAGGCAGCCAGGGAGCCT-CCCTTTTCTCTGATTTAAATTTCCTCCACCCTGTCCGGCTGATCTCTTGCCTGTTCCTCACATTTGATCATCTGC
  1451. i calJac1.Contig12391 C 0 C 0
  1452. a score=132576.0
  1453. s ponAbe2.chr22 13895108 127 + 46535552 TTGGAACCAGGTTAATTGCTTTTGGGGCTTTTTGCTTGTTCAGATAACAGTCTGGTATCATCTTCAAAGGCCAAATGTCTGGAAGAGAAACAAGATGACTTCTAATAATTTACCAGCCTCTGCCTCT
  1454. s hg18.chr22 16166345 127 + 49691432 TTGGAACCACGTTAATTGTTTTTGGGGCTTTTTGCTTGTTCAGATAACAGTCTGGTATCATCTTCAAAGGCCAAATGTCTGGAAGAGAAACAAGATGACTTCTAATAATTTACCAGCCTCTGCCTCT
  1455. i hg18.chr22 C 0 C 0
  1456. s panTro2.chr22 16187821 127 + 50165558 TTGGAACCACGTTAATTGTTTTTGGGGCTTTTTGCTTGTTCAGATAACAGTCTGGTATCATCTTCAAAGGCCAAATGTCTGGAAGAGAAACAAGATGACTTCTAATAATTTACCAGCCTCTGCCTCT
  1457. i panTro2.chr22 C 0 C 0
  1458. s rheMac2.chr10 61976321 127 + 94855758 TTGGAACCAGGTTAATTGCTTTTGGGGCTTTTTGCTTATTCAGATAACAGTCTGGTATCATCTTCAAAGGCCAAATGTCTGGAAGAGAAACAAGATGACTTCGAATAATTTACCGGCCTCTGCCTCT
  1459. i rheMac2.chr10 C 0 C 0
  1460. s calJac1.Contig12391 18285 127 + 45167 TTGGAACCAGGTTAATTGCTTTTGGGGCTTTTTGCTTGCTCAGATAACAGTCTGGTATCATCTTCAAAGGCCAAATGTCTGGAAGAGAAGCAAGATGACTTCTAATAATTTACCGGCCTCTGCCTCT
  1461. i calJac1.Contig12391 C 0 C 0
  1462. a score=420541.0
  1463. s ponAbe2.chr22 13895235 558 + 46535552 GATTAAGAATTCTGGACACTCTAACTTATGGGGCCTGTTATTAGGAAGCTCAAAGTTTTAATTAGAAAGGGTGAGGAGATTTGTGCATTAAGAAGGGTTTAGCAGTTACTCTTAGTTTTCTCTGGGAACACTCTAGTATGTAAGAAAAGAAAAAATATATAAAAGGGGCTAAGAAGTGTCTGACCCAATGGGTATTTTATTTGTTTGT-TTGCATTTTAAGttgttgttgt------------tgttgagacagagtctcactctgtcacccaggctggagtgcagtggcacagtcttgg------------------ctcactgcaacctctgactcctg---tcaagtgattctcgtgcctcagcctcccaaggagctgggactacaggtgtccaccatcacacccagctaa-------------ttttttttttttttttgtattttttggtagagatggagtttcaccatgttggccaggctggtctcaaactcctgacctcaagtgatcctcctgaataggcctccaaaagtgctgggattacaggtgtgagccaccgtgcccagACC-TGAGGTTTTTGTTTGTTGTTTGTTTGTTTTCT
  1464. s hg18.chr22 16166472 560 + 49691432 GATTAAGAATTCTGGACACTTTAACTTATGGGGCCTATTATTAGGAAGCTCAAAGTTTTAATTAGAAAGGGTGAGGAGATTTGTGCATTAAGAAGGGTTTAGCAGTTACTCTTAGTTTTCTCGGGGAACACTCTAGTATGTAAGAAAAGAAAAAATATATAAAAGGGGCTGAGAAGTGTCTGACCCAATGGGTATTTTATTTGTTTGT-TTGCATTTTAAGttgttgttgt------------tgttgagacagagtctcactctgtcacccaggctggagtgtagtggcacagtcttgg------------------ctcactgcaacctctgactcccgggttcaagtgattctcgtgcctcagcctcccaaggagctgggactacaggtgcccgccatcacacccagcta--------------ttttttttttttttttgtattttttggtagagatggagtttcgccatgttggccagactggtctcaaactcctgacctcaagtgatcctcctgactaggcctccaaaagtgctgggattacaggtgtgagccaccgtgcccagACC-TGAAGTTTTTGTTTGTTGTTTGTTTGTTTTCT
  1465. i hg18.chr22 C 0 C 0
  1466. s panTro2.chr22 16187948 574 + 50165558 GATTAAGAATTCTGGACACTTTAACTTATGGGGCCTATTATTAGGAAGCTCAAAGTTTTAATTAGAAAGGGTGAGGAGATTTGTGCATTAAGAAGGGTTTAGCAGCTACTCTTAGTTTTCTCGGGGAACACTCTAGTATGTAAGAAAAGAAAAAATATATAAAAGGGGCTAAGAAGTGTCTGACCCAATGGGTATTTTATTTGTTTGT-TTGCATTTTAAGttgttgttgt------------tgttgagacagagtctcactctgtcacccaggctggagtgtagtggcacagtcttgg------------------ctcactgcaacctctgactcccgggttcaagtgattctcgtgcctcagcctcccaagctgctgggactacaggtgcccgccatcacacccagctaatttttttttttttttttttttttttttttgtattttttggtagagatggagtttcgccatgttggccagactggtctcaaactcctgacctcaagtgatcctcctgactaggcctccaaaagtgctgggattacaggtgtgagccaccgtgcccagACC-TGAAGTTTTTGTTTGTTATTTGTTTGTTTTCT
  1467. i panTro2.chr22 C 0 C 0
  1468. s rheMac2.chr10 61976448 586 + 94855758 GATTAAGAATTCTGGACACTTTAACTTATGGAGCCTGTTATTAGGAAGCTCCTAGTTTTAATTAGAAAGGGTGAGGAGATGTGTGTATTAAGAAGGGTTTAGCAGTTACTCTTGGTTTTCTCTGGGAACACTCTAGTATGTTAGAAAAGAAAAAATATATAAAAGGGGCTAAGAAGTGTCTGACCCAACGGTTACTTTATTTGCTTGT-TTGCATTTTAAgttgttattgttgttgttgttgatgttgagacagagtctcactctgtcacccaggctggagtgcagtggcatgatcttggctcactgcaacctctgacctcactgcaacctctgactcccgtgttcaagtgattctcgtgcctcagcctcccacagagctgggactacaggcgcccgccatcacacccagctaa---------------ttttttttttttttgtattttttggtagagatggaatttcaccatgttggccaggctggtctcaaactccttacctcaagtgatccgcctgactaggcctccaaaagtgctgggattacaggtatgagccgccatgctcagACC-TGAAGTTTTTGTTTG---TCTGTTTGTTTTTT
  1469. i rheMac2.chr10 C 0 C 0
  1470. s calJac1.Contig12391 18412 540 + 45167 GATGAGGAATTCTGGACACTTTAACTTCTGGGACCTGTTCTTAGGAAGCTCAAAGTTTTGATTAGAAAAGGGGAGGAGATCTGTGCAGTAGGAAGGGCTCAGCAGT--------------TCCGGGAACACCCTACAATATAAGAAAAGAAAAAATGCATAAAAGGGACTAAGAAGTGTCTGACCCAGTGGGTATTTTATTTGTTTGCAGtttattttatgttattttt--------------ttttgagacagggtctcactctgtcacccagaatggagggcagtggtgcgatctcag------------------ctcactgcaacctccgactcccaggttcaagtgattctcctgcctcagcctcccaagtagctgggactacaggcacctgccaccatgttcggctaa--------ctttttttttttttttttttggtatgttttgatagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcaagtgacccggctgcctcggcctccaaaagtgctgggattgcaggtgtgagccatcgcgctcagccCTTAAGGTTTTTTGTTGTTGTT------------
  1471. i calJac1.Contig12391 C 0 I 316
  1472. a score=945580.0
  1473. s ponAbe2.chr22 13895793 1273 + 46535552 AATTTTGAAGTGAAAGAGCAGTTTCTGGGTGACAGTCTCATTACTCCCCGttt---ttgttgttgttgtttttgagacagagtctcaccttgtcacccaggctggagtgcagtggcgtgatctcagctcactgcaacctctgcctcccaggttcaagcaatt---ctgcctcagcctcccgagtagctgggattacaggcatacgccaccatgcccggctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctgatctcgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggACCCCATTACTCCCTTTTAAGAGTTCCCTTATCAGCAAAGAAACACCAAACTCACCACGATAGTGTAGGAAGCTGGTTCGAGATCAATTGTCTTTGTGTGTTGATCTGGAAAATATATCAGACAACTTAGCTGGAGAATGAAGGTAGTATTTTCTACTGCTTTCTCTGGGGTGTTCTAGACACTGGCACTGGAAATAGCTTTGGTGTCCTGAAGAGCCTTGCACAGTAGGGAGCCCTAATGTTTGCTGATAAACAAATTCCACTGTGATTTCTTGGGGGTATATTTCCTGTCTTCTTTACTCTGCAATCAGCCGAAAGTATGCCGGCGATGGCTGTTGACTAGCAGTAGCTAACAGTGCCTAAGACTTTTTctctggaatcagactgcctggtttgaatcctgggtccaccaatgaagagctgcaggacctggggcaagttgctcttgacgcttgtttcctctcctgtGTGTTCTAATATTTTGAATAGAGAGTACTAACTAATAGGAAGAGAGCACATCAGACCTTCCCCACCATGGCCCAAGAATGTGGAATCACATTCTTGTCAATCTTGTCAGCTCACGGAGTATGAGCagttatctattgctgtgtaacagatgattagaaattgagcttcaaggccaggcgcagtggctcatgcctgtaatcccaacac--tgggaggccaaggcgggcagatcacctgaggtcaggagtttgagaccagcctggcctatgtggtgaaaccccgaccctattaaaaatacaaaaattagccaagcatagtggtggacgcctgtaatcccagctactcgggag-gctgaggcaggagaatcgcttgaacctgggaggcag-ggttccagtgagccaagattgtgccattgcacaccagcctgggcgac-agagcgagactccgtctcaaaaaaaaa
  1474. s hg18.chr22 16167032 1281 + 49691432 AACTTTGAAGTGAAAGAGCAGTTTCTGGGTGACAGTCTCATTACTCTTCAtttttgttgttgttgttgtttttgagacagagtctcactttgtcgcccaggctggagtacagtggcgtgatctcagctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggtgcgtgccaccatgcccagctaatttttgtatttttagtagcgatggggtttcaccatgctggccaggctgatctcgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcacccggACCCCATTACTCCCTTTTAAGAGTTCCCTTATCAGCAAAGAAACACCAAACTCACCAAGATAGTGTAGGAAGCTGGTTCGAGATCAATTGTCTTTGTGTGTTGATCTGGAAAATATATCAGAAAACTTAGCTGGAGAATGAAGGTAGTATTTTCTACTGTTTTCTCTGGGATGTTCTAGACACTGGCACTGGAAATAGCTCTGGTGGCCTGAAGAGCCTTGCACAGTAGGGAGCCCTAATGTTTGCTGATAAACAAATCCCACTGTGATTTGTTGGGGGTATATTTCCTGTCTTCTTTACTCTGCAATCAGCCAAAAGTATGCCGGTGATGGTTGTTGACTAGCAGTAGCTAACAGTGCCTAAGACTTTTTctctggaatcagactgcctggtttgaatcctgggtccaccaatgaggagctgcaggacctggggcaagttgctcttgacgcttatttcctctcctgtGTGTTCTAATATTTTGAATAGAGAGTACTAACTAACAGGAAGAGAGCACATCAGACCTTCCCCACCATGGCCCAAGAATGTGGAATCACATTCTTGTCAATATTGTCAGCTCACAGAGTATTATCAGTTATCTATTGCTGTGTAATAGATGATTAGAAATTGAGCTGCAAggccaggcgcagtggctcactcctgtaatcccaacactttgggaggccaaggccggcagagcacctgaggtcgggagtttgagaccagcctggcctacatggtgaaaccccgtccctattaaaaatacaaaaattagccaagcgtggtggtggatgcctgtaatcccagctactagcgag-gctgaggcaggagaatcgcttgaacccgggaggcgg-ggtttcagtgagccgagattgtgccattgcacaccagcctgggcgac-gaagcgaggctccgtctcaaaaaagaa
  1475. i hg18.chr22 C 0 C 0
  1476. s panTro2.chr22 16188522 1274 + 50165558 AACTTTGAAGTGAAAGAGCAGTTTCTGGGTGACAGTCTCATTACTCCTCAtttttgttgttgttgttgtttttgagacagagtcttactttgtcgcccaggctggagtgcagtggcgtgatctcagctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggtgcgtgccaccatgcccagctaatttttgtatttttagtagagatgggatttcaccatgttggccaggctgatctcgaactcctgacctcaagtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggACCCCATTACTCCCTTTTAAGAGTTCCCTTATCAGCAAAGAAACACCAAACTCACCACGATAGTGTAGGAAGCTGATTCGAGATCAATTGTCTTTGTGTGTTGATCTGGAAAATATATCAGAAAACTTAGCTGGAGAATGAAGGTAGTATTTTCTACTGCTTTCTCTAGGATGTTCTAGACACTGGCACTGGAAATAGCTCTGGTGGCCTGAAGAGCCTTGCACACTAGGGAGCCCTAATGTTTGCTGATAAACAAATCCCACTGTGATTTGTTGGGGGTATATTTCCTGTCTTCTTTACTCTGCAATCAGCCAAAAGTATGCCGGTGATGGTTGTTGACTAGCAGTAGCTAACAGTGCCTAAGACTTTTTctctggaatcagactgcctggtttgaatcctgggtccaccaatgaggagctgcaggacctggggcaagttgctcttgacgcttgtttcctctcctgtgtgttctaatattttgaatagagagtactaactaacaGGAAGAGAGCACATCAGACCTTCCCCACCATGGCCCAAGAATGTGGAATCACATTCTTGTCAATCTTGTCAGCTCACAGAGTATtatcagttatctattgctgtgtaacagatgattagaaattgagctgcaaggccaggcgcagtggctcactcctgtaatcccaacactttgggatgccaaggccggcagagcacctgaggtcgggagtttgagaccagcctggcctacatggtgaaaccccgtccctattaaaaatacaaaaattagccaagcgtggtggtggacg-ctgtaatcccagctactagcgag-gctgaggcaggagaatcgcttgaacccgggaggcgg-ggtttcagtgagccgagattgtgccattgcacaccagcctgggctac-aaagcgaggctctgtctcaaa------
  1477. i panTro2.chr22 C 0 C 0
  1478. s rheMac2.chr10 61977034 1201 + 94855758 AATTTTTAAGTGAAGGAGCAGTTTCTGGGTAACAGTCTCATTACTCTCCGGTTTTtttgttgttgttgttgttttgagacagtctcactttgtcacccaggctggagtgcagtggtgtgat--------------------------------------------------------------tagctgggattacaggcatctgccaccacacctggctaatttttgtgtttttagtggagacagggtttcaccatgttggccaggctgatcttgaactcctcacctcaagtgatccgccggcctcagcctcccaaagtgctggagatacaggcgtcagccactgcgcccagcTCCCATTACTCCATTTTAAGAGTTCCCTTATCAGCAAAGAAACACCAAACTCGCTAGGATAGTGTAGGAAGCTGGTTTGAGATCAATTGTCTTTGTGTGTTGATCTGGAAAATGTATCAGAAAACTTAGCTGGAGAATAAAGGTAGTATTTTCTACTGCTTTCTCTGGGGTGTTCTAGACACTGGCAGTGGAAATAGCTTTGGTGGCCTGAAGAGCCTTGCTCGGTAGGGAGCCCTAATGTTTGCTGATA-------------------TGTTAGGGGTGTGTTTCCTGGCCTCTTCACTCTGCAATCAGCCAGAAGTGTGCCGGCGATGGCTGTTGACTAGCAGTAGCTAACAGTGTCTAGGACTTTTTctctggaatcagactgcctggtttgaatcctgggtccaccaatgaggagctgcaggacctggggcaagttgctcttgatacttgtttcctcTCCTCTGTGCTCTAACATTTCGAATAGAGAGTACTAACTAACAGACAGAGAGCACATCAGACCTTCCCCACCATGGCCCAAGAATGTGGAATCACATTCTTGTCAATCTTGTCAGCTTGCGGAGtgt-atcagtcatccattactgtgcaacagatgattagaaattgagctgcaaggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcagatcacctgaggtcgggagtttgagaccagcctggcctacatggtgaaaccccatccctattaaaaatacaaaaattagccaagcgtggtggtggacgcctgtaatcccagctactagggggagctgaggcaggagaatggcgttaacccgggaggtggaggtttcagtgagctgagattgtgccattgcactccggcctgggtgac-agagcaagactctgtctcaaaaaaaaa
  1479. i rheMac2.chr10 C 0 I 182
  1480. s calJac1.Contig12391 19268 1242 + 45167 AATTTTTAAGTGAAGGAGCATTTTCTGGGTGACAGTCTCATTACTCtttttttcttttttttttg-------------agagtctcactttgtcacccaggctggagtgcagtagcgtgac--cagctcactgcaacctctgcct-ccaggttcaggcaattctcctgcctcagcctcccaagcagctgggattata-gcatctgctaccaagtctggctaaattttgtatttttagtagagatggggtttcactatgttggccaggctgatcttgaactcctgaccgcaagtgatccacctgccttggcctccaaaattgctgggattacaggtgtgagccactgcgcccagccCCCATTTCTCCCTTTTAGGAGTTCCCTTAACAGCAAAGAAACACCAAACTCACCACAATCACATAGGACGCTGGTTTGAGATCAACTGTCTTTGTGTGTAGATCTGGAAAATATATCAGAAAACTTAGCCGGAGAATGAAGGTGGCATTTTCTACCGCTTTCTCGGCGATGTTCTAGACACTGGCATTGGAGATAACATAGGTAGTCTGAGGAACCTTGCACAGGAGGGAGCCCTAACATTTGCTGATAAATAAATCCCGCCCTGATTTGTTGGGG---TATTT-CTGGCTTCTTTCCTCTGACATCAGCCGAAAGTGTGCAGGCAAAGGCTGTTGGCTCGCAGCAGCTAACGGTGTCTAGGACTTTTCctctggaatcagactgcctggtttgaatcctgggtccaccaatgaggagctgcaggacctggggcaagttg---------ctggtttcccctcctgtgtgccctcaggtttccAACAGAGAGTACTAACAGAC------AGAGCACATCAGACCTTCCCCGCTGCGGCCC----CCGGGAAATCACATTCTTGTTAATCTTGTCAGCTCACAGAGTGT-GTCGGTTAGCTATTGCTGTGTAACAGATGATTAGAAATTGAGCTGCAAggccaggcacagtggctcatgcctgtaatcccagcactttgggaggacaaggcgggcagatcacctgaggtcaggagatcgagaccagcctggccaacatggtgaaaccctgtgtttattcaaaatacaaaaattagctgggcgtggtggcgcgtgcctgtagtccgagatactcaggag-gctgaggcaggagaattgcctgaacccaggaggcggaggttgcggtgagccaagatcgaaccattgtactccagcctgggtaacaagaccgaaactccatctcaaaaaaaaa
  1481. i calJac1.Contig12391 I 316 C 0
  1482. a score=-4036.0
  1483. s ponAbe2.chr22 13897066 13 + 46535552 aaaa----------------------------------------------------------aaaaaaaga-
  1484. s hg18.chr22 16168313 71 + 49691432 agaaagaaagaaagagagagagagagagggagggagagggagagagagagagagaaagaaagaaagaaaga-
  1485. i hg18.chr22 C 0 C 0
  1486. s panTro2.chr22 16189796 9 + 50165558 --------------------------------------------------------------aaagaaaga-
  1487. i panTro2.chr22 C 0 C 0
  1488. s rheMac2.chr10 61978417 13 + 94855758 ----------------------------------------------------------aaagaaagaaaga-
  1489. i rheMac2.chr10 I 182 C 0
  1490. s calJac1.Contig12391 20510 13 + 45167 -----------------------------------------------------------aaaaagaaaagaa
  1491. i calJac1.Contig12391 C 0 I 5
  1492. a score=110884.0
  1493. s ponAbe2.chr22 13898766 175 + 46535552 ttaatgtagaccaaagaaaacacatctgggccaatatccagctcttagggcaccagtgtgcaatctctgGCTTAAATACATGtgtatgtacgcatgtatacatgtgcctgcacgcatgtgtatgtatacatgtgtatgtatgcatatgtatgtgtgcacgaagatgtatgtatgt
  1494. s panTro2.chr22 16191272 155 + 50165558 ttaatgtagaccaaagaaaacacatctgggccaatatccagctcttagggcaccagtgtgcaatctctgGCTTAAATACATGtgtatgtatgcatgtatacatgtgcctgcatgcatgtatatgtatacatgtgtatgtatccatatgtatg--------------------tac
  1495. i panTro2.chr22 C 0 C 0
  1496. s rheMac2.chr10 61979989 173 + 94855758 ttaatgtagaccaaagaaaacacatctgggccaatatccagctctcagggcaccagtgtgcaatctctgGCTTAAATACATGTGTATGTATGCATGTATACATGTGCCTGCATGCACAtatatgtatacatgtatatacatgcacatgtatgtgcgcatgaagatgtatg--tat
  1497. i rheMac2.chr10 C 0 C 0
  1498. s hg18.chr22 16169890 155 + 49691432 ttaatgtagaccaaagaaaacacatctgggccaatatccagctcttagggcaccagtgtgcaatctctgGCTTAAATACATGtgtatgtatgcatgtatacatgtgcctgcatgcatgtatatgtatacatgtgtatgtatccatatgtatg--------------------tac
  1499. i hg18.chr22 C 0 C 0
  1500. s calJac1.Contig12391 20528 139 + 45167 TTAATGCAGACCAAAGAAAACACAACTGGGCCCTTATCCAGCTCTCAGGCCACCAGCGTGCAATCTCTGGCTTAAATACatgtgtgtatatgcatgtgta--------tgcatgcacatgtatgtgtgcatgaagaggcatgtatgt----------------------------
  1501. i calJac1.Contig12391 I 5 C 0
  1502. a score=402647.0
  1503. s ponAbe2.chr22 13901072 533 + 46535552 gcatatacgcacacgtacatatgtatatgcatgtgtgtgtacttatttatgcatgcacatgtatgcatatgtacacacTGGCCTTGCTCTTGAACACAAGCCCAAGTTTCAGCTCTTTACAGTCTAAAGTGCAGGCCATCTCCTGACGAGGCTGTCTGCACTCAGGCGTTCCCGCGCTCTTCTCCCCTTCACTCTCGCTCCTACCTCACCCCTACTTCGTGCCTGCCTCCTACAAAGCCCCACAATACCCTTGGCCAGGACAATTGGCTGGACCCCTGCTCAGAGAACCTCACACACCAGTCTCCGTGA-ACATGAAAAGCTGGCTGGAAAAGGGACGGACTTGGGGACATGTTCTTCTGTTGGACCACACTTCAAGGATGTGATGGAGCTTGAGGAGACACCTGTGCAGTCACGTTGTCTCAAACCAACAGCTTTGCAGAAACTCAGTAATGACAACCAgacagtgtggcagagtggcgggagcaggcagtttggattcaaacatgtgtgggctcaactccaggctctagtac
  1504. s hg18.chr22 16170099 533 + 49691432 gcatatgcgcacacatacatatgtatatgcatgtgtgtgtacttatttatgcatgcacatgtatgcatatgtacaCACTGGCCTTACTCTTGAACACAAGCCCAAGTTTCAGCTCTTTACAGTCTAAAGTGCAGGCCCTCTCCTGACAAGGCTGTCTGCACTCAGGCATTCCCACGCTCTTCTCCCCTTCACTCTTACTCCTACCTCACCCCTACCTCGTGCCTGCCTCCTACAAAGCCCCACAATACCCATGGCCAGGACAATTGGCTGGACCCCTGCTCAGAGAACCTCACACACCAGTCTCCGTGA-ACATGAAAAGCTGGTTGGAAAAGGGACAGACTTGGGGACATGTTCTTCTGTTGGACCACGCTTCAAGGATGTGATGGAGCTTGAGGAGACACCTGTGCAGTCACGTTGTCTCAAACCAACAGCTTTGCGGAAACTCAGTAATGACAACCAgacagtgtggcagagtggcaggagcaggcagtttggattcaagcatgtgtgggctcaactccaggctctagtac
  1505. i hg18.chr22 C 0 C 0
  1506. s panTro2.chr22 16191481 533 + 50165558 gcatatgcacacacgtacatatgtatatgcatgtgtgtgtacttatttatgcatgCACGTGTATGCATATGTACACACTGGCCTTACTCTTGAACACAAGCCCAAGTTTCAGCTCTTCACAGTCTAAAGTGCAGGCTGTCTCCTGACAAGGCTGTCTGCACTCAGGCGTTCCCACGCTCTTCTCCCCTTCACTCTTACTCCTACCTCACCCCTACCTCGTGCCTGCCTCCTACAAAGCCCCACAATACCCATGGCCAGGACAATTGGCTGGACTCCTGCTCAGAGAACCTCACACACCAGTCTCCGTGG-ACATGAAAAGCTGGTTGGAAAAGGGACAGACCTGGGGACATGTTCTTCTGTTGGGCCACGCTTCAAGGATGTGATGGAGCTTGAGGAGACACCTGTGCAGTCACGTTGTCTCAAACCAACAGCTTTGCGGAAACTCAGTAACGACAACCAgacagtgtggcagagtgccgggagcaggcagtttggattcaaacatgtgtgggctcaactccaggctctagtac
  1507. i panTro2.chr22 C 0 C 0
  1508. s rheMac2.chr10 61980352 528 + 94855758 gcatatgcacacacgtacatatgtatatgca--tgtgtgtacttatgtatgcgtgcacatgtgtgcatatgtaCACACTGGCCTCGCTCTTGAACACAAGCCCAAGTTTCAGCTCTTGACAGTCTAAGGTGCAGGCCCTCTCCTGACAAGGCTGTCCGCACTCAGGCGTTCCGGCACTCTTCTCCCCTTCTCTCTTACTCCGACCTCACCCCTACTTCGTGCCTCCCTCCTACAAAGCCCCACAATACCCATGGCCAGGACAATTGGTTGGACCCCTGCTCAGAGAACCTCACACACCAGTCTCTGTGA-ACATGAAAAGCTGGCTGGAAAAGGGATGGACTTGGGGACACG-TCTTCTGTTGGACCACGCTTCAGGGATGTGATGGAGCTTGAGGAGACACCTGTGCAGTCACATTGTCTCAAACCAACAGCTTTGCGGAAACTC--TAATGACAACCAgacagtgtggcagactggcaggagcaggcagtttggattcaaacaggtgtgggctcaactccaggctctagtaa
  1509. i rheMac2.chr10 C 0 C 0
  1510. s calJac1.Contig12391 20667 485 + 45167 gcacgtttgcacgtgtatatatttatatgtatgtgtgtataggt--------------gtgtatgcatgtgtgCACACTAGCCTTGCTCTTGAATACAAGCTCAGGTTTCAGCTCTTCGCAGTCTAAGGCGCAGGCCCTCTCCTGACAAGGCCGTCTGCACCCAGGCGTTCCCAGGCTCTTCTCCCCTTCTCTCTTACTCCTGCCCCACCCCTACTTCGTGCCTGCCTTCTACAAACGCCCACAACACCCATGGCCAGGACAATTGGTTGGAACCCTGATCACAGCACCTCAGATGCCAGTCTCCGTGACACATGAAAGTCTGGCTGAAAAAGGGAGGGACTTGGGGACATG-TCTTCTGTTGGACCAAGCTTCAAGGACGTGATGGAGCTTAAGTAGATACCTGCGGGGTCACGTTGTTTCAAACCAACAGCTTTGTGGAAACTC-------------AGGCAGTGTG-------GGCAGGGGCAGGCAGTTTGGATTCAATCAGGTGTGGGCACTAAT--------------
  1511. i calJac1.Contig12391 C 0 I 360
  1512. a score=437752.0
  1513. s ponAbe2.chr22 13901664 575 + 46535552 tacTGTG-----------CAGATAATATTTTTATGAAGTGCCTCTAACCTGGAATGGCATCAGTAATCGTGGCAGGGTCTATGACAGACCCAGTTCTACCATTTCTTCGTCTGAAATCTCTCTTGGATTTTTCCTTCTCATTACTCCCGGGCCTGGCCTCACCTGCGGGTGCCTGAGTCTCTGACCCTGTCTTCTGGCAGCTCTCCTGCCAGAGGTGGGCTCTGCCCCACTCAACACCACCTTCCCCTGTCTTTCAGCTTTGTCCGTGTGCAGCCAGACCAACCTTCCTTGGTCGCCTCTCTATTTCGCCAAGCCACTTTCGGGTTGTCATGCTGCCTGCCAGTTGCCTGTGGCACTGGGCACAATGCCTCTGTGCTGAGCCTCTCACAGCCTTAGCCTCCTCCTCAGCATCCCTGGCCCACACATTCCCATCTGGACAACCCACCTCTTCACTGCCCTCCAATTCCTGGGCTCCTGTC--------------------------------------------------------------------------------------------ttttttttttttttttgagacggagtctcgcttt--gt-cccagactaaaatgcagtggcacgatctcggctcactacagtctctgcctcccgggttcaagcaattcttg
  1514. s hg18.chr22 16170691 569 + 49691432 tacTGTG-----------CAGATAATATTTTCATGAAGTGCCTCTAACCTAGAATGGCATCAGTAATCGTGGCAGGGACTATGACAGACCCACTTCTACCATTTCTTCGTCTGAAATCTCTCTTGGATTTTTCCTTCTCATTACTCCCAGGCCTGGCCTCACCTGCGGGTGCCTGAGTCTCTGACCCTGTCTTCTGGCAGCTCTCGTGCCAGAAGTGGGCTCTGCCCCACTCAACACCACTTTCCCCTGTCTTTCAGCTCTGTCCGTGTGCAGCCAGACCAACCTTCCTTGGTCGCCTCTCTATTTCGCCAAGCCACTTTCCGGTTGTCATGCTGCCTCCCAGTTGCCTGTGGCACTGGGCACAATGCCTCTGTGCAGAGCCTCTCACAGCCTTAGCCTCCTCCTCAGCATCCCTGGCTCACACATTCCCATCTGGACAACCTACCTCTTCTCTGCCCTCCAGTTCCTGGGCTCCTGTC--------------------------------------------------------------------------------------------------ttttttttttgagacggagtctcgctct--gt-cccagactagaatgcagtggcacgatctcggctcactgcaatctctgcctcccgggttcaagcgattcttg
  1515. i hg18.chr22 C 0 C 0
  1516. s panTro2.chr22 16192073 578 + 50165558 tactgtg-----------cagataatatttttatgaagtgcctctaacctGGAATGGCATCAGTAATCGTGGCAGGGACTATGACAGACCCACTTCTACCATTTCTTCGTCTGAAATCTCTCTTGGATTTTTCCTTCTCATTACTCCCGGGCCTGGCCTCACCTGCGAGTGCCTGAGTCTCTGACCCTGTCTTCTGGCAGCTCTCGTGCCAGAAGTGGGCTCTGCCCCACTCAACACCACCTTCCCCTGTCTTTCAGCTCTGTCCGTGTGCAGCCAGACCAACCTTCCTTGGTCGCCTCTCTATTTCGCCAAGCCACTTTCCGGTTGTCATGCTGCCTCCCAGTTGCCTGTGGCACTGGGCACAATGCCTCTGTGCAGAGCCTCTCACAGCCTTAGCCTCCTGCTCAGCATCCCTGGCCCACACATTCCCAACTGGACAACCTACCTCTTCGCTGCCCTCCAGTTCCTGGGCTCCTGTCttt-----------------------------------------------------------------------------------------ttttttttttttttttgagacggagtctcgctct--gt-cccagactagaatgcagtggcacgatctcggctcactgcaatctctgcctcccgggttcaagcgattcttg
  1517. i panTro2.chr22 C 0 C 0
  1518. s rheMac2.chr10 61980939 574 + 94855758 tactgtg-----------cagataatatttttatgaagtgcctctaacctGGAATGTGATCAGTAATCGTGGCAGGGACTATGACAGACCCAGTTCTACCATTTCTTCGTCTGAGATCTCTCTTGGATTTTTCCTTCTCGTTACTCCCAGGCCTGGCCTCACCTGCGGGTGTCTGAGTCTCTGACCCTGTCTTCTGGCAACTCTCCTGCCAGAGGTGGGCTCCGTCCTACTCAACACCACCTTCCCCTGTCTTTCAGCTCTGGCCGTGTGCAGCCAGACCAACCTTTCTTGGTCACCTCTCTCTTTCGCCAAGCCACTCTCT-GTTGTCATGCTGCCTCTCAGTTGCCTGTGGCACTGGGCACAATGCCTCTGTGCAGAGCCTCTCACAGCCTTAGCCTCCTCCTCAGCATCCCTGGCCCACACATTCCCATCTGGACAACGTACCTCGTCGCTGCCCTCCAATTCCTGGGCTCCTGCC--------------------------------------------------------------------------------------------tttctttttttttttttagacggagtctcgttct--gt-cccaggctagaatgcagtggcacgatctcagctcactgcaatttctgcctcccgggttcaagcgattcttt
  1519. i rheMac2.chr10 C 0 I 109
  1520. s calJac1.Contig12391 21512 667 + 45167 cactgtgcccggccCGTACAGATAATATTTCCATGAGGTGCCTCTAACCTGGAATGGGATCGGTGATCGTGG-AGGGA-TATGGCAGACC--ATTCTACCATTTCTTTGTTTGAAATCTCTCTTGGATTTTTCCTTCTCATTACTCCGTGGCCCGGCCTCACCTGTGGATGCCTGAGCCTCTGACCCTGTCTTCCAGCAGCTCTCCGGCCGGAAGCGGGCTCTGCTCCACTCAGGACCACCTTCCCCTCTCTCTCAGCTCTGTCCGTGTGCAGCCAGACTAACATTCCTTCATCGCCTCTCACTTTTGCCAAGCCACTTTCTGGTTGTCCTGATGCCTCCCAGTAGCCTGTGGCACTGGGTGCAATGCTACTGTGCAGAGCCTCTCACAGCCTGAGCCTCCTCCTTGGCATCCCTGG--CACAGGTTCC--------CAACCTGCCTCTTTGCGGCCCTCCAATTCCTGGGCTCCTGCCTATGTTCCCTGCTGGCTGCCATGTGGTGCACCACCCTCCCTTGATGGAAATCACATGGCCTGTTAAGGCCCCTGCTGGATCACACACACAAGCCttctttttttttttgagacggagtttcgttcttggtacccaggctggagtataatggcgtgatctcggctcactgcaacctccgcctcctgggttcaggcaattctcc
  1521. i calJac1.Contig12391 I 360 C 0
  1522. a score=27657.0
  1523. s ponAbe2.chr22 13902239 33 + 46535552 tgcctcagcctctggagtagctgggattacagg
  1524. s hg18.chr22 16171260 33 + 49691432 tgcctcagcctctggagtagctgggattacagg
  1525. i hg18.chr22 C 0 C 0
  1526. s panTro2.chr22 16192651 33 + 50165558 tgcctcagcctctggagtagctgggattacagg
  1527. i panTro2.chr22 C 0 I 1429
  1528. s rheMac2.chr10 61981622 33 + 94855758 tgcctcagcctcccaagtagctgggactacagg
  1529. i rheMac2.chr10 I 109 C 0
  1530. s calJac1.Contig12391 22179 33 + 45167 tgcctcagcctcctgagtagctgggattagagg
  1531. i calJac1.Contig12391 C 0 C 0
  1532. a score=63696.0
  1533. s ponAbe2.chr22 13902842 82 + 46535552 ataaaGTGGGACAGAATACAACGTTTTGTCTTCCTAAGGAAGGAAAAAGATATTTTTAAAGTGGCACTTGAGCTGGGATTAA
  1534. s hg18.chr22 16171947 82 + 49691432 ataaagtgggacagaatacaactttttgtcttcCTAAGGAAGGAAAAAGATATTTTTAAAGTGGCACTTGAGCTGGGATTAG
  1535. i hg18.chr22 C 0 C 0
  1536. s panTro2.chr22 16194359 82 + 50165558 ataaaGTGGGACAGAATACAACGTTTTGTCTTCCTAAGGAAGGAAAAAGATATTTTTTAAGTGGCACTAGAGCTGGGATTAG
  1537. i panTro2.chr22 C 0 C 0
  1538. s rheMac2.chr10 61982434 82 + 94855758 ataaaGTGGGACAGAATACAACATTTTGTCTTCCTAAGGAAGGAAAAAGATATTTTTAAAGTGGCATTTGAGTTGGGATTAG
  1539. i rheMac2.chr10 C 0 C 0
  1540. s calJac1.Contig12391 22460 78 + 45167 ATAACCTGGGGCAAAATGCAACGTTTTGTCTTCCT----AAGGAAAAATATATTTTAAAAGTGGCATTTGAGCTGGGATTAA
  1541. i calJac1.Contig12391 I 176 C 0
  1542. a score=925333.0
  1543. s ponAbe2.chr22 13903238 1173 + 46535552 aaGGAGGGTCAGGATTTTTCTC-GGGTGAGGTGGGAAAGGTAGAAAGAACACAGTGGGCCTGTTTGGTTGGATTAATCTTCAGCTGTCTTTTACAAGAAATGCATCCCTCCACGTGCCCCTGTGCACAGGGAAGGGCTGCAACCGCCATGTCTGTGCTAAAACTCTGTCCTCCCTGGCCGTAAGTGACACCAGGCACAAGCTGCTACTCAGATCTTCTTACCTGTGAACTTGGAATTGGGGTTCATGGGTGCTGGTTACTCTCTACAACTGAAGACTTAAACTTGGGGATCTAGGAC-GGGAGCCTCCACCATGTGCCAAGCATGT--GGGAGAGGGAGAACGGAACCCAGCCTCACAGTAGAGAAGAGGAGGCCTTCGCCCCGTGGAGACCGTGAGCATTTCTCAGGTTCCGATTTGTTCCTTGTGAAGCCTGACCAGATGTTCCACCATTGGTTTTATGAGGTTTACTCATATCCTTATAATGAGCTTTCCCCTTTTTTTGTTTTATCCGTGTGTGTTTCAGTTACTAAAAACTAAAAGTGTTTGACCAAGACCCAGAGCCCTAAACATCGGAATTTATGAAAAGAGGGGGCTCTGAGACACCCCTTTAACCACAGTACAGTGTGGGAAGTACCTGGACATCAGGCTGGAAGGGCAGGTTGTAGACACATTGTGGAGGCCCTTAAATGCCTTCTATTCAAAGTGGGATAGTATTGTTCACTGTGAACTAAGAACTATGGAGGTTTTGTGCAGATGAGTCATTCACAGCTTCAGAGGTgtgctgcggagagcgaagtctggattgggggtcctcagagcttggattcgatacccgtctggtaaatggcagcattttctggctacatttctagaccttggtcaaattacctaacctctttaccttaagtttctgcgtttataaaatgagaatattaatgcttagctcat-agatttgggggaaaattatatgaaataataagtcggcaaatactaagcactcaaatgttaactgttattattTTTATTTCTCTAAATTCCTGTGACACTTACTGCCAATACCTACACATTAGCCTTACTTATTTTTGAATAATTTCAAGTATGCTGATCTTGTCTCACAAT-AGAACAAAAGCCTCTAT-GCGAGGATAACGTCTTAAAGTCCTTTCCATCTCTCCTAAT
  1544. s calJac1.Contig12391 22538 1158 + 45167 AAGGAGGGTCAGGATTTTTCTA-GGGTGAAGTGGGCAAGGTAGAATGACTGTGGTGGGCCTGTCCGGTCGGATTCATCTTCAGTTGCCTTTTACAACAAATGCA-CCTTCCACGCGCTCCTGCACACGGGGAAGGGCTGCAACAGCCATGTCTGTGCTGAAACTCTGTCCTCCCTGGCCATAAGTGACACT-GGAACAAGCTGCTACTCAGATCTTCT----TGTGAACTTGGAATTGGGGTTCATGCATGCTGATTAGCCTCTACAATTGAAGACTTAAACTTGGGGATATAGGAC-AGGACCCTCCACCGTGGGCCAAGCATGCCAGGAAGAGGGAGAATGAGCCCCAGT-------TAGAGAAGGTGAGGCCGTCATTGCGTGGAAGCCGTGAGCTTTTCTCAGGTTCTGATTCATTCCTCGTGAAGCCTGACCAGATGTCCCACTGTTGGTTTTATGAGATTTCATTATAACCTTATAATGAGCTTTCCCTCTTTTTAG-TTTATCTGTGTGTGTTTCAGTTACTAAAAACCAGAGGTGTTTGACCAAGACCCAGAGGCCTACACACTGGAGTTTATGAAAAGAGGGGGATCTGAGATGCCCCTTTACCCAGAGTACAGTG-GGGAAGTCCCTGGACATCGGGCTGGAAGGGCAGGCTGTAGGCGCATTGTGGAGGACCTTAAACGCCCTCTATGCAGGGTAGGATAGTATTGCTCTCTGTGAACTAAGAACTGTGGAGGTTTTGTGCAGAGGAGTAATTCCCAGCTTCAGAGGTGGGCTGCAAAAAGCAAACTCTGGA-TGGAGG-CCACAGAGCATGGATTTGAGACGCATCT-GTCAGTGGCAGCATTGTCCAGCTTCATTTCTAgactctggtcaaattacctaacctcttgaacttaagtttctgcatttataaaatgagaatattaatgctcagctcataagatttggggggaaattctatgaaataatAAGTTAGCAAATACTAAGCAGTCAAATGTTCACTGTGATTATCTTTAGTTCTCTAAATTCCTGTGACACTTATTGCCGATACCTACATATTACCCTTACTTATGTTTGAATAATTTCAAGTATGCTGATCTTGTCTCACCATCAGACCAAACGCCTCTGT-GCAAAGATGATGTCTAAAACTCTTTTCC-TGTCTCAGAAT
  1545. i calJac1.Contig12391 C 0 C 0
  1546. s rheMac2.chr10 61982838 1177 + 94855758 AAGGAGGATCAGGATTTTTCTAGGGGTGAGGTGGGAAAGCTGGAATGCATGCAGTGGGCCTGTTTGGTTGGATTACTCTTCAGCTGCCTTTTACAAGAAATGCACCCCTCCACTCGCCCCTGTGCACAGGGAGGGGCTGCAACCGCCATGTCTGTGCTAAAACTCTGTCCTCCCCGGCTGTAAGTGACACCAGGCACAAGCTGCTACTCAGATCTTCTTACTTGTGAACTTGGAATTGGGGTTCATGGGTGCTGGTTACTCTCTACAACTGAAGACTTAAACTTGGGGATATAGGACAGGGAGCCTCCACCATGTGCCAAGCATGTGGGGGAGAGGGAGAACGGAACCCAGGCTCACAGCACAGAAGAGGAGGCCATCGCCCTGTGGAAACCGTGAGCATTTCTCGGGTTCCGATTCGTTCCTTGTGAAGCCTGACCAGATGTTCCACCATTGGTTTTATGAGATTTCTTCATATCCTTATAATGAGCTTTCCCCCTTTTTTGGTTTATTTGTGTGTGCTTCAGTTACTAACAACCAAAAGTGTTTGACCGAGACCCAGAGCCCTAAACATCGGAATTTATGAAAAGAGGGGGATCTGAGATGCCCCGTTAACCACACTACAGTGTGGGAAGTACCTGGACATCAGGCTGGAAGGGCAGGTAGTATACACGTTGTGGAGGCCCTTAAAAGCCTTCTATTCAAAGCGGGATAGTATTGCTCACTGTGAACTAAGAACTATGGAGGTTTTGTGCAGATGAGTAATTCACAGCTTCAGAGATGGgctgtggaaagtgaagtctgga-tggggg-ccgcagagcgtggattcgaaacccatctggtaagtggcagcattttccggctgcatttctagaccttggtcaaattacctaacctctttaccttaagtttctgcatttgtaaaatgagaatattaatgcttttctcataagattggggaggaaattatatgaaataataagttggcaaatactaagcactcaaatgttaactgtcattattTTTATTTCTCTATATTCCTGGGACACTTACTGCCAATACCTACACATTAGCCTTACTTATTTTTGAATACTTTCAAGTACGCTGATCTTGTCTCACAATCAGACCAAAAGCCTCTAT-GCAAGGATAACGTCTTAAACTCTTTCCCATCTCTCCTAAT
  1547. i rheMac2.chr10 C 0 C 0
  1548. s panTro2.chr22 16194757 1173 + 50165558 aaaGAGGGTCAGGATTTTTCTA-GGGTGAGGTGGGAGAGGTAGAATGAACGCAGTGGGCCTGTTTGGTTGGATTAATCTTCAGCTGCCTTTTACAAGAAATGCACCCCTCCACGTGCCCCTGTGCACAGGGAAGGGCTGCAACCGCCATGTCTGTGCTAAAACTCCGTCCTCCCTGGCCGTAAGTGACACCAGGCACAAGCTGCTGCTCAGATCTTCTTACCTGTGAACTTGGAATTGGGGTTCATGGGTGCTGGTTACTCTCTACAACTGAAGATTTAAACTTGGGGATCTAGGAC-AGGAGCCTCCACCATGTGCCAAGCATGC--GGGAGAGGGAGAACGGAACCCAGGCTCACAGTAGAGAAGAGCAGGCCATCGCCCCATGGAGAC--TGAGCATTTCTCGGGTTCCGATTTGTCCCTTGTGAAGCCTGACCAGATGTTCCACCATTGGTTTTATGAGATTTACTCATATCCTTATAATGAGCTTTCCCCTTTTTTTGTTTTATCCGTGTGTGTTTCAGTTACTAAAAACCAAAAGTGTTTGACCAAGATCCAGAGCCCTAAACATTGGAATCTATGAAAAGAGGGGGCTCTGAGACACCCCTTTAACCACAGTACAGTGTGGGAAGTACCTGGACATCAGGCTGGAAGGGCAGGTTGTAGACACATTGTGGAGGCCCTTAAATGCCTTCTGTTCAAAGTGGGATAGTATTGCTCACTGTGAACTAAGAACTACGGAGGTTTTGTGCAGATGAGTAATTCACAGCTTCAGaggtgggctgcagagagcgaagtctgga-tggggggcctcggagcttggattcgaaacccatctggtaaatggcagcattttccagctacatttctagaccttggtcaaattacctaacctctttaccttaagtttctgcatttataaaatgagaatattaatgcttagctcataagatttggggggaaattatatgaaataataagttggcaaatactaagcactcaaatgttaactattattattTTTATTTCTCTAAATTCCTGTGACACTTACTGCCAATACCTACACATTAGCCTTACTTATTTTTGAATAATTTCAAGTACGCTGATCTTGTCTCACAATCAGACCAAAAGCCTCTATGGCAAGGATAACGTCTTAAAGTCCTTTCCACCTCTCCTAAT
  1549. i panTro2.chr22 C 0 C 0
  1550. s hg18.chr22 16172345 1174 + 49691432 aaaGAGGGTCAGGATTTTTCTA-GGGTGAGGTGGGAAAGGTAGAATGAACGCAGTGGGCCTGTTTGGTTGGATTAATCTTCAGCTGCCTTTTACAAGAAATGCACCCCTCCACGTGCCCCTGTGCACAGGGAAGGGCTGCAACCGCCATGTCTGTGCTAAAACTCCGTCCTCCCTGGCCGTAAGTGACACCAGGCACAAGCTGCTACTCAGATCTTCTTACTTGTGAACTTGGAATTGGGGTTCATGGGTGCTGGTTACTCTCTACAACTGAAGATTTAAACTTGGGGATCTAGGAC-GGGAGCCTCCACCATGTGCCAAGCATGC--GGGAGAGGGAGAACGGAACCCAGGCTCACAGTAGAGAAGAGCAGGCCATCGCCCCATGGAGACTGTGAGCGTTTCTCGGGTTCCGATTTGTTCCTTGTGAAGCCTGACCAGATGTTCCACCATTGGTTTTATGAGATTTACTCATATCCTTATAATGAGCTTTCCCCTTTTTTTGTTTTATCCGTGTGTGTTTCAGTTACTAAAAACCAAAAGTGTTTGACCAAGACCCAGAGCCCTAAACATCGGAATTTATGAAAAGAGGGGGCTCTGAGACACCCCTTTAACCACAGTACAGTGTGGGAAGTACCTGGACATCAGGCTGGAAGGGCAGGTTGTAGACACGTTGTGGAGGCCCTTAAATGCCTTCTGTTCAAAGTGGGATAGTATTGCTCACTGTGAACTAAGAACTATGGAGGTTTTGTGCAGATGAGTAATTCACAGCTTCAGAGGTGGGCTGCagagagcgaagtctgga-tggggggcctcagagcttggattcgaaacccatctggtaaatggcagcattttccagctacgtttctagaccttggtcaaattacctaacctctttaccttaagtttctgcatttataaaatgagaatattaatgcttagctcataagatttgaggggaaattatatgaaataataagttggcaaatactaagcactcaaatgttaactattattATTTTTATTTCTCTAAATTCCTGTGACACTTACTGCCAACACCTACACATTAGCCTTACTTATTTTTGAATAATTTCAAGTATGCTGATCTTGTCTCACAATCAGACCAAAAGCCTCTAT-GCAAGGATAATGTCTTAAAGTCCTTTCTATCTCTCCTAAT
  1551. i hg18.chr22 C 0 C 0
  1552. a score=53138.0
  1553. s ponAbe2.chr22 13904411 56 + 46535552 TCCTATATGAGCTTCTGGGCGCAGAGATGAAGAACTCAATA-TCATTGATTGGTTGT
  1554. s calJac1.Contig12391 23696 57 + 45167 TCCTCTGTGAGCTTGTGGGTGCAGAGATGAAGAACTCAATATTCATTGATTGGTTGT
  1555. i calJac1.Contig12391 C 0 C 0
  1556. s rheMac2.chr10 61984015 57 + 94855758 TCCTATATGAGCTTCTGGGCACAGAGATGAAGAACTCAATATTCATTGATTGGTTGT
  1557. i rheMac2.chr10 C 0 C 0
  1558. s panTro2.chr22 16195930 56 + 50165558 TCCTATATGAGCTTCTGGGCGCAGAGATGAAGAACTCAATA-TCATTGATTGGTTGT
  1559. i panTro2.chr22 C 0 C 0
  1560. s hg18.chr22 16173519 56 + 49691432 TCCTATATGAGCTTCTGGGCGCAGAGATGAAGAACTCAATA-TCATTGATTGGTTGT
  1561. i hg18.chr22 C 0 C 0
  1562. a score=317689.0
  1563. s ponAbe2.chr22 13904467 286 + 46535552 TG-GGGAGCAGCAAAACCACTCTGTCTAAGACAGTAGTTAGTGGCTGGTAAACATTTCCACATGTTGTCTCCTCATCAACTGATGGTCTGGGTTTGGGGCTTAGCAGGAAAATGACCACATTACTGAAGCCACTTCCCAAATTACAAGATTTAATGAGCCAAGGAAATTAAATTATTCTCTAAAGTGTACTTTCTGGTTTAGATTATGACTTGATTGCCACATTTGTTACCACCAAATCTTTAGGGAAAATTCCACACAGATACAAATAGACGTGGGCTGAAAACAC
  1564. s hg18.chr22 16173575 286 + 49691432 TG-GGGAGCAGCAAAACCACTCTGTCTAAGACAGTAGTTAGTGGCTGGTAAACATTTCCACATGTTGTCTCCTCATGAACTGATGGTCTAGGTTTGGGGCTTAGCAGGAAAATGACCACATTACTGAAGCCACTTCCCAAATTACAAGATTTAATGAGCCAAGGAAATTAAATTATTCTCTAAAGTGTACTTTCTGGTTTAGATTATGACTTGATTGCCACATTTGTTACCACCAAATCTTTAGGGAAAATTCCACACAGATACAAATAGACGTGGGCTGAAAACAC
  1565. i hg18.chr22 C 0 C 0
  1566. s panTro2.chr22 16195986 286 + 50165558 TG-GGGAGCAGCAGAACCACTCTGTCTAAGACAGTAGTTAGTGGCTGGTAAACATTTCCACATGTTGTCTCCTCGTGAACTGATGGTCTGGGTTTGGGGCTTAGCAGGAAAATGACCACATTACTGAAGCCACTTCCCAAATTACAAGATTTAATGAGCCAAGGAAATTAAATTATTCTCTAAAGTGTACTTTCTGGTTTAGATTATGACTTGATTGCCACATTTGTTACCACCAAATCTTTAGGGAAAATTCCACACAGATACAAATAGACGTGGGCTGAAAACAC
  1567. i panTro2.chr22 C 0 C 0
  1568. s rheMac2.chr10 61984072 287 + 94855758 TGCGGGGGCAGCAAAACCACTCGGTCTAAGACAGTAGTTAGTGGCTGGTAAACATTTCCACATGTTGTCTCCTCATGAACTGATGGTCTGGGTTCAGGGCTTAGCAGGAAAATGACCACATTACTGAAGCCACTTCCCAAATTACAAGATTTAATGAGCCAAGGAAATTAAATTATTCACTAAAGTGTGTTTTCTGGTTTAGATTATGACTTGATTGCCACATTTGTTACCAGCAAATCTTTAGGGAAAATTCCACACAGATACAAATAGACCTGGGCTGAAAGCAC
  1569. i rheMac2.chr10 C 0 C 0
  1570. s calJac1.Contig12391 23753 270 + 45167 T--GGGGGCAGCAGAGCCAC--------------TAGTTAGTGGTCGGTAAACATTTCCACATGTTGCCTCCTCATGAACTG-TGGTCTGGGTTTGGGGCTTAGCAGGAAAATGACCACATTACCGAAGCCACTTCCCGAATTACAAGATTTAATGAGCCAAGGAAATTTAATTATTCTCTAAAGTGTATTTTCTGGTTTCGATTATGACTTGATTGCCACATTTATTACCACCAAATATTTCGGAAAAATTCCACACAGATACAAATAGACCTGGGCTGAAAACAC
  1571. i calJac1.Contig12391 C 0 C 0
  1572. a score=13661.0
  1573. s ponAbe2.chr22 13904753 46 + 46535552 TATCATTT--------Tatttattcattca---------catttattaagaatttgct----------------------------------------------------------------------------------------atatg
  1574. s hg18.chr22 16173861 46 + 49691432 TATCATTT--------Tatttattcattca---------catttattaagaatttgct----------------------------------------------------------------------------------------atatg
  1575. i hg18.chr22 C 0 C 0
  1576. s panTro2.chr22 16196272 46 + 50165558 TATCATTT--------Tatttatgcattca---------catttattaagaatttgct----------------------------------------------------------------------------------------atatg
  1577. i panTro2.chr22 C 0 C 0
  1578. s rheMac2.chr10 61984359 63 + 94855758 TATCATTCATATAGAAAATTCATTTATTAAGAatttaataaattaataagaatttgct----------------------------------------------------------------------------------------atatg
  1579. i rheMac2.chr10 C 0 C 0
  1580. s calJac1.Contig12391 24023 134 + 45167 TATCATTT--------TATTTACTCATTCA---------TATTTATTAAGAATTTCCTCggccaggtgcggtggctcaagcctgtaatcccagcactttggaggtgggcagatcacgaggtcaagagatcgagaccatcctggccaacatg
  1581. i calJac1.Contig12391 C 0 I 202
  1582. a score=152272.0
  1583. s ponAbe2.chr22 13904799 194 + 46535552 aaaggtaagtctgatgcaaagatgt----atacagactatgatcctagcccataaatagtttgctatctatcaggaaagcaaaactgcagaaacaaataattacaatacaaggcagtatgtgacatgtgtaattagaatggcagaatgtctaaatgaactaaaaggagtgagaagtcagaaaaggcatcctgaaaga---------a
  1584. s hg18.chr22 16173907 203 + 49691432 aaaggtaagtctgatgcaaagatgt----acacagactatgatccttgcccataaatagtttgctatctatcaggaaagcaaaactgcagaaacaaataattacaatacaaggcagtatgtgatatgtataattagaatggcagaatgtctaaatgaactaaaaggagtgagaagtcagaaaaggcctcctgaaagaagtatgtaca
  1585. i hg18.chr22 C 0 C 0
  1586. s panTro2.chr22 16196318 203 + 50165558 aaaggtaagtctgatgcaaagatgt----acacagactatgatccttgcccataaatagtttgctatctatcaggaaagcaaaactgcagaaacaaataattacaatacaaggcagtatgtgatatgtataattagaatggcagaatgtctaaatcttttaaaaggagtgagaagtcagaaaaggcctcctgaaaggagtatgtaca
  1587. i panTro2.chr22 C 0 C 0
  1588. s rheMac2.chr10 61984422 202 + 94855758 aaaggtaagtctgatgcaaagatgt----acacagactatgatccttgcccacaaatagtttgctatccatcaggaaagcaaaactgcagaaacaaataattgcaatacaaggcagtatatgatacgtgtaattagaatggcagaatgtctaaatgaactgagaagagtgagaagtcagaaaaggcctcctgaaaaa-gtatgtaca
  1589. i rheMac2.chr10 C 0 C 0
  1590. s calJac1.Contig12391 24359 198 + 45167 aaaGGTAAGTCTCATGCAAGGATGTGATCACACAGACTATGATCCTTGTCCATAAATAGTTTGCTACCTATCAGGAAAGCAAAACCACAGAAACAAATCATTGCAATACAAGGCAGTAGGTGATTTGCATCATGAGAACGGCAGAAAGTCTAAAAGAACTAAGAAGAGTGAGAAGTCGGAAAAGGCCTCCCgacaga-g--------
  1591. i calJac1.Contig12391 I 202 I 239
  1592. a score=147493.0
  1593. s ponAbe2.chr22 13904993 198 + 46535552 tggggctttgaaggatgagcaggattcccatctctagggctgggtgaagagctgtttaaactgaatgatgtatgcaaagacagagctcacagaagtccaggtggttagaacacgaggtgtgcagaggggt-gcaggaggaggagacagttgaaaaccagagccaggaaaggCTTCAATGCTAAGTTATGAGCTTGAATT
  1594. s hg18.chr22 16174110 198 + 49691432 cggggctttgaaggatgagcaggattctcgtctctagagctgggtgaagagctgtttaaactggatgatatatgcaaagacagagCTCACAGAAGTCCAGGTGGTTAGAACACGAGGTGTGCAGAGGGGT-GCAGGAGGAGGAGACAGTTGAAAACCAGAGCCAGGAAAGCCTTCGACGCTAAGTTATGAGCTTGAATT
  1595. i hg18.chr22 C 0 C 0
  1596. s panTro2.chr22 16196521 198 + 50165558 cggggctttgaaggatgagcaggattcccgtctctagagctgggtgaagagctgtttaaactggatgatatatgcaaagacagagCTCACAGAAGTCCAGGTGGTTAGAACACGAGGTGTGCAGAGGGGT-GCAGGAGGAGGAGACAGTTGAAAACCAGAGCCAGGAAAGCCTTCAATGCTAAGTTATGAGCTTGAATT
  1597. i panTro2.chr22 C 0 C 0
  1598. s rheMac2.chr10 61984624 196 + 94855758 ccgggctttgaagggtgagcaggaTTCCCATCACTAGAGCTGGGTAAAGAGCTGTTTAAACTGGATGATGTATGCAAAGACAGAGCTCGCAGAAGTCCACGTGATTAGAGCATGAAGTGTGCAGAGGGGT-GCAGGAGGAGGAGACAGTTGAAAACCAGAGCCAGGAAAGCCTTCAATGCT--GTTATGAGCTTGAATT
  1599. i rheMac2.chr10 C 0 C 0
  1600. s calJac1.Contig12391 24796 199 + 45167 CGGGGCTGTGAAGGATGAGCAGAATCTCCATGGCTAGAGCTGGGTAAAGAGCAGTTTAAGCTGAGTGGTGCATGCAAAGACAGAGCTCGCGGAAGCCCAGGTGGTTAGAACACGAGGTGGGCAGGGGGGCAGGGGGAGGAGGAGACAGTTGGAAACCAGAGCCAGGAAAGCCTTAAATGCTGAATTGTGAGCTTGCATT
  1601. i calJac1.Contig12391 I 239 I 186
  1602. a score=133022.0
  1603. s ponAbe2.chr22 13905191 201 + 46535552 TTGTATGT---------------------------------------------------------------------------------------------------TAGA--------------------CAAGTGGGAGATCTTAAGGTTTCAGAGTAAAAGAACGACATGGCCTTTACTGTGTGATTTGTGATTAGTCAGTGGTTAAGTGTGGGTAGGAGACGCTAGAAGTCATGGGAATAGCCCAGGCGTGAAGTAAGGAGGCTGAAATTAGGCAGTAGCATTAGAAATGGAAAGGGTATAGATAAGCAAAGGATT
  1604. s hg18.chr22 16174308 193 + 49691432 TTGTATGT---------------------------------------------------------------------------------------------------TAGA--------------------CAAGTGGGGGATCTTAAGGTTTCAGAGTAAAAGAACGATGTGGCCTTTACTGTGTGATTTGTGATTAGTCGGTGGTTAAGTGTGGGTAGGAGACGCTAGAAGTCATGGGAATAGCCCAGCCGTGAAGTAAGGAGGCTGAAATTAGGCAGTAGCGTTAGAAATGGAAAGGGTATAGGTAAGC--------
  1605. i hg18.chr22 C 0 C 0
  1606. s panTro2.chr22 16196719 193 + 50165558 TTGTATGT---------------------------------------------------------------------------------------------------TAGA--------------------CAAGTGGGAGATCTTAAGGTTTCAGAGTAAAAGAACTATGTGGCCTTTACTGTGTGCTTTGTGATTAGTCGGTGGTTAAGTGTGGGTAGGAGACGCTAGAAGTCATGGGAATAGCCCAGGCGTGAAGTAAGGAGGCTGAAATTAGGCAGTAGCGTTAGAAATGGAAAGGGTATAGGTAAGC--------
  1607. i panTro2.chr22 C 0 C 0
  1608. s rheMac2.chr10 61984820 200 + 94855758 TTGTATG----------------------------------------------------------------------------------------------------TAGA--------------------CAAGTGGGAGATCTTAAGGTTTCAGAGTAAAAAAACGACGTGGCCTTTACTGTGTGATTTGTGATTAGTCGGTGGTGAAGTGTGGGTAGGAGATGCTGGAAGTCATGGGAATAGCCCAGGCATGAAGTAAGGAGGCTGAAATTAGGCAGTAGCGTTAGAAATGGAAAGAGTATAGATAAGCAAAGGATC
  1609. i rheMac2.chr10 C 0 C 0
  1610. s calJac1.Contig12391 25181 320 + 45167 ttgtgtgtatttttagtagagacggggtttcaccatgttgtccaggatggtctcgatctcttgacctcgtgatccacccgcctctgcctcccaaggtgctgggattatagacgtgagccaccgcgcccggccAAGTAGGAGATCTTAAGGTTTCCGAGTAGAAGAACGACACGGCCTTTACTGTGCAATTTGTGATTAGTCGGTGGTGAAGTGTGGGTAGGAGACGCTACAGGTCACGAGAACAGCCCAGGCGTGAAGTATGGGGGCTGAAATTAGGCAGTAGTGTTAGAGACAGAATGGGTATAAATAAGCAAAGGATT
  1611. i calJac1.Contig12391 I 186 I 375
  1612. a score=29708.0
  1613. s ponAbe2.chr22 13905463 39 + 46535552 TGCGTTGGGATGTGGCTGTTTTCATTTGATGCTGTCAGG
  1614. s hg18.chr22 16174570 39 + 49691432 TGCGTTGGGATGTAGCTGTGTTGATTTGGTGCTGTCAGG
  1615. i hg18.chr22 C 0 C 0
  1616. s panTro2.chr22 16196981 39 + 50165558 TGCGTTGGGATGTAGCTGTGTTGATTTGGTGCTGTCAGG
  1617. i panTro2.chr22 C 0 C 0
  1618. s rheMac2.chr10 61985091 39 + 94855758 CGCGCTGGGATGTAGCCGTGTTGATTTGGTGCTGTCAGG
  1619. i rheMac2.chr10 C 0 C 0
  1620. s calJac1.Contig12391 25876 39 + 45167 TGTACTGGGATGTGGCTGTGTTGATTTGGCGCTTTCGGG
  1621. i calJac1.Contig12391 I 375 N 0
  1622. a score=314190.0
  1623. s ponAbe2.chr22 13905656 434 + 46535552 ggccaggcgcagtggctcacgcctgtaatcctagcactttgggaggccgaggcgggcagatcacgaggtcaggagttcaagaccagcctgactaacatgatgaaaccctgtctctactaaaaatacaaaaaattagcctggcgtagtggtgcgcgcctgtaatcccagctactcgggaggctgaagcaggagaatcactcgaacccaggttgtgggaggttgcagtgagccgagatcgcgccattgcactccagcttgggcaacaagagcgaaactccgtctcaaaa----------aaaaggaaagaaaa------------------------------------gaaaaCACCTA--------------GAGGAAAGAAGATAAGAGGC------------------------AAATCTGGCGTCATAGTCACGGAACTGGAAAAGGAGCCAGAGAGAGAATTCAAAGACAAAATaattattactaatgttggtgagtgtttatgatcccagcac
  1624. s calJac1.Contig12391 25501 509 + 45167 ggccgggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaagagatcgagaccatcctgatcaacatggtgaaatcccgtctctactaaaaatacaaaaaattagctgggcatggtggtgcgtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcctgaacccaggaggc-ggaggttgtggtgagccgagatcgcgccattgcactccagcctgggtaacaagagcgaaactccgtctcaaaa---aaaaaaaaaaaGCAAAGGATTATAAAAGATTTGTTAACTATTTGGACATGGAAGCCTGAGGACGCATCAAACGTGCTTTCCTGAGGTGATGTACTGGGATGTGGCTGTGTTGATTTGGCGCTTTCGGGACCTGGGGTCATAG----GGAACTGGAAAAGGAGCCAGACAGAGAATTCAAA-ACGAAACCATGACTACTAACGTTGGCGAGTATTTCTGATCAaggcgc
  1625. i calJac1.Contig12391 N 0 C 0
  1626. s rheMac2.chr10 61985283 458 + 94855758 ggccaggcacagtggctcgcgcctgtaatcctagcactttgggaggccaaggcgggcagatcacaaggtcaggagtttgagaccagcctggccaacatgatgaaaccctgtctctactaaaaatacaaaaaattagctgggtgtggtggtgggcacctgtaatcccagctacttgggagactgaagcaggagaatcacttgaatccaggttgctgggggttgcagtgagccaagatcacgccattgcactccagtctgggcaacaagagcgaaactccgtctccaaaaaaaaaaaaaaaaagaaagaaagaaagaaaga----------------------aagaatgaaaACACATA--------------GAGAAAAGAAGGTAAGAGGC------------------------AAATCTGGGGTCATAGTCAGGGAACTGAAAGAGGAGCCAAAGAGAGAATTCAAAGACAAAATaattatgactaatgttggtgactgtttatgatcccggcac
  1627. i rheMac2.chr10 C 0 C 0
  1628. s panTro2.chr22 16197174 439 + 50165558 ggccaggcgcagtggctcacgcctgtaatcctagcactttgggaggccgaggcgggcagatcacgaggtcaggagttcaagaccagcctgaccaacatgatgaaaccctgtctctaccaaaaatgcaaaaaattagcctggcgtagtggtgtgcgcctgtaatcccagctactcaggaggctgaagcaggagaatcacttgaacccaggttgctggaggttgcagtgagctgagatcgcgccattgcactccagcttgggcaacaagagtgaaactctgtctcaaaa-----aaaagaaaagaaaagaaga------------------------------------gaaaaCACCTA--------------GAGGGAAGAAGATAAGAGGC------------------------AAATCTGGGGTCATAGTCAGGGAACTGGAAAACGAGCCAGAGAGAGAATTCAAAGACAAaataattattacttatgttggtgagtgtttatgaccccagcac
  1629. i panTro2.chr22 C 0 C 0
  1630. s hg18.chr22 16174763 444 + 49691432 ggccaggtgcagtggctcacgcctgtaatcctagcactttgggaggccgaggcgggcagatcacgacgtcgggagttcaagaccagcctgaccaacatgatgaaaccctgtctctaccaaaaatgcaaaaaattagcctggcgtagtggtgtgcgcctgtaatcccagctactcaggaggctgaagcaggagaatcacttgaacccaggttgctggaggttgcagtgagctgagatcgcaccatcgcactccagcttgggcagcaagagtgaaactctgtctcaaaaaaaagaaaagaaaagaaaagaaaa------------------------------------gaaaaCACCTA--------------GAGGAAAGAAGATAAGAGGC------------------------AAATCTGGGGTCATAGTCAGGGAACTGGAAAACGAGCCAGAGAGAGAATTCAAAGACAAaataattattacttatgttggtgagtgtttatgaccccagcac
  1631. i hg18.chr22 C 0 C 0
  1632. a score=143419.0
  1633. s ponAbe2.chr22 13906090 178 + 46535552 tatcctcctaagtgacgtccatgcattcatgcatttgatcctcaccacataatgaggaaagtaccattacctgaagaaagtgagagccagagagcttaagcctcttgcccaagctcgcacggcaaggctcagagcccggagtcctacacaggcagcatgagtccggCCCA-TCTGCCTC
  1634. s hg18.chr22 16175207 179 + 49691432 tatcctcctaagtgctgtccatgcattcatgcacttgatcctcaccacataatgaggaaagtaccattacctgaagaaagtgagagccagagagcttaagcctcttgcccaagctcgcgcggcaaggctcagagcccggagtcctacacaggcagcatgagtccagCCCATTCTGCCTC
  1635. i hg18.chr22 C 0 C 0
  1636. s panTro2.chr22 16197613 179 + 50165558 tatcctcctaagtgctgtccatgcattcatgcatttgatcctcaccacataatgaggaaagtaccattacctgaagaaagtgagagccagagaacttaagcctcttgcccaagctcgcgcggcaaggctcagagcccggagtcctacacaggcagcatgagtccagCCCATTCTGCCTC
  1637. i panTro2.chr22 C 0 C 0
  1638. s rheMac2.chr10 61985741 179 + 94855758 tatcctcctaagtgctgtccatgcattcatgtatttgatcctcaccatgtaatgaaaaaagtaccatgacccgaagaaagtgagagccagagagcttaagcctcttgcccaagctcgcgcagcaaggctcagagcctggagtcctacacaggcagcatgaatccggCCCATTCTGCCTC
  1639. i rheMac2.chr10 C 0 C 0
  1640. s calJac1.Contig12391 26010 170 + 45167 tatcctcc-aaatgctgtccgtgcattggtgcgtc--accctcaccacgtaatgaggcaggtaccattacctgaggaaagtgagagccagaaagcttaagcatcttgcccaagctcaggaggcaaggctcagagcccagagtcgtaca----cagtgtgaatctggcCAA-TATGCCT-
  1641. i calJac1.Contig12391 C 0 I 1
  1642. a score=42027.0
  1643. s ponAbe2.chr22 13906268 53 + 46535552 TAAAGTCAGGGTAGAGGGCTGGGCCACTGAAATCAAGGGATAAAAAAGTTCGG
  1644. s hg18.chr22 16175386 53 + 49691432 TAAAGTCAGGGTAGAGGGCTGAGCCACTGAAATCAAGGGATAAAAAAGTTCAG
  1645. i hg18.chr22 C 0 C 0
  1646. s panTro2.chr22 16197792 53 + 50165558 TAAAGTCAGGGTAGAGGGCTGGGCCACTGAAATCAAGGGATAAAAAAGTTCAG
  1647. i panTro2.chr22 C 0 C 0
  1648. s rheMac2.chr10 61985920 46 + 94855758 TAAAGTCAGGGTAAAGGGCTG-------GAAATCAAGGGATAAAAAAGTTCAG
  1649. i rheMac2.chr10 C 0 C 0
  1650. s calJac1.Contig12391 26181 53 + 45167 TAAGGTCAGGGTAGAGGGCTGGGGCACCAAAATCAAGGGATAAGAAAGTTCAG