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/test-data/5.maf

https://bitbucket.org/cistrome/cistrome-harvard/
Unknown | 1513 lines | 1330 code | 183 blank | 0 comment | 0 complexity | c62b6d70c9496c0428db14d7d017f60d MD5 | raw file
  1. ##maf version=1
  2. a score=64549.0
  3. s hg17.chr1 147962192 9 + 245522847 TCATTTAAT
  4. s panTro1.chr1 129698808 9 + 229575298 TCATTTAAT
  5. s mm5.chr3 65458475 7 - 160575607 --ATTTGAT
  6. s rn3.chr2 68236843 7 - 258222147 --ATTTGAT
  7. s canFam1.chr17 62929731 9 + 66886099 TTATTTGAT
  8. a score=37247.0
  9. s hg17.chr1 147962201 43 + 245522847 GACAATTTTCTGGCGCAAGGCTCGGGGCCCAGAGCCAGGGAGG
  10. s panTro1.chr1 129698817 43 + 229575298 GACAATTTTCTGGCGCAAGGCTCGGGGCCCAGAGCCAGGGAGG
  11. s mm5.chr3 65458482 43 - 160575607 GACAATCTTCTGACGCAAGGCTCGAGGCCCAGAGCCAGGTAGT
  12. s rn3.chr2 68236850 43 - 258222147 GACAATCTTCTGACGCAAGGCTCGGGGCCCAGCGCCAGGGAGT
  13. s canFam1.chr17 62929740 43 + 66886099 GACAATTTTCTGGCGCAAGGCTCGGGGCCCAGAACCAGGGAGG
  14. s danRer1.chr10 19400803 43 + 25436222 GGCGCTCTGCTTGAGCACAGCTTTGGGTCGTGCGCTCTTCAAA
  15. a score=1000.0
  16. s hg17.chr1 147962244 1 + 245522847 G
  17. s panTro1.chr1 129698860 1 + 229575298 G
  18. s mm5.chr3 65458525 1 - 160575607 G
  19. s rn3.chr2 68236893 1 - 258222147 G
  20. s canFam1.chr17 62929783 1 + 66886099 G
  21. a score=0.0
  22. s hg17.chr1 147962244 3 + 245522847 GGC
  23. a score=3000.0
  24. s hg17.chr1 147962245 2 + 245522847 GC
  25. s panTro1.chr1 129698861 2 + 229575298 GC
  26. s mm5.chr3 65458526 2 - 160575607 GC
  27. s rn3.chr2 68236894 2 - 258222147 GC
  28. s canFam1.chr17 62929784 2 + 66886099 GC
  29. s fr1.chrUn 290886762 2 + 349519338 GC
  30. a score=18092.0
  31. s hg17.chr1 147962247 26 + 245522847 TCAGGAGGTGGCGGGCCGGGGCC-----CAG
  32. s panTro1.chr1 129698863 26 + 229575298 TCAGGAGGTGGCGGGCCAGGGCC-----CAG
  33. s mm5.chr3 65458528 26 - 160575607 TCGGGGGGTGGGGGCCCGGGGCC-----CAG
  34. s rn3.chr2 68236896 26 - 258222147 TCGGGGGGTGGGGGCCCGGGGCC-----CAG
  35. s canFam1.chr17 62929786 26 + 66886099 TCGGGAGGTGGTGGGCCAGGGCC-----CAG
  36. s fr1.chrUn 290886764 26 + 349519338 TGATGAGGAATCGAGTCCTGTGG-----CAG
  37. s danRer1.chr10 19400846 31 + 25436222 TTAGCAGGTGAATCGCTAGCGTCGGTGTTAG
  38. a score=219213.0
  39. s hg17.chr1 147962273 178 + 245522847 GGCTGAGGCAGTGGGCGGCAGTCCATGGGCAGTAATGTACTTCTTGTAAGCCTCACGAATGATCTTGAAGGCTCGAGCAGTGGCATAGGGTATGTCTGTAACAGGGTCCCGGTATAGGGCTGGACGATGGGTCACTGGACAGACCTCACGAACAGGGACTTTTGGG---GGCCGCCCTTGG
  40. s panTro1.chr1 129698889 178 + 229575298 GGCTGAGGCAGTGGGCGGCAGTCCATGGGCAGTAATGTACTTCTTGTAAGCCTCACGAATGATCTTGAAGGCTCGAGCAGTGGCATAGGGTATGTCTGTAACAGGGTCCCGGTATAGGGCTGGACGATGGGTCACTGGACAAACCTCACGAACAGGGACTTTTGGG---GGCCGCCCTTGG
  41. s mm5.chr3 65458554 178 - 160575607 CGCCGAGGCGGTGGGTGGAAGTCCGTGGGCAGTGATGTACTTCTTGTACGCCTCACGGATGATCTTGAAGGCTCTAGCAGTGGCATAGGGTATGTCTGTAACAGGGTCCCGGTACAAAGCTGGACGGTGGGTCACTGGGCAGACCTCCCGCACCGGGACCTTCGGG---GGTCGCCCCTGG
  42. s rn3.chr2 68236922 178 - 258222147 CGCTGAGGCAGTGGGTGGTAGTCCGTGGGCAGTGATGTACTTCTTGTACGCCTCACGGATGATCTTGAAGGCTCTAGCAGTGGCATAGGGTATGTCTGTAACAGGGTCCCGGTACAAAGCTGGACGGTGGGTCACTGGGCAGACCTCCCGAACAGGGACCTTTGGT---GGTCGCCCTTGG
  43. s canFam1.chr17 62929812 178 + 66886099 GGCTGAGGCAGTGGGCGGCAGTCCGTGGGCAGTGATGTACTTCTTGTAGGCCTCACGGATGATCTTGAAGGCTCGAGCAGTGGCGTAGGGGATGTCTGTGACAGGGTCCCGGTACAGGGCTGGGCGATGGGTCACGGGGCAGACCTCCCGAACAGGGACCTTTGGG---GGCCGGCCTTGG
  44. s fr1.chrUn 290886790 179 + 349519338 CTCCAGG--AGTGTTTGGGAAGCCGTGTGCAGCCACGTATTTACGGTAAGCTTCTCGGATGATGCGGAAGGCTCGTGCGTTAGCATAAGGTATGTCTGTGACCGGATCTCTGTACAGTGCGATCTTATGCGTGACGGGACAAATCTCCTGGACGGGCAGCTGAGGGCTCGGCTGCCCCTTG
  45. s danRer1.chrUn 128306408 178 - 367113659 GGATGGGCCAGTGCAGGGCAGGCCATGAGCAGCCACATACTTCTTATAGGCCTCCCGAATTATCCTGAAGGCCTGTACATTAGCGTAAGGAATGTCAGTGATGGGGTCCCGGTAGAGCGCAGGCTTATGGGTAACAGGACAGACCTCCTGGACAGGTACTCGAGGA---GCAGGCGACTGG
  46. a score=84843.0
  47. s hg17.chr1 147962451 56 + 245522847 GGGAACCATTCCTCGAAAGTTGCATCATCACTAAAAGTGATGAAGGTACGTGAGCA
  48. s panTro1.chr1 129699067 56 + 229575298 GGGAACCATTCCTCGAAAGTTGCATCATCACTAAAAGTGATGAAGGTACGTGAGCA
  49. s mm5.chr3 65458732 56 - 160575607 GGGAACCACTCTTCAAACGTTGCATCATCACTGAACGTGATGAAGGTGCGAGAGCA
  50. s rn3.chr2 68237100 56 - 258222147 GGGAACCATTCTTCAAACGTGGCATCATCACTGAATGTGATGAAGGTACGTGAGCA
  51. s canFam1.chr17 62929990 56 + 66886099 GGAAACCATTCCTCAAATGTTGCATCATCACTAAAAGTGATGAAAGTACGCGAGCA
  52. s galGal2.chrUn 96971568 56 + 165033910 GGGGAAGAACGTTCGAAGGTTTCGTCGTCGCTGAAGGCATTGAAGGTGCGCGAGCA
  53. s fr1.chrUn 290886972 56 + 349519338 GAAAAGGCCACCTTAAAAGCTTCGTCGTCGCTGAACGTGATGTAAGTACGGGAGCA
  54. s danRer1.chrUn 128306586 56 - 367113659 GGAAAGACACGCTGGAAGGACTCATCATCACTGAATGTGATGTAGGTGCGAGAGCA
  55. a score=25539.0
  56. s hg17.chr1 147962507 63 + 245522847 GCG-----AGCAGGGGGGTTGA------------CGGGT------CCAGTCCCAGCATG--AGGAGTCAATGCAGACACCGAGGGAG-C
  57. s panTro1.chr1 129699123 63 + 229575298 GCG-----AGCAGGGGGGTTGA------------CGGGT------CCAGTCCCAGCATG--AGGAGTCAATGCAGAAGGGGAGGGAG-C
  58. s mm5.chr3 65458788 75 - 160575607 GTG-----AGCAGGAGGGGTGGCAGCGGCAGCTCCAGTC------CCGGTCCCAGCATG--TGGAGCCAGTGCAGAGGCTGTAGGAG-C
  59. s rn3.chr2 68237156 63 - 258222147 GTG-----AGGAGGAGGGACGG------------CAGGT------CCAGTGCCAGCATG--TGCAGTCAGTGCAGAGGACGTAGGAG-C
  60. s canFam1.chr17 62930046 63 + 66886099 GCG-----AGGTGGAGGGACAA------------CGGGT------CCAGTGCCGGCATG--GGGAGTCAGTGCAGAAGCTGTGGGAG-T
  61. s galGal2.chrUn 96971633 66 + 165033910 GCA-----GGCCGGGGCTGCGG------------CCGGG------GCGGCGTCTGCCTGCTGCGGGTCCTGGTCCAACCTGCAAGAGCC
  62. s danRer1.chrUn 128306646 74 - 367113659 GTGTTTACAGCAGCTGTGTTTG------------TGAATGGGACACCGGGTGCTGCGGA--AAGCGTTGATTCGGACTGGGAAAGAG-C
  63. a score=14242.0
  64. s hg17.chr1 147962570 10 + 245522847 AGGATCAAGT
  65. s panTro1.chr1 129699186 10 + 229575298 AGGATCAAGT
  66. s mm5.chr3 65458863 10 - 160575607 AGGATCAAGG
  67. s rn3.chr2 68237219 10 - 258222147 AGGATCAAGT
  68. s canFam1.chr17 62930109 10 + 66886099 AGGATCCAGC
  69. s galGal2.chrUn 96971699 10 + 165033910 GGGGTCAGCT
  70. a score=550634.0
  71. s hg17.chr1 147984545 85 + 245522847 ATGGCGTCGGCCTCCTCCGGGCCGTCGTCTTCGGTCGGTTTTTCATCCTTTGATCCCGCGGTCCCTTCCTGTACCTTGTCCTCAG
  72. s panTro1.chr1 129723125 85 + 229575298 ATGGCGTCGGCCTCCTCCGGGCCGTCGTCTTCGGTCGGTTTTTCATCCTTTGATCCCGCGGTCCCTTCCTGTACCTCGTCCTCAG
  73. s mm5.chr3 65474800 76 - 160575607 ATGGCGTCCGCCTCCTCAGGGCCAGCG---GCGGCCGGGTTTTCATCCCTTGATGCCGGGGCCCCTGCTGGTA------CCGCAG
  74. s rn3.chr2 68255714 76 - 258222147 ATGGCGTCCGCCTCCTCAGGGCCAGCG---GCGGCGGGGTTTTCACCCCTTGATTCCGGGGTCCCTGCCGGTA------CCGCAG
  75. s canFam1.chr17 62947719 82 + 66886099 ATGGCGTCGGCCTCCTCTGGGCCGTCG---GCGGCTGGGGTTTCATCCTTTGATCCCGGGGTCCCTTCCTGTGCTTCGGCTTCAG
  76. a score=365854.0
  77. s hg17.chr1 148078400 182 + 245522847 TCACATGATGCCGTTGGTGAGGTACTGGAAGCCGTCATAGAGTTTGGTGGTGATAGACCGCATACTGCCATCCACCATCTGCTCCACCAGCAGCTGCAGCTGCTCCTCAGTCATGCTCAT-GTGGAACCTCTCTTTGAGGTTTCGAATGGTGCTGGAGCCATGGAAGCAAGGAAGCTGAGA-AC
  78. s panTro1.chr1 129830209 182 + 229575298 TCACATGATGCCGTTGGTGAGGTACTGGAAGCCGTCATAGAGTTTGGTGGTGATAGACCGCATACTGCCATCCACCATCTGCTCCACCAGCAGCTGCAGCTGCTCCTCAGTCATGCTCAT-GTGGAACCTCTCTTTGAGGTTTCGAATGGTGCTGGAGCCATGGAAGCAAGGAAGCTGAGA-AC
  79. s mm5.chr3 65575311 182 - 160575607 TCACATGATGCCATTGGTGAGGTACTGGAAGCCATCGTAGAGTTTGGTGGTGATGGACCTCATGCTGCCGTCCACCATCTGCTCCACCAGCAGCTGCAGCTGCTCCTCAGTCATGCTCAT-GTGGAACCTCTCTTTGAGGTTGCGAATGGTGCTGGAGCCATGGAAGCAAGGAAGCTGAGA-AC
  80. s rn3.chr2 68356506 182 - 258222147 TCACATGATGCCATTGGTGAGGTACTGGAAGCCATCGTAGAGTTTGGTGGTGATGGACCTCATGCTGCCGTCCACCATCTGCTCCACCAGCAGCTGCAGCTGCTCCTCAGTCATGCTCAT-GTGGAACCTCTCTTTGAGGTTGCGAATGGTGCTGGAGCCATGGAAGCAAGGAAGCTGAGA-AC
  81. s canFam1.chr17 63050241 182 + 66886099 TCACATGATGCCATTGGTGAGGTACTGGAAGCCGTCATAGAGTTTGGTGGTGATAGACCGCATGCTGCCATCTACCATCTGCTCCACCAGCAGCTGGAGCTGCTCCTCAGTCATGCTCAT-GTGGAACCGCTCTTTGAGGTTGCGGATGGTGCTGGAGCCATGGAAGCAAGGAAGCTGAGA-AC
  82. s galGal2.chrUn 96994100 182 + 165033910 TCACATGATGCCGTTGGTGAGGTACTGGAAGCCGTCGTACAGTTTGGTGGTGATGGAGCGCATGCTGCCGTCCACCATCTGCTCCACCAGCAGCTGCAGCTGCTCCTCCGTCATGTTCAT-GTGGAAGCGCTCCTTCAGGTTGCGGATGGTGCTGGAGCCGTGGAAGCAGGGGAGCTGCGA-GC
  83. s fr1.chrUn 196934251 182 - 349519338 TCACATGATTCCATTTGTCAGGTACTGGAAGCCGTCGTAGAGTTTGGTCGTCAGCGACCTCATCGAGCCCTCGACCAGCTGATCGATCAGCAGCTGGAGCTGCTCCTCTGTCAGACTCAT-GTGGAAACGTTCCTTCAAACCCCGCATGGTGCTCGACCCGTGGAAACACGGCAGCTGGGA-CC
  84. s danRer1.chrNA 19436521 184 - 390413307 TCACATGATACCGTTGGTCAGATACTGGAAGCCGTCGTACAGTTTGGTAGTGATGGAGCGCATGGAGCCGTCCACCATCTGCTCCACCAGCACCTGCAGGTGCTCCTCCGATAAGTACATGGGGGAATAACTCCTTCAGGTTGCGGATAGTGCTGGAGCCATGGAAGCGAGGGAGCTGTGACAC
  85. a score=172494.0
  86. s hg17.chr1 148185136 140 + 245522847 ATGGAAGCGTTTTTGGGGTCGCGGTCCGGACTTTGGGCGGGGGGTCCGGCCCCAGGACAGTTTTACCGCATTCCGTCCACTCCCGATTCCTTCATGGATCCGGCGTCTGCACTTTACAGAGGTCCAATCACGCGGACCCA
  87. s panTro1.chr1 129935611 140 + 229575298 ATGGAGGCGTTTTTGGGGTCGCGGTCCGGACTTTGGGCGGGGTGTCCGGCCCCAGGACAGTTTTACCGCATTCCGTCCACTCCCGATTCCTTCATGGATCCGGCGTCTGCACTTTACAGAGGTCCAATCACGCGGACCCA
  88. s mm5.chr3 65694347 140 - 160575607 ATGGAAGCGTTTTGGGAGTCACGGGCTGGCCACTGGGCCGGGGGTCCGGCTCCAGGGCAGTTTTACCGCATCCCGGCCACCCCCAGCGGCCTCATGGACCCGGCGTCGGCGCCCTGCGAGGGTCCCATCACTCGGACCCA
  89. s rn3.chr2 68486927 140 - 258222147 ATGGAAGCGTTTTGGGAGTCACGGACTGGCCACTGGGCCGGGGGTCCGGCTCCGGGGCAGTTTTACCGCGTCCCGTCCACCCCCAGCTGCCTCATGGATCCGATGTCTGCGCCCTGCGAGGGTCCCATCACTCGGACCCA
  90. s canFam1.chr17 63150913 140 + 66886099 ATGGAAGCCTTTCTGGAGTCGCGGTCCAGAGTTTGGGCCGGTGGTCCCGCCCCGGGGCAGTTTTACCACATCCCGCCTAGTTCCGTCGCCTCCGTGGAGCCGGCGTTTTCTCCTTACGGGGGTCCGGTTACGCGCACGCA
  91. a score=69091.0
  92. s hg17.chr10 55251623 116 + 135413628 TTACAGTGAAGTAGATTGACTGTGAGATTGTTTTTCAGTTCCCTCGACAATATTGTTCAAACTC--------CC------CTTGTTTTGTTCAGATGTGA----TTTCCATATTTGTTA------CTTCTGAAG-GGCACA----
  93. s panTro1.chr8 56162651 116 + 138322177 TTACAGTGAAGTAGATTGACTGTGAGATTGTTTTTCAGTTCCCTCGACAATATTGTTCAAATTC--------TC------CTTGTTTTGTGCAAATGTGA----TTTCCATATTTGTTA------CGTCCGAAG-GGCACA----
  94. s mm5.chr10 56176594 116 - 130633972 TTACAAAGATGTTGATTGACTGTGAGGTTGCACGTCAATTCCCTCAACAACTCTAACCAACGTT--------TC------CTGGCTCTGGTCATGTGTGA----TTTTCATGCCTGTTT------TCTCTGCAG-GGCAAA----
  95. s rn3.chr20 14526840 116 + 55296979 TTACAAGGACGTTGACTGACTGTGAGTTTGCACGTCAATCCCTTCAACAACTCTAACCAACGTT--------TC------CTGGCTCTGGTCACATGTGA----TTTTCATGTTTGTTT------TCTCTGCAG-GACAAA----
  96. s canFam1.chr26 4431080 116 - 41009621 TTACAGTGAAGTAGATTGACTGTGAGATTGGTTCTCCGTTTCCTCGGCAAAACTGTGCAAATTC--------CC------CTGGGGTTGTTGAGACGTCA----CGTCCACATTTTCTC------TCTCTGGAG-GGCAAC----
  97. s galGal2.chr6 27913521 123 - 33893787 TTACAGTGCTGTCGACTGAGATGGAAAGCGTTTCTCAAGCTCCTCCACAACACAGCTCAAGTTG--------CCGTTCTGCTGGTTGTGCTCAGCTGCAG----CCTCGGGAGTTGGCA------GCTCTGGCGTTGCAAC----
  98. s danRer1.chr12 3415306 139 + 24175710 TCACAGAACAGTGGACTGAGATGGAAAGCGTTTCTCCAGCTCCTCCACTACTGAGTTCATGCTTGGATTGGGCT------CTGATGGTGGTCCTTCTTGAGCAGGCTCCGCCTCTGTTACACCAGCCTCTGGTTCGACAGACACT
  99. a score=137977.0
  100. s hg17.chr10 55251739 126 + 135413628 TAGTTTGAAGTTCTGAAACATTTGTGCGTAGA---TAGTTTTTTTCTATTTGACTGTACATGTTAG-CTACTGATTTTTCAAGTTCTGCTAAGTTTTTAACGTGTCTGAGGATGCCTTTTGGTTCTCTCT
  101. s panTro1.chr8 56162767 127 + 138322177 TAGTTTGAAGTTCTGAAACATTTGTGCGTAGA---TAGTTTTTTTCTATTTGACTGTACATGTTAGACTACTGATTTTTCAAGTTCTGCTAAGTTTTTAACATGTCTGAGGATGCCTTTTGGTTCTCTCT
  102. s mm5.chr10 56176710 126 - 130633972 ACGTGTGTAGTTTTGAGGGATCTGCAGGTGGG---CAGTTTTTTTCTATGTGACTGTACATGTTAG-ACACTGATTTCTCGAGCTCTGCCAAGTTTTTCACATGTCTGAGGATCCCTTTTGGATGTCTGT
  103. s rn3.chr20 14526956 126 + 55296979 AGGGGTGGAGTTTTGAGAGCTCTGTGGGTGGA---CAGTTTTTCTCGATGTGACTGTACATGTTAG-ACACCGATTTCTCGAGCTCTGCCAGGTTTTTCACGTGCCTGAGGATCCCTTTGGGATGTCTGT
  104. s canFam1.chr26 4431196 126 - 41009621 TTGTCTCTAGTTTCCAGCTGTGTGTTGCTGGA---AAGTTTTTTTCTATTTGACTGTACATGTTAG-CAACTGACTTTTCAAGGTCCGCTAAGTTTTTTATATGCTTGAGGATGCCCTTTGGTTGTTTCT
  105. s galGal2.chr6 27913644 128 - 33893787 TGGTTTG-AGCTTAGAGATGTGCTTGGGCAGAACGTGGTTTTTGTCTATTTGGCTGTACATATTGG-CCACGGACTTTTCAATCGCTGCTAAATTCTGAATGTTTTTAAGAATACCTTTCAGCTCCCTAC
  106. s fr1.chrUn 9089644 117 + 349519338 TAGGATGAAGCTTGGGCACCTT---------G---TAGTTTTTGTCTACTTGGCTGTACATGTTGG-CAATGGACCTCTCTATGTCAGCGAGATTCTGGATGTTTTTCAGGATCCCTTTGAGCTCCTTTT
  107. s danRer1.chr12 3415445 124 + 24175710 -----TGCGGTTTAGGGTTGATCACTAGTGGGCGCTGCTTTTTATCTATTTGACTGTACATATTGG-CAACAGATTTCTCGATGTCTGCTATGTTCTGGAGGTTCTTAAGGATCCCCTTGAGTTCCCTCT
  108. a score=13160.0
  109. s hg17.chr10 55251865 17 + 135413628 GAGGGTCTGTTTTACAC
  110. s panTro1.chr8 56162894 17 + 138322177 GAGGGTCTGTTTTACAC
  111. s mm5.chr10 56176836 17 - 130633972 GGGGTTCTGCCCCCCAC
  112. s rn3.chr20 14527082 17 + 55296979 GGGGTTCCGCCCCACAC
  113. s canFam1.chr26 4431322 17 - 41009621 GGGGGTCTGTGTCACAC
  114. s galGal2.chr6 27913772 17 - 33893787 GGGGAGGTGGCTCTGGC
  115. s fr1.chrUn 137770001 14 + 349519338 GAGGA---GTTTCGGGC
  116. s danRer1.chr12 3415572 17 + 24175710 GAGGCTCTGGCTCAGAC
  117. a score=14118.0
  118. s hg17.chr10 55251882 71 + 135413628 ACTG---TCGTTGTTGATAGCTGTGTCATAGAGGACTTAATTTTCTCGGCAGGCATCAAGTTGGTCGT-GCATTT
  119. s panTro1.chr8 56162911 71 + 138322177 ACTG---TCGTTGTTGATAGCTGTGTCATAGAGGACTTAATTTTCTCGGCAGGCATCATGTTGGTCGT-GCATTC
  120. s mm5.chr10 56176853 71 - 130633972 TGCGGGTTGGATGCTGGTGGCTGTGTCGTA---GACGTGGTTTCTCTGGCGTGTGTGGCACTGGCAGT-GCATTT
  121. s rn3.chr20 14527099 71 + 55296979 GGTGGGTTGGATGCTGGTGGCTGTGTCGTA---GACATAGTTTCTCTGGCGTGTGTGACACTGGCAGT-GCATTT
  122. s canFam1.chr26 4431339 74 - 41009621 ACGGTCGTGGATGCTGGTAGCTGTGCGACAGAGGGCTCCACGTCCTCGGCAGGTGTCACACTGACAGT-GTGCTT
  123. s galGal2.chr6 27913789 44 - 33893787 ACTGCGGCCGGTGGTGGTA------------------------------CAGCTGGCTGTTTGGCAGG-GGATTT
  124. s fr1.chrUn 137770015 54 + 349519338 TCTGTAGTGGGAGCAGGGG--------------------GTGGTGTTGGCCGGAGAGACACTGGCCGCAGCGTT-
  125. a score=9016.0
  126. s hg17.chr10 55251953 19 + 135413628 AACACCTGTTATACAGACA
  127. s panTro1.chr8 56162982 19 + 138322177 AACACCTGTTATACAGACA
  128. s mm5.chr10 56176924 19 - 130633972 AGCAGCTGGTGCAGAGATG
  129. s rn3.chr20 14527170 19 + 55296979 AGCAGCTGGTGTAGAGATG
  130. s canFam1.chr26 4431413 19 - 41009621 CACAACTGGTACACAGACA
  131. s fr1.chrUn 137770069 19 + 349519338 GGTGCCTCCGAAAGGGACG
  132. a score=71637.0
  133. s hg17.chr10 55251972 300 + 135413628 CACTCTGTGGACAGAAATGAAGCTgaaggaggtggagggcaaggaatagaaggaggtggt---ggaggaagaggagttggaaatggaggtagaagaggtggTGTTGGGGGACCAGACGTTGAAACGGAAAGTGGAAAAAATGTaggaggaggaagaggaagagggatagaaggaggagagggaggaggacaaaaaagagaaaaaggagaaatgtcaggaggaggagcaagaggagcaggagcaggaggaggagaaggaggagaaataggaggaggagggggaaggggaCAGGCAGAAGGAGAG
  134. s panTro1.chr8 56163001 276 + 138322177 CTCTCTGTGGACAGAAATGAAGCTgaaggaggtggagggcaaggaatagaaggaggtggt---ggaggaagaggagttggaaatggaggtagaagaggtggTGTTGGGGGACCAGACGTTGAAATGGAAAGTGGAAAAAATG------------------------TagaaggaggagagggaggaggacaaaaaagagaaaaaggagaaatgtcaggaggaggagcaagaggagcaggagcaggaggaggagaaggaggagaaataggagaaggaggaggaaggggaCAGGCAGAAGGAGAG
  135. s mm5.chr10 56176943 243 - 130633972 CTGTCTGTGGATGGAATGGACGTGGAAGGAGGCTGTGGGAAGAGGCGGGGAGCTGGTGGCCGAGGAGGAGGAGGAAGTGACAGTGGAGGAGGAAGAGGTAGAGAAGAAGTAGGGGGTGTAGAAATGGGAA---GAGAAAATGTAACAAGTTGTGGGGGAGGAGGGTTAGGGGGAGAAAGGGGAAGAGG---------------------------------------AAAAGTGGTAAAGGCAATGGGAGGTCTAGG---------AAGAGGCGGATGTGGGAGGGG---------AGCAGAG
  136. s rn3.chr20 14527189 243 + 55296979 CTGTCTGTGGATGGGACGGAAGTGGAAGGAGGCAGTGGGAAAAGGCGGGGAGCTGGTGGTCGAGGAGGAGGAGGAAGTGATGGTGGAGGAGGAGGAGGAAGAGAAGAGGCGGGGGTTGTAGAAATGGGAA---GAGAAAATGTAAGAAGTTGGGGGCGAGGAGGGTTAGGGGAAGAAAGGGGAAGAGG---------------------------------------AAAAGTAGTAAAGGCAATAGGAGGTTGAGG---------AAGAGGCAGCTGTGGGAGGGG---------AGCAGAG
  137. s canFam1.chr26 4431432 195 - 41009621 CACGTAGTGGATGGAGCCCAAGACGGAGGGGACAgaggagaaggaagaggaggtgatggt---ggggggagggag---ggaagtgaaggtagaagaggtgatg------------------------------gagaagaag---------agggaggagaaggtggggtggaaagtgggagaaatgg---------------------------aggtggaggaggaagaggaggaggaggaggaggaggggcagg---------------------------tgg---------aggagAG
  138. a score=139704.0
  139. s hg17.chr10 55252272 227 + 135413628 ATGTTTGGTGGATGGGCAAAATTTTCAAAAATATTTCTTTCGGTTTCAATAGGTAACATA------CAAATAGGTGTCTCTCTCCTAGAGAGTGAAGAATGTAAAACACAAGGCCTT---GAAGGAGAAAGTTCCAAGGAACACTCAGCAGGAGAACTGATGACATTAGGTTCT------GATTTGAGTTCCACAGTTCTTGAAACAGTTGGCAAAGTGGAGAATGAGAAGTGAGGCCTGGG
  140. s panTro1.chr8 56163277 227 + 138322177 ATGTTTGGTGGATGGGCAAAATTTTCAAACATATTTCTTTCGGTTTCAACAGGTAACATA------CAAATAGGTGTCGCTCTCCTAGAGAGTGAAGAATTTAAAACACAAGGCCTT---GAAGGAGAAAGTTCCAAGGAACACTCAGCAGGAGAACTGATGACATTAGGTTCT------GATTTGAGTTCCACAGTTCTTGAAACAGTTGGCAAAGTGGAGAATGAGAAGTGAGGCCTGGG
  141. s mm5.chr10 56177186 230 - 130633972 ATGCTAGGTGGATGGGGAGCGATCTCAAAAGAGTTCCTTTTTGGTTCTGTATCTGATGCA------CATGTGGGAGTCTCTCTCTTAGAGCTTAAGGAGTTTAAAATACGGGGTCTCAGAGGAGGAGAAAGTTCCAAGGTGCAGTCAGCGGGAGAAGTGACCACATTAGGTTCC------GACCCGAGTTCCACCGCTCTGGAAATCGTTGGCAGAGTTGAGAAAGAAAAGTGAGACCAAGA
  142. s rn3.chr20 14527432 230 + 55296979 ATGCTGGGTGGATGGGGAACCATTTCAAAAGAGTTCCTTTTTGTTTCTGTATCGGAGGCA------CAAGTGGGAGTCTCTCTCTTAGAGCCTAGGGAGTTTAAAACGCGGGGTCTCCGAGGAGGAGAAAGTTCCAAGGTGCAGTCAGCGGGAGAAGTGACAACGTCAGGTTCT------GACCCGAGTTCTACCGCTCTTGAAATTGTTGGTAGAGTTGAGAAAGAAAAGTGGGACCAAGA
  143. s canFam1.chr26 4431627 227 - 41009621 ATGTTTGGTGGTTTGGGAAGGATTTCGAAAATGTTCCTTCCGGCTTCAACTGTCAACAGA------CATGTGGGCATCTCTCTCCTAAAAACCGGGGAATTTAAAATGCAGGGCATT---GAAGGAGAAAGTTCCAAAGAACAGTCCGCGGGAGAGATGATGACATCAGGTTCT------GCCTGGAGTTCCACAGTTCTCGAAACAGTTGTCAAAGTGGAGTAGGAGGAGTGAGACGAAGG
  144. s galGal2.chr6 27913978 239 - 33893787 gTTTTAGGTGGGTCTGGAATGTTTTCTGTAACTTCTCCTTTGGTCTGAGGAGCTAGAAAACTTTGGCAAACGGGTTTCTTTATCCTAAAAGACGGAGGAGTTGGCTTGCGAGTTGGT---GGAGGAGAAAGTTCTTCAGGATAGTCATGGTGAGTGATGATTACAGAGGGGACCGCAGAGGGCTCCGGCTCAACTACTTCACAAGGTGTTGGAGAGGACAGAGGAGAAGAGCGAAGGCAAGG
  145. a score=27341.0
  146. s hg17.chr10 55252499 121 + 135413628 AAAGCAAAATG-------AAGAGTCT--G--------------------------AAGAGA------------------------------------GAGATTTCAACTGTTCTGTTCCTTCTATCATCAGTGTTTCACCTTGCCTTATTTCCTCTTTCTCTGTC-AAATTTGCCTCTTCAGTTGT--AAGCAAT
  147. s panTro1.chr8 56163504 121 + 138322177 AAAGCAAAATG-------AAGAGTCT--G--------------------------AAGAGA------------------------------------GAGATTTCAACTGTTCTCTTCCTTTCATAATCAGTGTGTCACCTTGCCTTATTTCCTCTTTCTCTGTC-AAATTTGCCTCTTCAGTTGT--AAGCAAT
  148. s mm5.chr10 56177416 118 - 130633972 GGAGGAAAAAG-------AAGAGCCA--G--------------------------AAGACA------------------------------------GAGATTTCAGCTGCTCTGTTTGCTGGACGATTAGGGTGTCTCTGTGTC---CCCCTTCTTTCTCTGAC-TCGTGGGCATCTTCAGTTGC--CAGCAGA
  149. s rn3.chr20 14527662 118 + 55296979 GGAGGAAAAAG-------AAGAGCCC--G--------------------------AAGACA------------------------------------GAGATTTCAGTTGCTCTGTTTGCTGTACGATTAGGGTGTCTCTGTGCC---CCCCTTCTTTCTCTGAC-CCACGGGCATCTTCGGTTGT--CACCATT
  150. s canFam1.chr26 4431854 121 - 41009621 AGAGAGAAATG-------AGGAGTCT--G--------------------------AAGACA------------------------------------GAGATTCCACATGCTGTGCTCCACGTGGGAGCAGGGGCTGGCCTGGCCTTGCTTCTCCTGTCTCGGGC-ACACTGGATTCTCCAGCTGC--AGGCAGG
  151. s galGal2.chr6 27914217 193 - 33893787 AGAAGCAAACACACTTTTAGGAGACT--GCTCTAGCGTGTTATCTCTTTCTTGCAAACAGATGCTGTGCGTTGGTGAACGGGTGGATTTGACATCAGGAGATTTCACTTGCTTCATTTCCTGCAAAGCCTGCTGCTCAAATTGTCTTGCCTTCTCTTTTACAGTTAACGTGGGGCCACTTATTTTTTGAAATAGT
  152. s danRer1.chr12 3416078 117 + 24175710 AAAACAGAGAG-------AATAATTTCGG--------------------------AAGAGA------------GTGACCCAC---------------GAGAGTCCTGACCTTGCCTCAACTTTAC-------GTCCTGCAAGGCC--------TGCTGCTCAAAC-TGTCGTGCCTGCTCTTTTAC--AGTCAAT
  153. a score=18054.0
  154. s hg17.chr10 55252620 34 + 135413628 GGATTGCTGCTACCTCTTTTGTTTGTACAGATTC
  155. s panTro1.chr8 56163625 34 + 138322177 GGATTGCTGCTACCTCTTTTGTTTGTACAGATTC
  156. s mm5.chr10 56177534 34 - 130633972 ACGTTGCTGCTACCTCTCTGGCTTGGGTGGCATC
  157. s rn3.chr20 14527780 34 + 55296979 AGGTTGCTGCTACCTTGCTGGCTTGGGTGGCATC
  158. s canFam1.chr26 4431975 34 - 41009621 GGGTTCCTACTACCTCTCTGGTTTGGAGGGGTTC
  159. s galGal2.chr6 27914410 34 - 33893787 GGACTGCTAATATCAACTCTGCTATGCTGATTTT
  160. a score=75824.0
  161. s hg17.chr10 55252654 151 + 135413628 CAGTGTTTTCATTTTCAGCTTTCTGCCTGGTGCCTTG------------CCACTGCTGCAGATCTATGATCTCTGGTCTATT----TGGAACT--TTCCTCATCAGCCTCCTGGGTAAGCTGACTGACTGACTCCACAGCCTCTGAATCTTTTCTCTTGGGCCCCTCAG-
  162. s panTro1.chr8 56163659 151 + 138322177 CAGTGTTTTCATTTTCAGCTTTCTGCCTGGTGCCTTG------------CCACTGCTGCAGATCTATGATCTCTGGTCTATT----TGGAACT--TTCCTCATCAGCCTCCTGGGTAAGCTGACTGACAGACTGCACAGCCTCTGAATCTTTTCTCTTGGGCCCCTCAG-
  163. s mm5.chr10 56177568 151 - 130633972 TGGCGCTTTCGCATTCAGCTCTCTGATTGGTGATCTG------------CCACTCCACCAGGTCTATGGTCTCTGGCCTGTT----TGGGGCT--TTCCACATGAGCCGCCTAGGAAAGCTCACAGACTGATTCCACACCCTCTGGATCTTTTCTCTTGGGCCCCTCAG-
  164. s rn3.chr20 14527814 151 + 55296979 TGGTTTTTTCGCATTCAGCTCTCTGCCTGGTGATCTG------------CCACTCCACTAGGTCTATGGTCTCTGGTCTGTT----TGGAGTT--TTCCACATCAGCCGCCTAGGAAACCTCACAGACTGATTCCACACCCTCTGGATCTTTTCTCTTGGGCCCCTCAG-
  165. s canFam1.chr26 4432009 151 - 41009621 CAGGGCTTTCCTTCCCACCTTCCGGCCTGCGGCTCCT------------CCGTGGCTCCAGCTCTAGGGTTTCTGGCCTTCT----GGGAAGT--TCCCACACTGGTCTCTGAGGGAAGCACACTGGCTGATGCCATATCCTCTGAAACATTTCCCTTGGGCCCCTCAG-
  166. s galGal2.chr6 27914444 139 - 33893787 CAGTTCCTTCATTCTCTGCTTTGAGTCTTTCCTGTTG------------CCACTGAACAGGGTCCATGATAACCGGCCTGCT----CAGAGAA--CCAGGCGCGTGCCTCTTAGTAACGTGAGCTGGTACTGTCCATGCACGGTGACT------------GCCTCCCAA-
  167. s danRer1.chr12 3416235 163 + 24175710 CAATCATCTCCTTGCTGTCCTTAAGGCTGGCCTTTAGCAGCTGCAGCTCCCACTGAACTGGATCCATCACCACCCTCCTACTCCGCTGAGATTCGTCCCACTTGTGCAACCGAG--AAGGTAATGTCCAG-----GAATGTCCTGAGCCTGAATTCGGGAATCCCATAAT
  168. a score=17919.0
  169. s hg17.chr10 55252805 66 + 135413628 AGACTTACTCTTGGCTTGTATTTTGGGTGAAAATGGGTCTACAAAATC---TGTTCTCTGTGAAATGTC
  170. s mm5.chr10 56177719 66 - 130633972 AGACTGACTCTTAACTTGTGTTCTGGGTGCCAACAGCTCTTCAAAATC---TGTTCGTGGCTGAAGGTC
  171. s rn3.chr20 14527965 66 + 55296979 GGACTGACTCTTAACTTGTGTTCTGGGTACAAATAGCTCTCCAAACTC---TGTTCCAGGCTGAAGGTC
  172. s canFam1.chr26 4432160 66 - 41009621 GGACTTACTCCTGGCTTGTGTTTTGGGCAAAAATGAGTCTATAAAATC---TGTTCTTAGTAAAAAGTC
  173. s galGal2.chr6 27914586 69 - 33893787 GGCATCTCTCAAGACTAATTGCATAGGAGAAAGAGTATCTAGGGCATCGCTTCTTTTCCGCAGTAACCC
  174. s danRer1.chr12 3416398 52 + 24175710 GGACTTACTCAGACCTCTCATACTGGGTGAATACATGTCTAAGAGGTA---ACTC--------------
  175. a score=243755.0
  176. s hg17.chr10 55252871 253 + 135413628 TGAATTTGTTGAT--------ACTTGACTTATGTTTTCCTTATAAAGGGGATTATGGGCACTTAAGTCATCCTCATCAGATAGAAATGTGAATTTTCTTGCAGACTTCAGTTTGTTGCTCTTAAGTGATCCGTCTACATGAGCTGACTTGTGAGCCTCAATAGTATTGGAAGAAAAGGGCATCACAACTTGTTGATGTTTCCTGTCTTCTGAGACTGAGTTATTTCCCCTGCTT--------TGTTGAAAATGGTAGAGAAGGA--------AAAGA
  177. s panTro1.chr8 56163914 253 + 138322177 TGAATTTGTTGAT--------ACTTGACTTATGTTTTCCTTATAAAGGGGATTATGGGCACTTAAGTCATCTTCATCAGATAGAAATGTGAATTTTCTTGCAGCCTTCAGTTTGTTGCTCTTAAGTGATCCGTCTACATGAGCTGACTTGTGAGCCTCAATAGTATTGGAAGAAAAGGGCATCACAACTTGTTGATGTTTCCTGTCTTCTGAGACTGAGTTATTTCCCCTGCTT--------TGTTGAAAATGGTAGAGAAGGA--------AAATA
  178. s mm5.chr10 56177785 253 - 130633972 TGAGTTTGTTGAC--------CTTTGACCTATACTTTCCATGTAAAGGGGATTATGGGTACTTAAGTTATCCTCATCAGGAACAAATGAGAACGTCCTTGCTGGGTTAGGCTGGCTCTCCTTAAGTGGTCCCTCTACATGAGCTGGCTCATGAGACTCAGTGGTACTGGAGGAAAAGGCCATCCCATCGCGATGACTGCTCCTGTCTTCTGGGACTGAGTTATTTCCCCTGCTT--------TGTTCAAAATGGTAGAGAAGGA--------AAAGA
  179. s rn3.chr20 14528031 250 + 55296979 GGAATTTGTTGAC--------CTTTGACCTATACTTTCCATATAAAGGGGGTTATGGGTACTTAAGTCATCCTCATCTGGAAGAAATGAGAACGTCCTTGCTGGGTTAGCTTGGTTG---TCAAGTGGTCCCTCTACATGAGCTGGCTCATGAGACTCAGTGGTACTGGAGGAAAAGGCCATCCCGTCACGATGACTGCTCCTGTCTTCCGGGACTGGGTTATTTCCCCTGCTT--------TGTTCAAAATGGTAGAGAAGGA--------AAAGA
  180. s canFam1.chr26 4432226 253 - 41009621 GGAGTTTGTTGGT--------CTTGGATCTACAGCTTCCTTATAAAGAGTACTGTGGAGACTGAAGGCGTCCTCCTCAGACATCAGTGTGAACTTCCTTGCTGACTTGGGCTGGTTGTTCCTAAGGGATCCATCTACATGAGCCTGCTTGTGAGCCTCAATAGTGCTGGAAGGAAAAGGCATCACACTGTGTGGACTTTTCCTGTCTTCTGAGACTGACTTATCTCCCCTGCTT--------TGTTGGAAATGGTAGAGAAGGA--------AAAGA
  181. s galGal2.chr6 27914655 253 - 33893787 AGCAGCAGCAGGA--------CTTTGAGTGACACCTTCCACATACAGTGGGTTTTGAGTAGTTAGTGGGTTCTCGTCAGATAAGAAAGTAATGTTACTTGAAGATTTGGGGAGGTTATTGTTCAATGATCCATTGATATTAGATTGCTTGTGAGCCTCAATAGCACGGGAAGCAAAGCTGCTTATAACTCTCTGCCGATCTCCTTCTTCTAAGACTGACTTTTTTCCCCTGCTT--------TGTTGGAAATGGTAGAGAAGAA--------AAAGA
  182. s danRer1.chr12 3416450 277 + 24175710 CGATTTTGGTGCTCAGGGCTGCCAAGAGTGACATCATCACGGTACAGGGGGTTGGTTGTAGTAAGTGGGTTGTCATCTGAAAGAAAGGTAATGTTGCTCTCCGACTTGGGAAAGTTGTTGAGCAGGATTCCGTTGGCGGTGGACAGCTTGTGAGCAGTGATAGCACGGGAAGCGAATGAGCTAATGAGACGCTGCCGATCACCATCCTTCAGAACACACCTCTTAGTCCTGATTTCAGCAAGTGTGGAAAGAGATAAAGATGAACTTAACAGAGAAT
  183. a score=136951.0
  184. s hg17.chr11 116124407 94 + 134452384 TTAC--ATATCCTCAACACTCCATTTGTAGGCAAGTTCCTCCACTGCCTTCTTGCTGGCAAGCCTGGCAAAGCGCTTCTGTTCAAATCCATTGGAT
  185. s panTro1.chr9 118123572 94 + 136640551 TTAC--ATATCCTCAACACTCCATTTGTAGGCAAGTTCCTCCACTGCCTTCTTGCTGGCAAGCCTGGCAAAGCGCTTCTGTTCAAATCCATTGGAT
  186. s mm5.chr9 77776147 94 - 124177049 TCAC--ATATCCTCCACACTCCACTTGTAGGCAAGCTCCTCCACAGCCTTCTTGCTGGCGAGCCTGGCAAAGCGCTTCTGTTCAAAGCCATTGGAT
  187. s rn3.chr8 79766056 94 - 129061546 TCAC--ATGTCCTCAACACTCCACTTGTAGGCAAGCTCCTCCACAGCTTTCTTGCTGGCAAGCCTGGCAAAGCGCTTCTGTTCAAAGCCATTGGAT
  188. s canFam1.chr5 72268290 94 - 92064832 TTAC--ATATCCTCAACACTCCACTTGTAGGCAAGTTCCTCCACCGCCTTCTTGCTGGCAAGCCTGGCAAAGCGCTTCTGTTCAAATCCATTGGAT
  189. s galGal2.chr24 4774582 96 + 5910111 TTGCGAAAGTCTTCAATGCTCCACTTGTATGCAAACTCCTGAGCTGCCTTCTTGTTGGCCATCCTGGCAAAGAACTGCTGCTCAAATCCATTGGAC
  190. s fr1.chrUn 206483220 94 + 349519338 TCAC--ATATCTTCTACACTCCACTTATAGGCTGCCTCCTGAGCAGCTCTTTTATCTGCCATTCTCTCATAGCGTTTCTTCTCAAAACCATTTGAC
  191. a score=311622.0
  192. s hg17.chr11 116206508 55 + 134452384 ATGCAGCCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTGGCCTCTGCCC
  193. s panTro1.chr9 118206938 55 + 136640551 ATGCAGCCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTGGCCTCTGCCC
  194. s mm5.chr9 77840023 55 - 124177049 ATGCAGCCCCGGACGCTCCTCACTGTGGCCCTCTTGGCTCTCCTGGCATCTGCCC
  195. s canFam1.chr5 72342544 55 - 92064832 ATGCAGCCCCGGGTCCTCCTCGTCGCTGCCCTCCTGGCGCTCCTGGCCTCCGCCC
  196. a score=21699.0
  197. s hg17.chr11 116211733 24 + 134452384 TCACTGGGTGTTGAGCTTCTTAGT
  198. s panTro1.chr9 118212083 24 + 136640551 TCACTGGGTGTTGAGCTTCTTAGT
  199. s mm5.chr9 77844334 24 - 124177049 TCACTGGGCAGTCAGAGTCTCGCT
  200. s canFam1.chr5 72346944 24 - 92064832 TCACTGCGCGTTCAGCTTCTTGGT
  201. a score=166504.0
  202. s hg17.chr11 116211757 354 + 134452384 GTACTCCTCGAGAGCGCTCAGG---------AAGCTGACCTTGAAGCTCTCCAGCACGGGCAGC-AGGCCTTGGCGGAGGTCCTCGAGCGCGGGCTTGGCCTTCTCGCTGAGCGTGCTCAGATGCTCGGTGGCCTTGGCGTGGTACTCGGCCAGTCTGGCGCCGCCGTTCTCCTTGAGAGCCTCAAGGCGCGCGGCCAAGCGCTGGCGCAGCTCGTCGCTGTAGGGGGCCAGATGCGTGCGCAGCGCGTCCACATGGGCGCGCGCGCGGTCGCGCATCTCCTCGCCCAGTGGGCTCAGCTTCTCTTGCAGCTCGTGCAGCTTCTGGCGCGCGCCCTCTTGGAGCTCTGCGCGCAGCGGCTCCAC
  203. s panTro1.chr9 118212107 354 + 136640551 GTACTCCTCGAGAGCGCTCAGG---------AAGCTGACCTTGAAGCTCTCCAGCACGGGCAGC-AGGCCCTGGCGGAGGTCCTCGAGCGCGGGCTTGGCCTTCTCGCTGAGCGTGCTCAGATGCTCGGTGGCCTTGGCGTGGTACTCGGCCAGTCTGGCGCCGCCGTTCTCCTTGAGAGCCTCAAGGCGCGCGGCCAAGCGCTGGCGCAGCTCGTCGCTGTAGGGGGCCAGATGCGTGCGCAGCGCGTCCACATGGGCGCGCGCGCGGTCGCGCATCTCCTCGCCCAGTGGGCTCAGCTTCTCTTGCAGCTCGTGCAGCTTCTGGCGCGCGCCCTCTTGGAGCTCGGCGCGCAGCGGCTCCAC
  204. s mm5.chr9 77844358 348 - 124177049 GGCCTTGTCGATCACACTCTGG---------ACTTGGGTCTTAAGCGTCTCCAGCATGGGCATC-AGACTATGGCGCAGGTCCTCCAGCGCAGGTCTGGCTTTCTCGCCAAGTGTCTTCAGGTGGGTTTTGGCCCTGGTGTGGTACTCGTTCAAGGTAGGGTTGC------TCTTGAGCTCAGCCAGGCGCTGGGCCAGGCTCTCGCGCATCTGTTCGCTGTGGGGCGCTAGCTGTGTGCGCAGAGAGTCTACGTGTGTGCGCATGCGGTCGCGAAATTCCTCAGCCACAGGGGACAGTCTCCCTTGCAGCTCCTGCAGCTTCTGGCGCGCGCTCTCCTGCAGCTCGGCGCCCAGAGGCGCCAC
  205. s canFam1.chr5 72346968 354 - 92064832 GGCCTCGTCGATGGCAGCCAGC---------AGGCTGACCTTGAAGCTCTCCAGCACGGGCAGC-AGGCCCTGGCGCAGGTCCTCGAGCGCGGGCCTGGCCTTCTCGCCGAGCGCGCTCAGCTGCTCGCTGGCCCTGGCGTGGTACTCGGCCAGGCTGGCGCCGCCGCCCTCCTTGAGCGCCTGCAGCCGCGCGGCCAGGCGCTCGCGCAGGTCGTCGCTGTAGGGGGCCAGCTGGGCGCGCAGCGCGTCCACGTGGGTGCGCGCGCGGTCCCGCAGCTCCTCGCCCAGCGGGCTCAGCTTCTCCTGCAGCTCCTGCAGCTTCTGGCGCGCGCCCTCGCGCAGCTCCGAGCCCAGCGGCGCCAC
  206. s galGal2.chr24 4799439 363 + 5910111 GGACTTCTGGAGTTCGTCCAGGAAGGAGATCAAGCGGTTCTTGAGGTTCT-CAGCATAGGGGGTGAGGCGCTCCCTGAATTCCTGCACCAGAGGCGTCATCTTCTCACGCAGGTTGCTGAGCTGCTCCATCACCTTGGCCTGGTACTCGGAAGCCTGGGGGATGCCCTTCTCGCGGATCTCCTCCAGCTTCTGGCTCAGCTTCTGCCGCAGCTCATCGCTGTATGGCGCCAGGTTCTTGCGCAGCTCCTCCACGTGCCCACGCAGACGATCCCGCGCCTCCTCAGCCACCGGGGTCAGCTTGGCCTGCATCAGCTCCACCTTCTGCTTGGTGAGCTCCTTCAGCTCCTGAGCCACGGGCGTCAG
  207. a score=84013.0
  208. s hg17.chr11 116212111 105 + 134452384 CTTCTGGCGGTAGAGCTCCATCTCCTCCTGCCACTTCTTCTGGAAGTCGTCCAGGTAGGGCTGCACCTTGGCCTTCACCTCCTCCAGATCCTTGCTCATCTCCTG
  209. s panTro1.chr9 118212461 105 + 136640551 CTTCTGGCGGTAGAGCTCCATCTCCTCCTGCCACTTCTTCTGGAAGTCGTCCAGGTAGGGCTGCACCTTGGCCTTCACCTCCTCCAGATCCTTGCTCATCTCCTG
  210. s mm5.chr9 77844706 105 - 124177049 CTTCTGGCGGTAGAGCTCCACATCCTCTTTCCATTTCTTCTGGAATTCGTCCAGGTAGGGCTGCACCTTCTGTTTCACTTCCTCTAGGTCCTTGTTCATCTCCTG
  211. s rn3.chr2 192507462 102 + 258222147 CTCCTCTCGGAAATGCACGATCTCATCCTGC---TTCTCCTGCAAGTCTTCCAGAAGCTGCCGCCGCTCAGCCTTCTGCTGCTCCAGCTCCTTCTCCAGCTCCTG
  212. s canFam1.chr5 72347322 105 - 92064832 CTTCTGGCGGTACAGCTCCACCTCCTCCTGCCACTTCTTCTGGAAGTCGTCCAGGTAGGGCTGCACCTTCTGCTTCACCTCCTCCAGGTCCTTGCTCATCTCCTG
  213. s galGal2.chr24 4799802 105 + 5910111 GCGCTGGCGGTACTGCTCCAGCTCCTCCGTCCACTTGGCGGAGAACTGGTCCAGGAAGGGCCGGATCTTCTCCTTCACCTCCTCCAGGTCCTTGGTCAGCTCAGC
  214. a score=57194.0
  215. s hg17.chr11 116212216 121 + 134452384 CCTCAGGCCCTCTGTCTCCTTTTCCAGGTTATCCCAGAACTCCTGGGTCACAGGGCCGAGCTGTTCGCGCAGCTTGCTGAAGGTGGAGGTCACGCTGTCCCAGTTGTCAAGGAGCTTTAGG
  216. s panTro1.chr9 118212566 121 + 136640551 CCTCAGGCCCTCTGTCTCCTTTTCCAGGTTATCCCAGAACTCCTGGGTCACAGGGCCGAGCTGTTCGCGCAGCTTGCTGAAGGTGGAGGTCACGCTGTCCCAGTTGTCAAGGAGCTTTAGG
  217. s mm5.chr9 77844811 121 - 124177049 TCTCACCCAATCTGTTTCTTTCTCCAGGTTATCCCAGAAGTCCCGAGTCAATGGGCCCAGCCGTTCCTGCAGCTGACTAACGGTTGAACCCAGAGTGTCCCAGTTTTCCAGGAGATTCAGG
  218. s canFam1.chr5 72347427 121 - 92064832 CCGCAGCACCTCCGTCTCCTTCTCCAGGTTATCCCAGAACTCCTGCGTGACCGGGCCGATCTGTTCGCGCAGCTTGGTCACCGTGCTGCTCAGGCTGTCCCAGTTGTCCAGGAGTTTCAGG
  219. s galGal2.chr24 4799907 121 + 5910111 ACGCAGAGCCTCGGTGTCCTTCAGCCACATCTCGCGCACCTCCTTGTAGTAGGGAGCCATGTCCTCACGCAGCTTGGCAGCCGCGGCACTCAGCGTGTCCAGGTTGTCAGCCAGCTTCAGG
  220. a score=4872.0
  221. s hg17.chr11 1812377 30 + 134452384 ATGCTCCACCTGCATGGCTG--------------GCAAACCATG
  222. s panTro1.chr9 2001217 30 + 136640551 ATGCTCCACCTGTATGGCTG--------------GCAAACCACG
  223. s mm5.chr7 130142453 26 + 133051633 -----CCAACTGGACTACCGT-------------GTAGAAGATG
  224. s rn3.chr1 202843225 26 + 268121971 -----CCAACTAGACTGCCTT-------------GTAGAAGATG
  225. s canFam1.chr18 56425269 44 + 66173745 AGGCTCCACCTGTGTGACTCCACCCGTGTGACCGACAAACCATG
  226. s danRer1.chrNA 165962846 24 - 390413307 -----AGTTCAGGAAGTCCA--------------GGAAGAGA-G
  227. a score=333744.0
  228. s hg17.chr12 38440094 227 + 132449811 TTATTCCACATCAGAAGCATCATTGTCAGAAAGATGATAGTTACTTCCCTTTACCCGAATATATTCAATATATCTCCCTTCATCAGAATCTG---AAGTGCCACATGTACATAGCCTGTTGTCAAAGAGTGATTCAATTTCCTCTAATTTTTTGCCTTTGGTCTCAGGAAGACAGCCATAGATGAAAAGGAGTCCCACAGCAGCAAATCCAGCATAGAGGAAGAAAGCTC
  229. s panTro1.chr10 39016533 227 + 135301796 TTATTCCACATCAGAAGCATCATTGTCAGAAAGATGATAGTTACTTCCCTTTACCCGAATATATTCAATATATCTCCCTTCATCAGAATCTG---AAGTGCCACATGTACATAGCCTGTTGTCAAAGAGTGATTCAATTTCCTCTAATTTTTTGCCTTTGGTCTCAGGAAGACAGCCGTAGACGAAAAGGAGTCCCACAGCAGCAAATCCAGCATAGAGGAAGAAAGCTC
  230. s mm5.chr15 91666098 227 + 104138553 TTACTCCACGTCAGAAGCGTCGTTGTCGGAGAGATGATAGTTGCTTCCCTTCACGCGGATGTACTCAATGTACCTCCCTTCATCCGAGTCGG---CAGCGCCACATGAACATAGCCGGTGGTCAAAGAGCGATTCGATTTCCTCCAATTTTTTCCCCTTGGTTTCAGGGAGGCAGCCATAGACAAAAAGCAGTCCCACAGCGGCGAATCCGGCGTAGAGGAAGAATGCTC
  231. s rn3.chr7 129719269 227 + 143082968 TCACTCCACGTCCGAGGCGTCGTTGTCGGAGAGATGGTAGTTACTTCCCTTCACGCGGATGTACTCGATGTACCTGCCCTCGTCCGAGTCCG---CGGTGCCGCAGGTGCACAGCCGGTGGTCGAAGAGCGATTCGATTTCCTCTAGTTTTTTCCCTTTGGTTTCAGGAAGACAGCCATAGACGAAAAGCAGTCCCACAGCGGCGAATCCGGCGTAGAGGAAGAACGCTC
  232. s canFam1.chr27 32235556 227 - 49087461 TTATTCCACATCAGAAGCATCGTTGTCAGAAAGATGATAGTTACTTCCCTTCACCCGAATATATTCAATATATCGCCCTTCATCAGAATCTG---AAGCACCACATGTACATAACCTGTTGTCAAAGAGTGATTCAATTTCCTCTAATTTTTTCCCTTTGGTCTCAGGAAGACAGCCATAGATGAAAAGGAGTCCCACACCAGCGAATCCAGCATACAGGAAGAAGGCTC
  233. s galGal2.chr1 179729132 227 - 188239860 TTATTCCACATCAGAAGCATCATTGTCAGAAAGATGGTAATTACTTCCCTTCACCCGAATATATTCAATATACCTCCCTTCATCAGAATCTG---ACATACCACATGTACATAGCCTGCTTTCAAACAAAGATTCAATTTCCTCTAGTTTTTTCCCTTTAGTCTCAGGAAGGCAGCCATAGATGAAAAGGAGTCCCAGGCCAGCAAACCCTGCGTACAGAAAGAAGGCTC
  234. s fr1.chrUn 213944794 227 + 349519338 CTAGTCCACATCAGAGGCGTCGCTCTCAGACAGGCGGTAGTTGCTGCCCTTTACCCGGATGTACTGCACGTTCCGGCGGTCGTTGCGGGAGG---AGGCTCCGCAGGAGCAGAGCGGACCGGAGAACAGGCTCTCGATGTCCTCCAGCTGCAGGCCCTGGGTCTCCGGGAGGCAGCCCAGGATGAAGAAGAGGCCCAGCACCACCAGGCCAGCGTACATGAAGAACGCCC
  235. s danRer1.chrUn 27538197 206 + 367113659 TCACTCCTCCTCATCCTCGTCTTCATCAGAG---CGGGAGTTTCCTCCGTTTACCCGCATGTACT---------------------GATCTGTGTGGGCTCCGCAGCTGCAGAGTCGCCTGCTGAACAGAGACTCGATCTCCTCCAAGCGCAAACCCTTGGTCTCCGGCAGACACCCCGACACGAACACGAAGCCCAGCAGAGCCAGAGCAGCGTACAGGAAAAACGCTC
  236. a score=115495.0
  237. s hg17.chr13 112381694 259 + 114142980 ATGAACTCACCAGAGGCGAGGCTCTGCGTTGCTCAATGCAGAGACTCTTACCCAGGGTGTCAGCCTCTGAAAGATACACGTGCCTGGGCCTCTTCCCTGAAGATGGACCCGGCAGGTCTGGAGGGAGG-CCCCCGTGATGAATCCCG-TGATGAGCCGCCGATCCGAGCTCAGGCTGCGTCATGGGACCAGCCACAAGGTTGCCTGACC-TATAAAGGTCGCAGGAGTGCCTCAGGGACACAGAAGCAGTTACAGCTGCCAG
  238. s panTro1.chr14 95994697 259 + 97804244 ATGAACTCACCAGAGGCGAGGCTCTGCGTTGCTCAATGCAGAGACTCTTACCCAGGGTGTCAGCCTCTGAAAGATACACGTGCCTGGGCCTCTTCCCTGAAGATGGACCCGGCAGGTCTGGAGGGAGG-CCCCTGTGATGAATCCCG-TGATGAGCCGCTGATCCGAGCTCGGGCTGCGTCATGGGACCAGCCACAAGGTTGCCTGACC-TATAAAGGTCACAGGAGTGCCTCAGGGAGACAGAAGCAGTTACAGCTGTCAG
  239. s mm5.chr8 12764663 188 + 128688707 ATTTGTTCACCAGAG----TGTCCTGGCCTCCTGCCTATGTGGACTCATTCCCAAGG-ACCAGCCT-TGAAGGACGCA---ATGTAGGGCTCC---------ATGGA------------GGAGGGAGG-TCTGTGTGACA-----------------------------------------CTGGGACTTGCCACAGGTCAG--TGATTGTTCAGAGGTCACAGGAGTGCCACCCTCAGGCAGAGTCATCTGTCTTTTCCAG
  240. s rn3.chr16 8607378 190 - 90224819 ATCCATTTACCAGAG----CGACCTGGCCTCCTGCCTAGGGGGGCTCATTCCCAAGG-ACCGGTCT-TGAAGGGTGTA---TTATATGGTTTC---------ATGAA-----------GGGAGGGAGG-TCTGTGTGACC----------CTGGGACACCGCT------------------------------ACAGGTCAG--TGATTGTTCGGAAGTCACAGGAATGCCACCCTCAGGAAGAGTTATCTATCTTTTCCAG
  241. s canFam1.chr22 63116876 177 + 64236280 A------------------TGTGCTGGTCTGCTCAGGGCAGGAGCTCTTCGCCGGAT-GTCAGTCC-CGA--GACGCACATGCCTGGGCTTCT-------------CCCTCACAGGACTGCAGCAAGGACCACCACGGTGGACACTGAGGAGGCCCCGCCAGGCCGA----------------GGGATGGAGGAGAGGCCAT--CGATG------GAGCAGCATGGGGTCGTCAT--------------------------G
  242. a score=694393.0
  243. s hg17.chr14 98710240 325 + 106368585 TTAGCTCCTCTCGGCCTGCTCGATTTTGACGTCGTTAGTCAGCAAGTGCTCGCCGTGCCACTTTTTCATGTGTTTCTCCAGGGTGCTGTAGACGCTGAAGGGCATCTGGCAGATGTCGCAGCGGTACACCTCCTTGCCGATCTGCCCGTGCGTCTTCATGTGGCGCGTGAGCTTGCTGCTCTGCGCGCACGCGTAGTTGCACAGCTCGCACTTGTAAGGCCGCTCGCCGGTGTGGCTCCGCCGGTGCACCGTCAAGTTGCTGCAGTTCTTGAACACCTTGCCGCAGTACTCGCACGTGTCGCTGCGGCGGCCCTCCTTGGAGCTg
  244. s panTro1.chr15 99208107 324 + 106954593 TTAGCTCCTCTCGGCCTGCTCGATTTTGACGTCGTTAGTCAGCAAGTGCTCGCCGTGCCACTTTTTCATGTGTTTCTCCAGGGTGCTGTAGACGCTGAAGGGCATCTGGCAGATGTCGCAGCGGTACACCTCCTTGCCGATCTGCCCGTGCGTCTTCATGTGGCGCGTGAGCTTGCTGCTCTGCGCGCACGCGTAGTTGCACAGCTCGCACTTGTA-GGCCGCTCGCCGGTGTGGCTCCGCCGGTGCACCGTCAAGTTGCTGCAGTTCTTGAACACCTTGCCGCAGTACTCGCACGTGTCGCTGCGGCGGCCCTCCTTGGAGCTg
  245. s mm5.chr12 102664235 325 + 115071072 TTAGCTCCTCTCAGCCTGCTCGATTTTGACATCATTAGTCAGCAAGTGTTCACCGTGCCACTTTTTCATGTGTTTCTCCAGGGTGCTGTAGACGCTGAAGGGCATCTGGCAGATGTCGCAGCGGTACACCTCCTTGCCGATCTGCCCGTGCGTCTTCATGTGGCGCGTGAGCTTGCTGCTCTGCGCGCACGCGTAGTTGCACAGCTCGCACTTGTAAGGCCGCTCGCCGGTGTGGCTCCTCCGGTGCACCGTCAGGTTGCTACAGTTCTTGAAGACCTTGCCGCAGTACTCACATGTGTCGCTGCGGCGGCCCTCCTTGGAGCTC
  246. s rn3.chr6 132299612 325 + 147642806 TTAGCTCCTCTCAGCCTGCTCGATTTTGACATCATTAGTCAGCAAGTGTTCACCGTGCCACTTTTTCATGTGTTTCTCCAGGGTACTGTAGACACTGAAGGGCATCTGGCAGATATCGCAGCGGTACACCTCCTTGCCGATCTGACCGTGCGTCTTCATGTGGCGCGTAAGCTTGCTGCTCTGCGCGCACGCGTAGTTGCACAGCTCGCACTTGTAAGGCCGCTCGCCGGTGTGGCTCCTCCGGTGCACCGTCAGGTTGCTACAGTTTTTGAAGACCTTGCCGCAGTACTCGCACGTGTCGCTGCGGCGGCCCTCCTTGGAGCTC
  247. s canFam1.chr8 70559093 325 + 77374719 TTAGCTCCTCTCGGCCTGCTCGATTTTGACGTCGTTAGTCAGCAAGTGCTCGCCGTGCCACTTTTTCATGTGTTTCTCCAGGGTGCTGTAGACGCTGAAGGGCATCTGGCAGATGTCGCAGCGGTACACCTCCTTGCCGATCTGCCCGTGCGTCTTCATGTGGCGCGTGAGCTTGCTGCTCTGCGCGCACGCGTAGTTGCACAGCTCGCACTTGTAAGGCCGCTCGCCGGTGTGGCTCCGCCGGTGCACCGTCAGGTTGCTGCAGTTCTTGAACACCTTGCCGCAGTACTCGCACGTGTCGCTGCGCCGGCCCTCCTTGGAGCTc
  248. s galGal2.chr5 44593849 325 + 56310377 TTAGCTTCTTTCTGCCTGCTCAATTTTGACGTCATTTGTCAGCAAATGTTCTCCATGCCACTTTTTCATGTGTTTCTCCAGGGTGCTGTAAACACTGAAGGGCATCTGGCAAATGTCGCAGCGGTAGACCTCCTTCCCTATCTGGCCATGCGTTTTCATGTGACGCGTCAGCTTACTGCTCTGGGCACATGCATAGTTGCAGAGCTCGCATTTGTAAGGCCGCTCTCCAGTGTGGCTCCGACGGTGCACCGTCAAATTGCTGCAGTTCTTAAAGACCTTGCCACAGTACTCACATGTATCGCTCCTGCGCCCTTCCTTCGAGCTG
  249. s fr1.chrUn 275909939 325 + 349519338 TTACACCGTCTCTGCTTGTTCCAGTTTGATGTCATTGGTCATCAAATGTTCTCCATGCCACTTTTTCATGTGTTTCTCCAGAGTGCTGTACACACTGAAAGGCATTTGGCAAATGTCACAACGAAAGACCTCCTTACCAAGCTGGCCATGCGTCTTCATGTGGCGCGTTAGCTTTGAGCTCTGGGCACACGCGTAGTTGCACAGCTCACACTTGTAGGGCCTCTCACCCGTGTGACTGCGTCGGTGCACTGTCAGGTTGCTGCAGTTTTTAAAAACTTTGCCACAGAACTCACAGGTGTCAGACCGCCGGCTGTCCTTTGAGCTG
  250. s danRer1.chrUn 103629515 325 + 367113659 TTAGCTTCTCTCTGCTTGTTCAATTTTGACCTCATTCGTCATCAAATGTTCCCCATGCCACTTTTTCATGTGTTTCTCAAGCGTGCTGTAGACGCTGAAGGGCATTTGGCAAATGTCACAGCGGTACACTTCCTTACCGAGCTGGCCGTGTGTCTTCATGTGGCGGGTGAGCTTGCTGCTCTGGGCGCAGGCGTAGTTACAAAGCTCACACTTGTAGGGCCTCTCGCCTGTGTGGCTGCGTCTGTGCACTGTCAGATTGCTACAGTTCTTGAACACCTTCCCACAGTACTCACAGGTGTCACTCCTCCGGCTCTCTTTCGAGCTA
  251. a score=20235.0
  252. s hg17.chr14 98710565 24 + 106368585 ggccgcccggggcccgggccgccc
  253. s panTro1.chr15 99208431 24 + 106954593 ggccgcccggggcccgggccgccc
  254. s mm5.chr12 102664560 24 + 115071072 GGCCTCCCAGGACCCGGACCACCC
  255. s rn3.chr6 132299937 24 + 147642806 GGCCGCCCAGGACCCGGGCCACCC
  256. s canFam1.chr8 70559418 24 + 77374719 ggccgcccggggcccgggccgccc
  257. a score=4011.0
  258. s hg17.chr14 98710589 2 + 106368585 AG
  259. s panTro1.chr15 99208455 2 + 106954593 AG
  260. s mm5.chr12 102664584 2 + 115071072 AG
  261. s rn3.chr6 132299961 2 + 147642806 AG
  262. s canFam1.chr8 70559442 2 + 77374719 AG
  263. s fr1.chrUn 275910285 2 + 349519338 AG
  264. s danRer1.chrUn 103629867 2 + 367113659 AG
  265. a score=517186.0
  266. s hg17.chr14 98710591 277 + 106368585 GTGCGGGGTGCTGCCTCCGCTGGCCGTGCCGCTGCGGCCCGAGAGGCCGCCGTCCAGCAGGTCCCCGGGCGGCGTGGAGAAGCGCAGGCTGCCGTTCTCGGACGAGTGCTCGGACGACGTGGCGAAGGGCGACTGTCGTGCGTCCGTGAAGCCCAGGAAGGGGTCCTTCATGAAGTGCCGCGACGCCGCGTAGCCCACCAGCCACTGCGAGTACACGTTCTCGGACGGGATGAGCGCGGCGGGCGGCAGCTCCAGGTCCTTCTCCACCTTGATGCGC
  267. s panTro1.chr15 99208457 277 + 106954593 GTGCGGGGTGCTGCCCCCGCTGGCCGTGCCGCTGCGGCCCGAGAGGCCGCCGTCCAGCAGGTCCCCGGGCGGCGTGGAGAAGCGCAGGCTGCCGTTCTCGGACGAGTGCTCGGACGACGTGGCGAAGGGCGACTGTCGTGCGTCCGTGAAGCCCAGGAAGGGGTCCTTCATGAAGTGCCGCGACGCCGCGTAGCCCACCAGCCACTGCGAGTACACGTTCTCGGACGGGATGAGCGCGGCGGGCGGCAGCTCCAGGTCCTTCTCCACCTTGATGCGC
  268. s mm5.chr12 102664586 277 + 115071072 GTGAGGTGTGCTGCCCCCGCTCGCCGTGCCACTGCGCCCGGACAGCCCGCCGTCCAGCAGGTCCCCGGGTGGCGTTGAGAAGCGCAGGCTGCCGTTCTCAGAGGAATGTTCCGACGATGTGGCGAAAGGCGACTGGCGCGCATCCGTGAAGCCCAGGAATGGGTCCTTCATGAAGTGGCGCGATGCTGCGTAGCCCACGAGCCACTGCGAGTACACGTTCTCAGATGGGATGAGGGCGGCAGGTGGCAGCTCCAGGTCTTTCTCCACCTTGATGCGC
  269. s rn3.chr6 132299963 277 + 147642806 GTGAGGCGTGCTGCCCCCGCTCGCCGTGCCACTGCGCCCCGACAGCCCGCCGTCCAGCAGGTCCCCGGGTGGCGTGGAGAAGCGCAGGCTGCCGTTCTCAGAGGAATGTTCCGACGACGTGGCGAAAGGCGACTGGCGCGCATCCGTGAAGCCCAGGAACGGGTCCTTCATGAAGTGGCGCGACGCCGCGTAGCCCACGAGCCACTGCGAGTACACGTTCTCGGATGGGATGAGGGCGGCGGGTGGCAGCTCCAGGTCCTTCTCCACCTTGATGCGC
  270. s canFam1.chr8 70559444 277 + 77374719 GTGCGGCGTGCTGCCCCCGCTGGCCGTGCCGCTGCGGCCCGACAGCCCGCCGTCCAGCAGGTCCCCGGGCGGCGTGGAGAAGCGCAGGCTGCCGTTCTCGGACGAGTGCTCGGACGACGTGGCGAAGGGCGACTGGCGCGCGTCCGTGAAGCCCAGGAACGGGTCCTTCATGAAGTGCCGCGACGCGGCGTAGCCCACGAGCCACTGCGAGTACACGTTCTCGGACGGGATGAGCGCGGCGGGCGGCAGCTCCAGGTCCTTCTCCACCTTGATGCGC
  271. s galGal2.chr5 44594200 277 + 56310377 GTGGGGGGTGCTGCCTCCGGAGGCCGTGCCGCTGCGCCCTGAGAGCCCCCCATCCAGCATGTCCCCCGGCGGGGTGGAGAAACGCAGGCTCCCATTCTCCGACGAATGCTCGGAAGAGGTGGCGAAGGGAGATTGTCGGGAGTCTGTGAATCCTAGAAACGGATCCTTCATGAAGTGCCTTGATGCCGCGTACCCTACCAGCCACTGGGAGTAAACATTTTCGGAAGGTATTATTGTTGCTGGTGGCAAGTCCAAATCTTTCTCAACTTTTATTCGT
  272. s fr1.chrUn 275910287 277 + 349519338 GTGAGGCGTGCTGCCTCCACTTGCGGTCCCACTACGGCCCGACAAGCCACCGTCCATCAGGTCTCCTGGGGGCGTGGAGAAGCGCAGGCTTCCATTTTCAGAGGAGTGCTCCGATGAAGTGCCGAAGGGAGATTGTCTCGAGTCACTGAAGCCTAGAAAAGGGTCTTTTATGAAATGGCGAGAGGCAGCATAGCCCACTAACCACTGGGAGTAGACATTTTCAGAGGGTATGAGGGGTGCCGGGGAACCATCCCCGTCCTTCTCTGTCTTTATCCTC
  273. s danRer1.chrUn 103629869 277 + 367113659 GTGCGGGGTGCTGCCTCCGCTAGCAGTACCACTGCGGCCGGAGAGGCCCCCGTCCAGCAGGTCCCCTGGCGGCGTAGAGAATCGCAAGCTTCCGTTCTCGGAGGAGTGTTCCGAGGAGGTGGCGAATGGAGATTGTCTGGAGTCGGTGAAGCCAAGGAAAGGATCTTTGATGAAGTGGCGGGATGCTGCATAGCCCACCAGCCACTGGGAGTAGACATTTTCAGATGGGATTAGGGGGGCTGGGGGTATGTCCAAATCCTTTTCAATTTTGATCCTC
  274. a score=56079.0
  275. s hg17.chr14 98710868 71 + 106368585 TTG------------GCGGCG---CTGTTGAGCCCGGGGCTGGGCAGCGGCGCGGGCTTGCGCGGGAAGAGCCCGGGGAAGGG---------------------------------------CTC
  276. s panTro1.chr15 99208734 71 + 106954593 TTG------------GCGGAG---CTGTTGAGCCCGGGGCTGGGCAGCGGCGCGGGCTTGCGCGGGAAGAGCCCGGGGAAGGG---------------------------------------CTC
  277. s mm5.chr12 102664863 83 + 115071072 TTGGCCGCGTGCAGCGCGGGA---CCACCGAGCCCAGGGCTGGGCAGCGGTGCTGGCTTGCGTGGGAAGAGAGCTGGAAAGGG---------------------------------------CTC
  278. s rn3.chr6 132300240 83 + 147642806 TTGGCCGCGTGTAGCGCAGGA---CCACCAAGCCCCGGGCTGGGCAGCGGTGCGGGCTTGCGTGGGAAGAGCGCTGGGAAGGG---------------------------------------CTC
  279. s canFam1.chr8 70559721 71 + 77374719 TTG------------GCCGCG---CTGTTGAGCCCGGGGCTGGGCAGCGGCGCCGGCTTGCGCGGGAACAGCCCCGGGAAGGG---------------------------------------CTC
  280. s galGal2.chr5 44594477 110 + 56310377 TTA------------GATGAG---TTATTTAAGCTGGGGCTTGTGATAGGTGTTGGCTTCCGAGGGAACAAGTTTGGGAAGGGCTCGCCTGGGCCAAAGTTTCTTCCATTGACTGTCCCCTCCTC
  281. s fr1.chrUn 275910564 85 + 349519338 TTACTC---------ATGGAG---TTAGCCAGGCCAGAACCAGCGACGGAAGCGGGTTTGTAGGGAAATAAGCTTGGAAGAGA----------------------------ATCATCCGATCCGC
  282. s danRer1.chr5 4282954 74 + 40038624 TTG------------GCGGAAGATCCAGAGAGGCTGGAGCTGGAAATGGGCATTGGCTTACGATGGAACATCGCAGAGATGGA---------------------------------------ATC
  283. a score=4995.0
  284. s hg17.chr14 98710939 5 + 106368585 GGTGC
  285. s panTro1.chr15 99208805 5 + 106954593 GGTGC
  286. s mm5.chr12 102664946 5 + 115071072 TGCGC
  287. s rn3.chr6 132300323 5 + 147642806 TGCGC
  288. s canFam1.chr8 70559792 5 + 77374719 GGCGC
  289. s galGal2.chr5 44594587 5 + 56310377 GGTGC
  290. s fr1.chrUn 275910649 5 + 349519338 TGTTC
  291. a score=9825.0
  292. s hg17.chr14 98710944 10 + 106368585 CTGGCGCGAA
  293. s panTro1.chr15 99208810 10 + 106954593 CTGGCGCGAA
  294. s mm5.chr12 102664951 10 + 115071072 CTGGCGCGAA
  295. s rn3.chr6 132300328 10 + 147642806 CTGGCGCGAA
  296. s canFam1.chr8 70559797 10 + 77374719 CCGGTGCGAA
  297. s fr1.chrUn 275910654 10 + 349519338 CTGCCATTAA
  298. a score=42070.0
  299. s hg17.chr14 98710954 72 + 106368585 Gccgcccccgcgcccgttgaccgcgccgcccgcgcccgcgtccccgcagccgcccgcgtcgtcgtcgtcgcc
  300. s panTro1.chr15 99208820 72 + 106954593 Gccgcccccgcgcccgttgaccgcgccgcccgcgcccgcgtccccgcagccgcccgcgtcgtcgtcgtcgcc
  301. s mm5.chr12 102664961 69 + 115071072 GGCCCCGCCGCGCCCGTTCACTGCACCCGGTGCACCCGCGTCCCCACAGCCAACAG---CTCCGGCATCACC
  302. s rn3.chr6 132300338 69 + 147642806 GGCCCCGCCACGCCCGTTCACTGCGCCCGGTGCACCTGCATCCCCGCAGCCACCAG---CTCCGGTGTCACC
  303. s canFam1.chr8 70559807 72 + 77374719 gccgccgccgcgcctgttgaccgcgccgccggtgcccgcgtccccgcagccgcccgcgtcgtcgtcgtcgcc
  304. a score=1846.0
  305. s hg17.chr14 98711026 19 + 106368585 cgcgtccccgccgcccgcc
  306. s panTro1.chr15 99208892 19 + 106954593 cgcgtccccgccgcccgcc
  307. s mm5.chr12 102665030 10 + 115071072 CGTGTCGC---------CT
  308. s rn3.chr6 132300407 10 + 147642806 CGCGTCGC---------CT
  309. s canFam1.chr10 63975552 18 + 72717409 AGTGTCCCTGTGGGCC-TC
  310. a score=1381.0
  311. s hg17.chr14 98711045 5 + 106368585 GCACG
  312. s panTro1.chr15 99208911 5 + 106954593 GCACG
  313. s mm5.chr12 102665040 5 + 115071072 GCACG
  314. s rn3.chr6 132300417 5 + 147642806 GCACG
  315. s canFam1.chr10 63975570 2 + 72717409 G---G
  316. s fr1.chrUn 86333360 5 + 349519338 GGATA
  317. a score=13475.0
  318. s hg17.chr14 98711050 19 + 106368585 CTTCAGGAAGGC-GCCGCGC
  319. s panTro1.chr15 99208916 19 + 106954593 CTTCAGGAAGGC-GCCGCGC
  320. s mm5.chr12 102665045 19 + 115071072 CTTCAGGAAGGC-GCCCCGC
  321. s rn3.chr6 132300422 19 + 147642806 CTTCAGGAAGGC-GCCTCGC
  322. s canFam1.chr10 63975572 20 + 72717409 CCTCGGCCAGGTGGCCGCGC
  323. s galGal2.chr5 44594680 19 + 56310377 TTTCATGAAGCT-ACTCCTC
  324. s fr1.chrUn 86333368 19 + 349519338 CCCGGTGAAGTC-GTGCTGC
  325. a score=43602.0
  326. s hg17.chr14 98711069 105 + 106368585 TTCTGCTTGTCGGCCAGGA---------------------GCTCGCCGTAC-TGCGGCAGTGCGCCTAGGCCCACGTTCTCCATGACCTTGCCCAGCACCAGCGCCTTCTCGTCAGCCAGCGCCTTg-
  327. s panTro1.chr15 99208935 105 + 106954593 TTCTGCTTGTCGGCCAGGA---------------------GCTCGCCGTAC-TGCGGCAGTGCGCCTAGGCCCACGTTCTCCATGACCTTGCCCAGCACCAGCGCCTTCTCGTCAGCCAGCGCCTTg-
  328. s mm5.chr12 102665064 87 + 115071072 TT---------------------------------------CTCCCCATAC-TGCGGCAGTGCGCCCAGCCCTGCGTCCTCCATCACCTTGCCCAGGGCCAGAGCCTTCTCATCCGCCAGAGCCGCA-
  329. s rn3.chr6 132300441 87 + 147642806 TT---------------------------------------CTCCCCATAC-TGCGGCAGTGCGCCCAGCCCTGCGTCCTCCATCACCTTGCCCAATGCCAGCGCCTTCTCATCTGCCAGAGCCGCA-
  330. s canFam1.chr10 63975592 92 + 72717409 TTATGCTTCTCGCCCAGGA---------CCTGGTGGAAGGCCTCGCTGAAG-TGCTGCATGGAGCTGAGCACCATGCCCTGCATGACCTCGGGCAGCG-------------------------CGCG-
  331. s galGal2.chr5 44594699 105 + 56310377 TTCTGTTTCTCAGCTAGCA---------------------TGTCATTGTAT-TGCTGGATGGCACCGAGACTTACATTCTCTATCACTTTTCCCAGGACAAGGGATTTCTCATCTGGCAGTGATTTG-
  332. s fr1.chrUn 86333387 120 + 349519338 TTCTCGTAGTGCTCCCGCAGACGTCTCAGCAGCGTGAAGGTCTTGTCGCACATGGTGCACTGCA--TGGGCCGGTG-----CATGAGCTTGTGCCGCTCGAACGCCGGCTCGTTGGCGAGGATCTTC-
  333. s danRer1.chrUn 103630787 106 + 367113659 TTCCGATTGTCAACTATTA---------------------AGTTATTGTAC-TGCTGGATGGAGCTGAGCCCTACATTTTCCACCATCTTTCCTAACGAAAGGGTCTTCTCATCTGAAGGAGGCTTTG
  334. a score=10567.0
  335. s hg17.chr14 98711174 32 + 106368585 gccgcgccgccccccgcgcccgggaccccggg
  336. s panTro1.chr15 99209040 32 + 106954593 gccgcgccgccccccgcgcccgggaccccggg
  337. s mm5.chr12 102665151 29 + 115071072 GCTG---CAGCCCCTGCGCCCGCCACCCCCGG
  338. s rn3.chr6 132300528 29 + 147642806 GCTG---CAGCCCCCGCGCCCGCCACCCCTGG
  339. s canFam1.chr10 63975684 26 + 72717409 GCCC--TCGTCGCCCACGCCCACCACCG----
  340. a score=4398.0
  341. s hg17.chr14 98711206 12 + 106368585 cACCCCAC---CACC
  342. s panTro1.chr15 99209072 12 + 106954593 cACCCCAC---CACC
  343. s mm5.chr12 102665180 12 + 115071072 TGGCACGC---CACC
  344. s rn3.chr6 132300557 12 + 147642806 TGGCACAC---CACC
  345. s canFam1.chr8 70560183 15 + 77374719 CACCCCGCCCACGCC
  346. a score=-114.0
  347. s hg17.chr14 98711217 1 + 106368585 C
  348. s fr1.chrUn 275910877 1 + 349519338 A
  349. a score=135397.0
  350. s hg17.chr14 98711218 72 + 106368585 GCCGTTCTCGCGGTTGCGGCTCAGCTCCGAGTCCATGCTGAAGCTCGACTCGGGCCGGCTCTCGTTCTCCAG
  351. s panTro1.chr15 99209084 72 + 106954593 GCCGTTCTCGCGGTTGCGGCTCAGCTCCGAGTCCATGCTGAAGCTCGACTCGGGCCGGCTCTCGTTCTCCAG
  352. s mm5.chr12 102665192 72 + 115071072 TCCGTTCTCGCGGCCACGGCCCAGCTCCGAGTCCATGCTGAAGCTCGACTCAGGCCGGCTCTCGTTCTCCAG
  353. s rn3.chr6 132300569 72 + 147642806 CCCATTCTCGCGGCCACGGCCCAGCTCCGAGTCCATGCTGAAGCTCGACTCAGGTCGGCTTTCATTCTCCAG
  354. s canFam1.chr8 70560198 72 + 77374719 GCCGTTCTCGCGGTTGCGGCTCAGCTCCGAGTCCATGCTGAAGCTCGACTCGGGCCGGCTCTCGTTCTCCAG
  355. s galGal2.chr5 44594806 72 + 56310377 GCCGTTTTCTCGGTTACGACTCAGCTCTGAGTCCATACTAAAGCTTGACTCTGGCCTGCTCTCATTTTCCAA
  356. s fr1.chrUn 275910878 72 + 349519338 GCCGTTCTCCCTGTTCCGGTATAATTCGGACTCCATGCTAAAGTTTGATTCTGGTCGACTCTCACTCTCTAG
  357. s danRer1.chrUn 103630894 72 + 367113659 GCCATTTTCCCTATTCCGACAGAACTCAGAGTCCATGCTGAAGTTTGACTCAGGCCTGCTTTCATTTTCCAA
  358. a score=501.0
  359. s hg17.chr14 98711290 1 + 106368585 T
  360. s panTro1.chr15 99209156 1 + 106954593 T
  361. s mm5.chr12 102665264 1 + 115071072 C
  362. s rn3.chr6 132300641 1 + 147642806 C
  363. s canFam1.chr8 70560270 1 + 77374719 C
  364. s galGal2.chr5 44594878 1 + 56310377 C
  365. s fr1.chrUn 275910950 1 + 349519338 t
  366. a score=295.0
  367. s hg17.chr14 98711291 1 + 106368585 A
  368. s panTro1.chr15 99209157 1 + 106954593 A
  369. s mm5.chr12 102665265 1 + 115071072 A
  370. s rn3.chr6 132300642 1 + 147642806 A
  371. s canFam1.chr8 70560271 1 + 77374719 A
  372. s galGal2.chr5 44594879 1 + 56310377 t
  373. a score=33922.0
  374. s hg17.chr14 98711292 47 + 106368585 GCAGctcctcctcctcctcctcctcctcctcgtcctcctcctccGGC
  375. s panTro1.chr15 99209158 47 + 106954593 GCAGctcctcctcctcctcctcctcctcctcgtcctcctcctccGGC
  376. s mm5.chr12 102665266 44 + 115071072 GCAGCTCCTCTTCTTCCTCCTCCTCGTCCTCG---TCGTCCTCAGGC
  377. s rn3.chr6 132300643 44 + 147642806 GCAGCTCTTCTTCTTCCTCCTCCTCGTCCTCG---TCGTCCTCAGGC
  378. s canFam1.chr8 70560272 47 + 77374719 GCAGctcctcctcctcctcctcctcctcctcgtcgtcctcctcGGGC
  379. a score=21186.0
  380. s hg17.chr14 98711339 20 + 106368585 TCGTGGCCCAGCGACGGGTC
  381. s panTro1.chr15 99209205 20 + 106954593 TCGTGGCCCAGCGACGGGTC
  382. s mm5.chr12 102665310 20 + 115071072 TCGGGGCCCAGAGATGGGTC
  383. s rn3.chr6 132300687 20 + 147642806 TCGGGTCCCAGAGATGGGTC
  384. s canFam1.chr8 70560319 20 + 77374719 TCGTGGCCCAGCGACGGGTC
  385. s galGal2.chr5 44594918 20 + 56310377 TCATGGCCCAGGGAGGGATC
  386. a score=13223.0
  387. s hg17.chr14 98711359 13 + 106368585 GCTCTCGTGGTGG
  388. s panTro1.chr15 99209225 13 + 106954593 GCTCTCGTGGTGG
  389. s mm5.chr12 102665330 13 + 115071072 GCTCTCATGGTGG
  390. s rn3.chr6 132300707 13 + 147642806 GCTCTCATGGTGG
  391. s canFam1.chr8 70560339 13 + 77374719 GCTCTCGTGGTGG
  392. s galGal2.chr5 44594938 10 + 56310377 GCTCTCA---TTC
  393. s danRer1.chrUn 103631014 13 + 367113659 GCCCTCGCCTTTG
  394. a score=0.0
  395. s hg17.chr14 98711372 3 + 106368585 CGG
  396. a score=4230.0
  397. s hg17.chr14 98711372 3 + 106368585 CGG
  398. s panTro1.chr15 99209238 3 + 106954593 CGG
  399. s mm5.chr12 102665343 3 + 115071072 CGG
  400. s rn3.chr6 132300720 3 + 147642806 CGG
  401. s canFam1.chr8 70560352 3 + 77374719 CGG
  402. s galGal2.chr5 44594948 3 + 56310377 CTG
  403. s fr1.chrUn 275910990 3 + 349519338 TGG
  404. a score=1089095.0
  405. s hg17.chr14 98711375 631 + 106368585 AAGTCACCGTCGGCCGCCTTGAGGCCCTCGCCCGCCAGCTCGCTGGTGCCGGGCTCGGGGGAGCTGGCGGCCGAGAGCCCGTCGTCGGAGCGGCCGGCCAGCGAGCCGGCCTTGTGCATGTGCGTCTTCATGTGGCGCTTGAGCTTGCTGGCCTGCGAGCACGCGTGGTCGCACAGCTGGCACTTGTAGGGCTTCTCGCCCGTGTGACTGCGCCGGTGCACGATGAGATTGCTCTGGAACTTGAAGGTCTTGCCGCAGAACTCGCACGACTTGCTCTTGGCTGGCGGCTGCGGGGGCGGCGTGCCGCCAGGGGGCATGGGCGGCAGCGGCGGCGTGCTCAGGAACGGGGACTTGGGGCTGGGCTGGAA------GGGGTTCAGGAGCCGGTGCATAGGGTTGCCGCGGCCCGGGGACACGGGCGGCGGCG---TGGAGCTGTTGCCCGCCAGCTCGCGGAGCCGCCGCGAGAAGTCCATGGCGGGCGAGTCGATGGCCATGGGGTTCAGGCGCATGACTCGGTCGAAGGCACTGGGGTGCTGGGCGACGAGCCCCATCTCCTCGGCACTGAGGCG---------GTGCGGGTCCAGGTGGTGGCGCGGCGGGGGACTGAAGAGAGGCGGCGTGCCCGGCAGGCGGCCCT
  406. s panTro1.chr15 99209241 631 + 106954593 AAGTCGCCGTCGGCCGCCTTGAGGCCCTCGCCCGCCAGCTCGCTGGTGCCGGGCTCGGGGGAGCTGGCGGCCGAGAGCCCGTCGTCGGAGCGGCCGGCCAGCGAGCCGGCCTTGTGCATGTGCGTCTTCATGTGGCGCTTGAGCTTGCTGGCCTGCGAGCACGCGTGGTCGCACAGCTGGCACTTGTAGGGCTTCTCGCCCGTGTGACTGCGCCGGTGCACGATGAGATTGCTCTGGAACTTGAAGGTCTTGCCGCAGAACTCGCACGACTTGCTCTTGGCCGGCGGCTGCGGGGGCGGCGTGCCGCCAGGGGGCATGGGCGGCAGCGGCGGCGTGCTCAGGAACGGGGACTTGGGGCTGGGCTGGAA------GGGGTTCAGGAGCCGGTGCATAGGGTTGCCGCGGCCCGGGGACACGGGCGGCGGCG---TGGAGCTGTTGCCCGCCAGCTCGCGGAGCCGCCGCGAGAAGTCCATGGCGGGCGAGTCGATGGCCATGGGGTTCAGGCGCATGACTCGGTCGAAGGCACTGGGGTGCTGGGCGACGAGCCCCATCTCCTCGGCACTGAGGCG---------GTGCGGGTCCAGGTGGTGGCGCGGCGGGGGACTGAAGAGAGGCGGCGTGCCCGGCAGGCGGCCCT
  407. s mm5.chr12 102665346 625 + 115071072 AAGTCGCCATCGGCCGCTTTCAGG---TCACCTGGCAGCTCGCTGGTGCCCGGCTCAGGGGAGCTGGCAGCTGAGAGCCCGTCGTCTGAGCGGCCAGCCAGAGAGCCCGCCTTGTGCATGTGCGTCTTCATGTGGCGCTTGAGCTTGCTCGCCTGCGAGCACGCATGGTCGCACAGCTGGCACTTGTAGGGCTTCTCGCCCGTGTGGCTGCGCCGGTGCACGATGAGATTGCTCTGGAACTTGAAGGTCTTGCCGCAGAACTCACAGGACTTGCTCTTGGCAGGCGGCTGCGGTGGCGGTGTGCCCGCA---GGCATGGGTGGCAGCGGTGGCGTGCTGAGGAACGGGGACTTGGGACTGGGCTGGAA------AGGGTTCAGCAGCCGGTGCATAGGGTTGCCACGGCCTGGGGACACGGGCGGCGGCG---TGGAGCTGTTGCCGGCCAGTTCTCGCAGCCGCCGGGAGAAGTCCATGGCAGGAGAGTCTATGGCCATGGGGTTCAGGCGCATGACTCGGTCGAAGGCACTGGGGTGCTGGGCCACGAGCCCCATCTCCTCTGCACTGAGGCG---------GTGTGGGTCCAAGTGATGGCGTGGCGGTGGGCTGAAGAGCGGTGGCGTACCTGGCAAGCGGCCCT
  408. s rn3.chr6 132300723 625 + 147642806 AAGTCGCCATCGGCCGCTTTGAGG---TCACCTGGCAGCTCGCTGGTGCCGGGCTCTGGGGAGCTGGCGGCCGAGAGCCCATCGTCTGAGCGGCCAGCCAGCGAGCCCGCCTTGTGCATGTGCGTCTTCATGTGGCGCTTGAGCTTGCTCGCCTGCGAGCACGCGTGGTCGCACAGCTGGCACTTGTAGGGCTTCTCGCCCGTGTGGCTGCGCCGGTGCACGATGAGATTGCTCTGGAATTTGAAGGTCTTGCCGCAGAACTCACAGGACTTGCTCTTGGCAGGCGGCTGCGGTGGCGGCGTGCCCGTG---GGCATGGGTGGCAGCGGTGGCGTGCTGAGGAACGGGGACTTGGGGCTGGGCTGAAA------AGGGTTCAGCAGCCGGTGCATAGGGTTGCCACGGCCTGGGGACACGGGCGGCGGTG---TGGAGCTGTTACCGGCCAGTTCTCGCAGCCGCCGAGAGAAGTCCATGGCGGGAGAGTCTATGGCCATGGGGTTCAGGCGCATGACTCGGTCGAAGGCACTGGGGTGCTGGGCCACGAGCCCCATCTCCTCTGCACTGAGGCG---------GTGTGGGTCCAAGTGATGGCGTGGCGGTGGGCTGAAGAGCGGTGGCGTACCGGGCAGGCGGCCCT
  409. s canFam1.chr8 70560355 631 + 77374719 AAGTCGCCGTCGGCCGCCTTGAGGCCCTCGCCGGCCAGCTCGCTGGTGCCGGGCTCGGGGGAGCTGGCGGCCGAGAGCCCGTCGTCGGAGCGGCCGGCCAGCGAGCCGGCCTTGTGCATGTGCGTCTTCATGTGGCGCTTGAGCTTGCTCGCCTGCGAGCACGCGTGGTCGCACAGCTGGCACTTGTAGGGCTTCTCGCCCGTGTGGCTGCGCCGGTGCACGATGAGATTGCTCTGGAACTTGAAGGTCTTGCCGCAGAACTCGCACGACTTGCTCTTggcgggcggctgcggcggcggcgtgcccccggggggcATGGGCGGCAGCGGCGGCGTGCTCAGGAACGGGGACTTGGGGCTGGGCTGGAA------GGGGTTCAGGAGCCGGTGCATAGGGTTGCCGCGGCCCGGAGACACGGGCGGCGGCG---TGGAGCTGTTGCCCGCCAGCTCGCGGAGCCGCCGCGAGAAGTCCATGGCGGGCGAGTCGATGGCCATGGGGTTGAGGCGCATGACTCGGTCGAAGGCACTGGGGTGCTGGGCGACGAGCCCCATCTCCTCGGCACTGAGGCG---------GTGCGGGTCCAGGTGGTGGCGCGGCGGCGGGCTGAAGAGCGGCGGCGTGCCGGGCAGGCGGCCCT
  410. s galGal2.chr5 44594951 631 + 56310377 AAGTCTGTCTCACTGGATTTCAGTCCCTCTCCAGTGAGCTCGCTCGTGCCTGGCTCAGGAGAACTCGTGGTGGACAGTCCATCGTCTGACCTGCCTGTCATGGAGCCAGCTTTATGCATATGCGTTTTCATGTGACGCTTTAGCTTGCTGGCCTGGGAGCAAGCATGGTCACATAGCTGACATTTGTAGGGCTTTTCTCCTGTGTGACTACGCCGGTGGACGATAAGGTTGCTCTGGAACTTGAAGGTTTTCCCACAGAATTCGCAGGACTTACTCTTGGCCTGAGGCTGGGGAGGCGTAGTGCTGCTTGGGGGCATGGGGGGCAGTGGTGGGGTGCTCAAAAAAGGTGATTTAGGACTCGGCTGGAA------AGGATTCAACAGGCGATGCATAGGGTTGGTGCGACTGGGCGAGACTGGCGGAGGGG---TGGAACTGTTTCCTGCCAGCTCTCGAAGCCTTCTGGAGAAATCCATCGCTGGGGACTCAATTGCCATGGGGTTTAAACGCATAACTCTGTCAAAGGCACTGGGATGCTGGGCAACTAACCCCATTTCTTCGGCACTAAGGCG---------ATGTGGATCCAGATGATGACGAGGTGGTGGGCTGAATAGTGGAGGCGTGTTTGGGAGCCGACCCT
  411. s fr1.chrUn 275910993 637 + 349519338 AAGTCACCACCGTGGTTCTTCATGC------------GCTCACTTGTGCCTGGCTCCGGGGAACTTGTAGTTGATAGTCCATCATCCGAACGCCCAGTCAGTGAACCAGGCTTGTGCATGTGGGTCTTCATGTGGCGTTTCAGCTTACTCGCCTGAGAACATGCATGGTCACACAGCTGGCACTTGTAGGGTTTCTCTCCGGTGTGGCTTCGGCGATGCACAACCAAGTTGCTTTGGAACTTAAATGTCTTACCACAGAACTCACAGGATTTGACTTTGTTCTGCATCTGTGGAGGGCTAGTGCTGTTTGCGGGAGCCGGTGGTAAGGGAGGAGTGCACACAAAGGGTGACTTTGGCCCAATTTGAAAGGTGTTGGGGTTGAGTAATCGGTGAATATGGTTGGCCCTGCCTGGCGACAGCGGCGGTGTTGTACTGTTGCTATTACCCGCCAATTCACGTAACCTCCTGGAGAAGTCCATGGAGTGGGACTCCATGGACACGGGCGCGAGACGCATCACCTTTTCAAAGGCACTTGGGTGCTGTGAGATGAGACCCATTTCTTCTGTGCTAAGGCATTCTAGCCTATGGGAGTCCAGGTGGTGGCGGGCAGGGGGGCTAACAAATGCAGGCATGTTGGGCAGTCGGTTCT
  412. s danRer1.chrUn 103631027 646 + 367113659 AAATCACCATCCCGATTTTTTATACCCTCCCCAGTGACGTCACTAGTGCCTGGCTCAGGTGAGCTGGTGGTGGACAGGCCATCGTCAGAGCGCCCTGTCATGGAACCAGATTTGTGCATGTGGGTCTTCATGTGGCGTTTTAATTTGCTCGCTTGAGAACAAGCGTGGTCACACAATTGGCACTTGTAAGGTTTCTCGCCTGTGTGGCTTCGCCGATGAACAACCAGATTACTCTGAAACTTGAAGGTCTTGCCACAGAACTCGCAAGATTTCGACTTGCCCTGTGTCTGTGGCGGGGTGGTGCTGTTAGGGGGCATGGGAGGCAGTGGAGGGGTGCTCAGAAAGGGTGATTTCGGGCTGGGCTGAAAGGGGTTGGGATTGAGAAGGCGATGCATAGGGTTAGCACGGCTCGGTGACAATGGTGGAGTGG---AATTGTTGTTTCCAGCAAGCTCTCTCAATCGGCGGGAGAAATCCATGGACTGGGACTCCATGGCCATGGGTGTCATGCGCATCACTCTTTCGAAGGCACTGGGATGCTGGGAGATTAAACCCATTTCCTCTGCGCTAAGGCGTTCCAGGCGATGGGGATCTAAATGATGGCGTGGAGGGGGGCTGACAAAGGGAGGCGTATTGGGGATACGGTTTT
  413. a score=309091.0
  414. s hg17.chr14 98712006 203 + 106368585 CGCCGAAGCCC---G-GGTGGTCCCGCAGG--ATGGGGCCCGTCATGCGCAGCAGGTTGAAGGGGTTGCTG---TCGCCCAGGAAATTCATGAGCGGGGACTGCGCCACGGCCTCCGGCCCGAGCGGCGGCGGGATGGTGAGCCGCGGCGTGAGCGAGCTGCTGGCCGGCCCGGGCTCCAGGTAGATGCGGAAGCCGTGCGTGTTCTGCGCG
  415. s panTro1.chr15 99209872 203 + 106954593 CGCCGAAGCCC---G-GGTGGTCCCGCAGG--ATGGGGCCCGTCATGCGCAGCAGGTTGAAGGGGTTGCTG---TCGCCCAGGAAATTCATGAGCGGGGACTGCGCCACGGCCTCCGGCCCGAGCGGCGGCGGGATGGTGAGCCGCGGCGTGAGCGAGCTGCTGGCCGGCCCGGGCTCCAGGTAGATGCGGAAGCCGTGCGTGTTCTGCGCG
  416. s mm5.chr12 102665971 203 + 115071072 CACCGAAGCCA---G-GGTGGTCCCGCAGG--ATGGGGCCCGTCATGCGCAGCAGGTTGAAAGGATTGCTG---TCCCCCAGGAAATTCATGAGTGGGGACTGCGCCACGGTCTCCGGCCCGAGCGGTGGCGGGATGGTGAGCCTGGGCGTGAGCGAGGTGCTGGCCGGCCCAGGCTCCAGGTAGATTCGGAAGCCATGTGTGTTCTGTGCG
  417. s rn3.chr6 132301348 203 + 147642806 CTCCGAAGCCG---G-GGTGGTCCCGCAGG--ATGGGGCCCGTCATGCGCAGCAGGTTGAAAGGATTGCTG---TCCCCGAGGAAATTCATGAGTGGGGACTGCGCCACGGCCTCCGGCCCGAGCGGCGGCGGGATGGTGAGCCTGGGCGTGAGCGAGGTGCTGGCGGGCCCGGGCTCCAGGTAGATGCGGAAGCCATGCGTGTTCTGCGCA
  418. s canFam1.chr8 70560986 203 + 77374719 CGCCGAAGCCC---G-GGTGGTCCCGCAGG--ATGGGGCCCGTCATGCGCAGCAGGTTGAAGGGGTTGCTG---TCGCCCAGGAAATTCATGAGCGGGGACTGGGCCACGGCCTCGGGTCCCAGCGGCGGCGGGATGGTGAGCCGCGGCGTGAGCGAGCTGCTGGCCGGCCCGGGCTCCAGGTAGATGCGGAAGCCGTGCGTGTTCTGCGCG
  419. s galGal2.chr5 44595582 203 + 56310377 CACCAAAGCCA---G-GATGTTCACGCAAA--ATGGGTCCTGTCATCCGCAGAAGATTAAAAGGGTTGTTG---TCTCCAAGGAAATTCATCAGCGGGGACTGTGCAACAGTCTCTGGTCCCAGAGGAGGAGGGATGGTGATGCGTGGAGTAAGGGAACTGTTGGAAGGGCTTGTTTCCAGGTAGATGCGGAATCCATGTGTGTTCTGGGCA
  420. s fr1.chrUn 275911630 206 + 349519338 CGATAAAAGCA---GAGGCGGGCTCTCGAGTCACTGGGCCTGTCATTCTTAAGAGCTGGAAAGGGTTGTTT---TCCCCCAGAAAGTTGATGAGGGGGGGATGAGGGATGCAGTCATTGCCCATGGGTGGAGGCATGGTGATGCGTGGAGTTAGGGCTGCGCTCGAGGGATCTGACTCCAGGTATATGCGAATGCCATGCGTGTTTTGAGCA
  421. s danRer1.chr5 4283993 209 + 40038624 CGATGTAGCCATGCG-GCGGTTCTCGTAGC--AGTGGGGCACCCATACGCAACAGCTGGAAAGGGTTGCTGCCATCACCCAGAAAGCTGGCAAGTGGGGAACGAGGCAAGGCATCAGCCCCCAGTGGTGGAGGAAGAGCCATGCGAGGGGTAAGAGAGCAGCTAGTAGGGTGGGTGTCCAGGTAGATGCGTATCCCATGGGTGTTCTGTGCA
  422. a score=170742.0
  423. s hg17.chr14 98712209 76 + 106368585 TGCTGCAGCAGGAACCACGCGCTGTTGAAGGGCTGCTTGCATGTTGTGCAAATGTAGCTGGAAGGCTCATCTTT---AC
  424. s panTro1.chr15 99210075 76 + 106954593 TGCTGCAGCAGGAACCACGCGCTGTTGAAGGGCTGCTTGCATGTTGTGCAAATGTAGCTGGAAGGCTCATCTTT---AC
  425. s mm5.chr12 102666174 76 + 115071072 TGCTGCAGCAGGAACCAGGCGCTGTTGAAGGGCTGCTTGCATGTTGTGCAAATGTAGCTGGAAGGCTCATCTTT---AC
  426. s rn3.chr6 132301551 76 + 147642806 TGTTGCAGCAGGAACCAGGCGCTGTTGAAGGGCTGCTTACATGTTGTGCAAATGTAGCTGGAAGGCTCATCTTT---AC
  427. s canFam1.chr8 70561189 76 + 77374719 TGCTGCAGCAGGAACCACGCGCTGTTGAAGGGCTGCTTGCATGTTGTGCAAATGTAGCTGGAAGGCTCATCTTT---AC
  428. s galGal2.chr5 44595785 76 + 56310377 TGCTGAAGCAAGAACCAAGCGCTATTAAAAGGCTGCTTGCATGTTGTGCAAATATAGCTTGAAGGCTCATCTTT---AC
  429. s fr1.chrUn 275911836 79 + 349519338 TGCTGTAGCAGGAACCAGGCATTGGAAAACATCTGCTTACACGTGGTGCAGATATAACTGGAGGGCTCATCCCTCTGAC
  430. s danRer1.chrUn 103631683 76 + 367113659 TGCTGCAGAAGGAACCAGGCGTTGTAAAAGGGTTGTTTGCACGTTGTGCATATGTAACTTGAGGGTTCATCTCT---AC
  431. a score=412979.0
  432. s hg17.chr15 41486872 188 + 100338915 TTAGTGAGAAACATAATCGTGTTTATATTTTGGATGCTGCTTGAATCCAATTCTCTCCCCAACAATGAGGCACTGGATCACCCACTCTTGTGACACCACAGGCAGCTGCAATGCTTCAGCACACTTCAGCACCGAGGCTGGGCATGAGGGGTCCGTCACCACCACATCAAATACCCCTAAAGCAATAT
  433. s panTro1.chr16 41478602 188 + 101535987 TTAGTGAGAAACATAATCGTGTTTATATTTTGGATGCTGCTTGAATCCAATTCTCTCCCCAACAATGAGGCACTGGATCACCCACTCTTGTGACACCACAGGCAGCTGCAATGCTTCAGCACACTTCAGCACCGAGGCTGGGCATGAGGGGTCCGTCACCACCACATCAAATACCCCCAAAGCAATAT
  434. s mm5.chr2 120979995 188 + 181686250 TTAGTGAGAAACATAATCATGTTTATATTTTGGATGCTGCTTGAATCCAATTCTCTCCCCAACAATGAGGCACTGGATCACCCATTCTTGTGATACCACAGGCAGTTGCAAGGCTTCAGCACACTTGAGCACCGAGGCTGGGCATGAGGGGTCTGTCACCACCACATCAAATACCCCTAAAGCAATGT
  435. s rn3.chr3 107897216 188 + 170969371 TTAGTGAGAAACATAATCATGTTTGTATTTTGGATGCTGCTGGAATCCAATTCTCTCCCCAACAATGAGGCACTGGATCACCCATTCTTGTGATACCACAGGCAGCTGCAAGGCTTCAGCACACTTGAGCACCGAGGCTGGGCATGAGGGGTCTGTCACCACCACATCAAATACCCCTAAAGCAATGT
  436. s canFam1.chr30 13173383 188 + 43165425 TTAGTGAGAAACATAATCATGTTTGTATTTTGGATGCTGCTTGAATCCAATTCTCTCCCCAACAATGAGGCACTGGATCACCCACTCTTGTGACACCACAGGCAGCTGCAATGCTTCAGCACACTTCAGCACCGAGGCTGGGCATGAGGGATCCGTCACCACCACGTCAAATACCCCTAAAGCAATAT
  437. s galGal2.chr10 80159 188 - 20909726 TTAACGAGGGACATAGTCATGTTTGTATTTTGGATGCTTGTTGTAGCCTACTCTCTCTCCAGCAATAAGGCTCTGGATCACCCACTCTTGTGAGACAACAGGCAACCTTAATGCTTCTGCGCACTTCAAGACAACAGCTGGGCAGGAAAGATCAGTCACCACCACATCATAAACACCCAATGCAATAT
  438. s fr1.chrUn 325491827 188 - 349519338 GGATTATGACGCGTAGTTGTGGCGATACCGAGGCAGGCTATGGAAACCCAGGCACTCCCCACAGATCACACTCTGGATGAGCCACTCGGGAGACACCAGCGGCACTTCCTGTGATGCCATGTTCTTCTCCACTAGTGGGGAGCAGGTGTGGTCCGTCACCACAACGTCAAACTTGCCGGCAGGAATGT
  439. s danRer1.chrUn 117181337 182 - 367113659 TTACGTAGATGT---GTTGTGGCAGAATTCAGAATTGCTGTCGAAGTTGAGGCACTTTCCACAGATCAAGCTCTGAATCAGCCACTCCAGAGAGACAACAGGCATGTTTGAGGCC---ACACGCTTCACTTCCTTTGATGTACATGCTGATGATGTCACTGCCACATCAAACTTCACATCTGGAATGT
  440. a score=145507.0
  441. s hg17.chr15 41673708 149 + 100338915 ATGGCTGGTCCCTTCTCCCGTCTGCTGTCCGCCCGCCCGGGACTCAGGCTCCTGGCTTTGGCCGGAGCGGGGTCTCTAGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGAGCTGCC---AGTGAACGACGGAGGCTGTATCCCCCGAG
  442. s panTro1.chr16_random 12462177 149 + 32210112 ATGGGTGGTCCCTTCTCCCGTCTGCTGTCCGCCCGCCCGGGACTCATGCTCCTGGCTTTGGCCGGAGCGGGGTCTCTAGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGAGCGGCC---AGTGAACGACGGAGGCTGTATCCCCCGAG
  443. s mm5.chr2 121140425 152 + 181686250 ATGGCTGGTCCCTTCTCCCGTCTGCTGTCTGCCCGCCCTGGACTCAGGCTCCTGGCTTTGGCTGGAGCTGGGTCTCTCACCGCCGGGATTCTGCTCCGCCCGGAATCTGTAGGAGCTGCCGCTGCTGAACGGAGGAGACTGTATCCCCCGAG
  444. s rn3.chr3 108059196 152 + 170969371 ATGGCTGGTCCCTTCTCCCGTCTGCTGTCTGCCCGCCCCGGACTCAAGCTCCTGGCTTTGGCTGGAGCTGGGTCTCTCGCCGCCGGGATTCTGCTCCGTCCGGAATCTGTACGAGCGGCCACCGGTGAACGGAGGAGACTGTATCCCCCGAG
  445. s canFam1.chr30 13349240 149 + 43165425 ATGGCTGGTCCCTTCTCTCGTCTGCTGTCCGCGCGCCCGGGGCTCAGGCTCCTAGCTTTGGCTGGAGCTGGGTCTCTAGCCGCTGGGTTTCTGCTCCGCCCGGAACCTGTAAGAGCCGCC---AGTGAACGACGGAGGCTGTATCCCCCAAG
  446. s galGal2.chrZ 28834466 152 + 33651169 ATGGCTGGCACCTTTGGTCGTCTCCTGGCTGGCCGTGTGACTGCTGCACTTTTTGCAGCAGCAGGCACAGGGGTACTCACCACTGGGTACCTCCTCAACCAGCAAAATGTGAAAGCTACTGTGCATGAGAAGCGGAAGCTCTTCCCTCCCAG
  447. s fr1.chrUn 97204237 143 - 349519338 ATGGCGAGTAGCTTCTCCAGGGTTCTGATCTCCAG---AAACATCCGGATCCTGTCGCTGTTGGG---GGGTTCGGTCACAGCCGGGATCCTGCTGCAGCGGCACCATGTCGGCGCCGAC---GGCCCCACACGGAGGAGGTACCCCGCCAG
  448. s danRer1.chr4 497203 149 - 30025136 ATGGCTGGTTCAATTGGCAAGATGATGTCGAGCCGCACCACTGGCCTGCTCATGGCAAGCCTCGGAGCTGGTGCTTTGGCGACCGGATATATGATGAGTGACAGTGCTGCAATCTCTGCG---GACGAGAAGAGGAAACTCTACCCTCCCAG
  449. a score=250959.0
  450. s hg17.chr15 41679161 89 + 100338915 TCATAGCAGGTGGCCAAGGAAGCTGATAGTCAATACCAGGGACCAGGAAGGTCGTGACCAGTCCTGGAGGCCCCAGGCTGTACTTCGAC
  451. s panTro1.chr16 41682794 89 + 101535987 TCATAGCAGGTGGCCAAGGAAGCTGATAGTCAATACCAGGGACCAGGAAGGTCGTGACCAGTCCTGGAGGCCCCAGGCTGTACTTCGAC
  452. s mm5.chr2 121145551 89 + 181686250 TCATAATAGGTGGCCAAAAATGCTGACGGGCAATGCCAGGGCCCAGGAGGCTTGGAACCAGTCGTAGAGACCCCAGGCTGAGTTTCGAC
  453. s rn3.chr3 108064239 89 + 170969371 TTATAATAGGTGGCCAAAAAAGCTGATGGTTAGTGTCAGAGCCCAGGAAGCATGGAACCAGTCACAGAGACCCCAGGCTGAGCTTCGAC
  454. s canFam1.chr30 13354361 89 + 43165425 TCATATCAGGTTGCCAAGGAAGCAGATGGTCAATGCCATGGCCCAGGAGGGTTGTGACCAGTCCTGAAGGCCCCAGGCTGTGCTTCGAC
  455. a score=50892.0
  456. s hg17.chr15 41826029 40 + 100338915 ATGCGCCTCCGCCGCCTAGCGCTGTTCCCGGGTGTGGCGC
  457. s panTro1.chr16 41735415 40 + 101535987 ATGCGCCTCCGCCGCCTAGCGCTGTTCCCGGGTGTGGCGC
  458. s mm5.chr2 121195614 40 + 181686250 ATGCGCTTCAGCTGCCTAGCTCTGCTCCCGGGCGTGGCGC
  459. s rn3.chr3 108117268 40 + 170969371 ATGCGCTTCAGCTGCCTTGCGCTGCTCCCGGGCGTGGCGT
  460. s canFam1.chr30 13397631 40 + 43165425 ATGCGCCCCCGCTGCCGAGCGCTGCTCCCGGGCGTGGCGC
  461. a score=11434.0
  462. s hg17.chr15 41826069 20 + 100338915 TGCTTCTTGCCGCG---------------GCCCGC
  463. s panTro1.chr16 41735455 20 + 101535987 TGCTTCTTGCCGCG---------------GCCCGC
  464. s mm5.chr2 121195654 20 + 181686250 TGCTGCTCGCCTCG---------------GCCCGT
  465. s rn3.chr3 108117308 35 + 170969371 TGCTGCTCGCCTCGGCCCTCCTCGCCTCCGCCCTC
  466. s canFam1.chr30 13397671 20 + 43165425 TGCTTTTCGCCGCG---------------GCCGGT
  467. s fr1.chrUn 97210657 23 - 349519338 TGCTTTTAGCAGCG------------CTCACCGGC
  468. a score=118454.0
  469. s hg17.chr15 41826089 107 + 100338915 CTCGC---CGCTGCCTCCGACGTGCTAGAACTCACGGACGACAACTTCGAGAGTCGCATCTCCGACACGGGCTCTGCGGGCCTCATGCTCGTCGAGTTCTTCGCCCCCTG
  470. s panTro1.chr16 41735475 107 + 101535987 CTCGC---CGCTGCCTCCGACGTGCTAGAACTCACGGACGACAACTTCGAGAGTCGCATCTCCGACACGGGCTCTGCGGGCCTCATGCTCGTCGAGTTCTTCGCCCCCTG
  471. s mm5.chr2 121195674 107 + 181686250 CTCGC---CGCCGCCTCCGATGTGTTGGAACTGACGGACGAAAACTTCGAGAGTCGCGTCTCCGACACGGGCTCGGCGGGGCTCATGCTAGTCGAGTTCTTCGCCCCCTG
  472. s rn3.chr3 108117343 107 + 170969371 CTCGC---CTCCGCCTCAGACGTGTTGGAACTGACGGACGAAAACTTCGAGAGTCGCGTCTCCGACACGGGCTCAGCTGGGCTCATGCTAGTCGAGTTCTTCGCCCCATG
  473. s canFam1.chr30 13397691 107 + 43165425 CTCGC---CTCTGCCTCCGACGTGCTGGAACTCACTGACGACAACTTCGAGAGTCGCATCTCCGACACGGGCTCTGCGGGCCTCATGCTCGTCGAGTTCTTCGCTCCCTG
  474. s fr1.chrUn 97210680 101 - 349519338 TTCACGCAGGCCGCCAGTGATGTGCTGGAGTTCACGGATAACGATTTCGAAAGTAAAATCGGAGACC---------ATGAAATTATTCTTGTGGAGTTTTTCGCACCCTG
  475. s danRer1.chr17 15314657 98 + 35757233 CTCGT---GGAGGGCAGCGATGTGCTGGAGCTCGGAGATTCTGACTTTGA---------CCGGAGCGCAGGCATGCATGACACTCTGCTAGTGGAGTTCTTCGCACCTTG
  476. a score=88002.0
  477. s hg17.chr16 142908 95 + 88827254 ATG----TCTCTGACCAAGACTGAGAGGACCATCATTGTGTCCATGTGGGCCAAGATCTCCACGCAGGCCGACACCATCGGCACCGAGACTCTGG-AGAG
  478. s panTro1.chr18 150233 95 + 83875239 ATG----TCTCTGACCAAGACTGAGGGGACCATCATTGTGTCCATGTGGGCCAAGATCTCCACGCAGGCCGACACCATCGGCACCGAGACTCTGG-AGAG
  479. s mm5.chr11 32172234 95 + 121648857 ATG----TCTCTGATGAAGAATGAGAGAGCTATCATCATGTCCATGTGGGAGAAGATGGCTGCTCAGGCCGAGCCCATTGGCACTGAGACTCTAG-AGAG
  480. s rn3.chr10 95139962 95 - 110733352 ATG----TCTCTGATGAAGAATGAGAGAGCTATCATCATGTCCATGTGGGACAAAATGGCGCCTCATGCAGAGCCCATTGGCACTGAGACTCTGG-AGAG
  481. s canFam1.chr6 37152261 96 - 79106041 ATG----TCTCTGACCAAGGCCGAGAGGACCATCATCCTGTCCATGTGGGGCAAGATCTCCACCCAGGCGGATGCTATTGGCACCGAGGCCCTGGAAGAG
  482. s galGal2.chr14 13958597 95 + 20603938 ATG----GCACTGACCCAAGCTGAGAAGGCTGCCGTGACCACCATCTGGGCAAAGGTGGCTACCCAGATTGAGTCCATTGGGCTGGAATCACTGG-AGAG
  483. s fr1.chrUn 269729641 95 + 349519338 ATG----AGTCTGAGCAGGACTGACAAGGAGGCCGTGAAGGCCATTTGGGCCAAAATGTCCAAGAGCATTGATGTCATCGGGGCCGAGGCGTTTG-GCAG
  484. s danRer1.chrFinished 33475840 95 - 40167097 ATGAGTCTCTCTGCCAAAGAC----AAAGCTGCCGTCAAAACCCTGTGGGCCAAGATCGCTGGAAAGGCTGACGACATCGGACACGATGCTCTCT-CCAG
  485. a score=39370.0
  486. s hg17.chr16 179963 35 + 88827254 TTACTTGTATTTCGCACTTCGGTCCCGGGAAGCCC-
  487. s panTro1.chr18 195782 35 + 83875239 TTACTTGTATTTCGCACTCCGGTCCCGGGAAGCCC-
  488. s mm5.chr17 68693958 35 - 93559791 TTACTTGTATTTTGTACTCCGGTCCCTGGAAGCCC-
  489. s rn3.chr10 95183773 35 - 110733352 TTACTTGTATTTTGTACTCCGGTCCCTGGAAGCCC-
  490. s canFam1.chr6 37185997 35 - 79106041 TTACTTGTATTTCGCACTCCGGTCCCTGGAAGCCC-
  491. s fr1.chrUn 145482403 32 + 349519338 TTACTTGTGTCTGGAGCCGTGCTC----GTGGCTGT
  492. a score=142911.0
  493. s hg17.chr16 179998 137 + 88827254 GACGATGTCCCCGGCTGTGGCTCCGGGAACGGCTGCGGTGGCGCCGATGTCTATCTCGGGACCGGGACCGGGACAATTTCCGTCGC---TCTCGGGAGGTAGATCTTGACCGCCTCCGACGCCGATCCCGGGAGCGTGAC
  494. s panTro1.chr18 195817 137 + 83875239 GACGATGTCCCCGGCTGTGGCTCCGGGAACGGCTGCGGTGGCGCCGATGTCTATCTCGGGACCGGGACCGGGACAATTTCCGTCGC---TCTCGGGAGGTAGATCTTGACCGCCTCCGACGCCGATCCCGGGAGCGTGAC
  495. s mm5.chr17 68693993 137 - 93559791 GGCGGTGACCCCGGCTGTGGCTCCGGGAACGGCTGCGATGGCGCCTGTATCTATCTCGGGATCTGGAACGGGAAAACTTCCGCCGC---TCTCTGGAGGTAGACCTAGACCGCCTCCGTCGACGATCCCGGGAGCGTGAC
  496. s rn3.chr10 95183808 137 - 110733352 GTCGGTGACCCCGGCTGTGGCTCCGGGAACGGCTGCGATGTCGCCGGTATCTATCTCGGGACCTGGAACGGGAAAACTTCCGCCGC---TCTCGGGAGGTAGACCTAGACCGCCTCCTTCGACGATCCCGGGAACGTGAC
  497. s canFam1.chr6 37186032 137 - 79106041 GGCGGTGGCCCCGGCTGTGGCTCCGGGAACGGCTGCGGTGGCGCCGGTGTCTGTCTCGGGACCGGGACCGGGATGACTTTCGTCGC---TCCCTGGAGGTAGATCTGGACCTCCTCCGACGCCGGTCCCGGGAGCGTGAC
  498. s galGal2.chr1 142364883 137 - 188239860 GGCTGCGACTCCGGCTGCGGCTGTTGGAGCGAGACCTGTGGCGATGGCGTTTCTCACGGGATTTAGAGCGAGTTCTTCTTTTCCGT---TCCCTGGAGGCTGAGCGAGAGCGATGTCTGCGACGATCTCGGGACCTAGAT
  499. s fr1.chrUn 145482435 134 + 349519338 GACGGTGTCCTCGGTTGCGGGAGCCCGATCTGCTGCGATGCCTCCTCCTCCTGTCCCTGGAGCGCGAACGGGAA------CGGCGCTTGTCTCGAGACGTCGAACGCGAGCGTCTCCTCCTGCGGTCACGAGAGCGGGAC
  500. a score=23245.0
  501. s hg17.chr16 244413 4 + 88827254 ATGT
  502. s panTro1.chr18 262355 4 + 83875239 ATGT
  503. s mm5.chr17 68753542 4 - 93559791 ATGA
  504. s rn3.chr10 95244723 4 - 110733352 ATGA
  505. s canFam1.chr6 37249961 4 - 79106041 ACGA
  506. a score=198450.0
  507. s hg17.chr16 244417 264 + 88827254 TGGACCACAAGGACTTAGAGGCCGAAATCCACCCCTTGAAAAATGAAGAAAGAAAATCGCAGGAAAATC-TGGGAAATCCATCAAAAAATGAGGATAA----CGTGAAAAGCGCGCCTCCACAGTCCCGGCTCTCCCGGTGCCGAGCGGCGGCGTTTTTTCTTTCATTGTTTCTCTGCCTTTTTGTGGTGTTCGTCGTCTCATTCGTCATCCCGTGTCCAGACCGGCCGGCGTCACAGCGAATGTGGAGGATAGACTACAGTGCCGCTG
  508. s panTro1.chr18 262359 264 + 83875239 TGGACCACAAGGACTTAGAAGCCGAAATCCACCCCTTGAAAAATGAAGAAAGAAAATCGCAGGAAAATC-TGGGAAATCCATCAAAAAATGAGGATAA----CGTGAAAAGCGCGCCTCCACAGTCCCGGCTCTCCCGGTGCCGAGCGGCGGCGTTTTTTCTTTCATTGTTTCTCTGCCTTTTTGTGGTGTTCGTCGCCTCATTCGTCATCCCGTGTCCAGACCGGCCGGCGTCACAGCAAATGTGGAGGATAGACTACAGTGCCGCTG
  509. s mm5.chr17 68753546 264 - 93559791 TGGACAACAAGGACTTAGAAGCTGAAATACACCCCTTGAAGAATGAGGACAAGAAATCACAGGAAAACC-CAGGAAACCTACCAAGAAACGAAGATAA----CTTGAAGAGCAAGCCTGTGCCTTCCCGCTTGTCCCGGTGCCGCACAGTGGCATTTTTCCTTTCCCTGTTCACCTGCCTCTTCGTGGTGTTTGTCCTGTCTTTCATCATCCCATGTCCAGACCGTCCCTCCTCACAGGGCACGTGGAAGCTTGACTACAACAATGCAG
  510. s rn3.chr10 95244727 264 - 110733352 TGGATGACAAGGATCTAGAAGCTGAAATACATCCCTTGAAGAATGAGGACAAAAAGTCACAGGAAAACC-TAGGAAACCTACCAAAGACCGAGGACAA----CTTGAAGAACAAGCCTGTGCCTTCTCGCTTGTCCCGGTGTCGCACGGTGGCATTTTTCCTTTCCCTGTTCATCTGTCTCTTTGTGGTGTTTGTCCTCTCTTTCATCATCCCATGCCCAGACCGACCGTCCTCTGAGGACAAGTGGAGGCTGGACTACGACTATGCAG
  511. s canFam1.chr6 37249965 264 - 79106041 TGGACAGCAAGGACCTAGAAGCCGAAATCCACCCCCTGAGGAACGAAGACAAGAGGCTGCCCGAGACCC-CGGGAAACCCGGGCCACGCAGACGAGAA----GCTGAAAAGCTCGCCCCGGCAGCCCCGCCTCTCCCGGTGCCGCACCGTTGTGTTTTTTCTTTCACTGTTTGTCTGCCTGTTCGTAGTGTTCGTGGTTTCGTTCATCATCCCGTGCCCGGAACGGCCCGTGTCGCAGGGGATGTGGCGGATAGACTACAGCGCGGCAG
  512. s galGal2.chr14 6505218 264 - 20603938 TGGATAACAAAGACTCAGAAGCTGAGATCCACCCCCTGAAGACAGAGGACGTGAAAGCTCAAGAGAACCATGAGAACTCTGTTGA-----GAGGAGAATCATCATCAAGCAGTCGTCGCAGCTGTCTCGGCTGTCCCGCTGGCGCACCGCCGCCTTCTTCATCTCATTATTTCTGTGTCTCATCATCGTGTTTGCCTTCTCCTTTATCATTCCTTGCCCTGAGAGGCCTGTCTCAGAGAGAACGTGGCTCCGAAACTATGACAATGCAG
  513. a score=3883.0
  514. s hg17.chr16 259268 28 + 88827254 C-TAGGCCACCCCAT----CTCCACCCCCAGGG
  515. s mm5.chr17 68763356 29 - 93559791 CCTACTACTCCCCAT----CGGCACCTTCAGGG
  516. s rn3.chr10 95254895 29 - 110733352 CTTAGTCCTCCTCAT----TGCCACCTGCAGGG
  517. s canFam1.chr6 37261496 28 - 79106041 -CTAGGTGCCCCTGT----CCCCGCACGCAGGG
  518. s fr1.chrUn 32270640 32 + 349519338 -CTTGGCCTGTCCGTCCTGCTCCGCCATCCGGG
  519. s danRer1.chrNA 221970878 28 + 390413307 CCCTGGGGCCTCTAT-----TGCAAGTCCAGGG
  520. a score=-1898.0
  521. s hg17.chr16 259296 9 + 88827254 CCACAAGCC
  522. s mm5.chr17 68763385 9 - 93559791 GAACTGGTT
  523. s rn3.chr10 95254924 9 - 110733352 GAGCTGGTA
  524. s canFam1.chr6 37261524 9 - 79106041 TCACTTGCA
  525. s fr1.chrUn 32270672 9 + 349519338 CCGATGCCT
  526. s danRer1.chr1 5581271 9 + 40858791 CCATCATCC
  527. a score=2916.0
  528. s hg17.chr16 259305 2 + 88827254 GC
  529. s mm5.chr17 68763394 2 - 93559791 GC
  530. s rn3.chr10 95254933 2 - 110733352 GC
  531. s canFam1.chr6 37261533 2 - 79106041 GC
  532. s galGal2.chr14 6519763 2 - 20603938 GC
  533. s fr1.chrUn 32270681 2 + 349519338 GC
  534. s danRer1.chr1 5581280 2 + 40858791 TC
  535. a score=1053.0
  536. s hg17.chr16 259307 19 + 88827254 TG---TGGGCTCCACAGGGGTG
  537. s mm5.chr17 68763396 19 - 93559791 TG---CAGGCTCCCTGGGGGTA
  538. s rn3.chr10 95254935 19 - 110733352 TG---CAGGCTCCCCAGAGGTC
  539. s canFam1.chr6 37261535 22 - 79106041 AGTCACAGGCTCTGCAGATGTG
  540. s galGal2.chr14 6519765 19 - 20603938 CT---CGGTGTCACCGGCGGGC
  541. s danRer1.chr1 5581282 13 + 40858791 TG---TGG------TATGGGTG
  542. a score=-178.0
  543. s hg17.chr16 259307 28 + 88827254 TGTGGGCTCCACAGGGGTGGGAAGGAGT
  544. s danRer1.chr1 5581282 19 + 40858791 TGTGG------TATGGGTGACGAGA---
  545. a score=499.0
  546. s hg17.chr16 259326 3 + 88827254 GGA
  547. s panTro1.chr18 279072 3 + 83875239 GGG
  548. s mm5.chr17 68763415 3 - 93559791 GAC
  549. s rn3.chr10 95254954 3 - 110733352 GAC
  550. s canFam1.chr6 37261563 3 - 79106041 GGA
  551. s galGal2.chr14 6519784 3 - 20603938 AGG
  552. a score=4058.0
  553. s hg17.chr16 259329 6 + 88827254 AGGAGT
  554. s panTro1.chr18 279075 6 + 83875239 AGGAGT
  555. s mm5.chr17 68763418 6 - 93559791 TGGAGA
  556. s rn3.chr10 95254957 6 - 110733352 TGGAGA
  557. s canFam1.chr6 37261566 6 - 79106041 AGGAGC
  558. s galGal2.chr14 6519787 6 - 20603938 AGCAGG
  559. s danRer1.chr1 5581295 6 + 40858791 ACGAGA
  560. a score=70372.0
  561. s hg17.chr16 259335 48 + 88827254 GCAGGGCTGGGGCTCGAGTGCCGTGGCCTCCACGTAAACGGGAACACG
  562. s panTro1.chr18 279081 48 + 83875239 GCAGGGCTGGGGCTCGAGTGCCGTGGCCTCCACGTAATTGGGAACACG
  563. s mm5.chr17 68763424 48 - 93559791 GCAGGGCTGGGGCTTGAGTGCAGAGGCTTCCGCAAGAATGGAAATGGC
  564. s rn3.chr10 95254963 48 - 110733352 GCAGGGCTGGGACTTGAGTGCAGAGGCTTCCGCAAGAATGGGAATGGC
  565. s canFam1.chr6 37261572 48 - 79106041 GTGGGGCTGGGGCTCGGGTGTGGCGGCTTCCGCAGGAACGGAAAGGCC
  566. s galGal2.chr14 6519793 48 - 20603938 GCCGGGCTGGGGCTGGAGTGTCGCTGCTTGCGCATGAAGGGGAACACC
  567. s fr1.chrUn 32270683 48 + 349519338 GCGGGGGAGGGGCTGGCGTGCCGCTGGCGTCTCATGAAGGGGAAGACG
  568. s danRer1.chr1 5581301 48 + 40858791 GCAGGCGAGGGGCTGGAGTGGCGCTGCCGACGCATGAACGGGAACACA
  569. a score=5348.0
  570. s hg17.chr18 23786114 2 + 76117153 TC
  571. s panTro1.chr17 19719396 2 + 73346066 TC
  572. s mm5.chr18 16960413 2 + 91083707 TC
  573. s rn3.chr18 8050213 2 + 87338544 TC
  574. s canFam1.chr7 19431300 2 - 83037113 TC
  575. s galGal2.chr2 103976638 2 + 147590765 TC
  576. s fr1.chrUn 291830820 2 - 349519338 TC
  577. s danRer1.chrNA 203940100 2 - 390413307 TC
  578. a score=389078.0
  579. s hg17.chr18 23786116 205 + 76117153 AGTCATCA---CCTCCACCATACATGTCAGCAAGTTTCTTGAACCGTGGCCCCCAGTCGTTCAGGTAATCATAGTCCTGCTCACCACCACTACTTGAGGAATTAAGGGAGCTCAAGGACCCAGCAGTGGAGCCACTGCCTTCATAGTCAAACACTAACAGGGAGTCATATGGTGGAGCTGTGGGGTCATTGTCAGCCGCTTTAAGGCC
  580. s panTro1.chr17 19719398 205 + 73346066 AGTCATCA---CCTCCACCATACATGTCAGCAAGTTTCTTGAACCGTGGCCCCCAGTCGTTCAGGTAATCATAGTCCTGCTCACCACCACTACTTGAGGAATTAAGGGAGCTCAAGGACCCAGCAGTGGAGCCACTGCCTTCATAGTCAAACACTAACAGGGAGTCATATGGTGGAGCTGTCGGGTCATTGTCAGCCGCTTTAAGGCC
  581. s mm5.chr18 16960415 205 + 91083707 AGTCGTCA---CCACCGCCGTACATGTCCGCCAGTTTCTTGAAGCGGGGTCCCCAGTCATTCAGGTAGTCATAGTCCTGGTCCCCACCGCTACTGGAGGAGTTGAGGGAGCTCAAGGAGCCAGCCGTGGAGCCGCTGCCCTCGTAGTCAAAGACTAAGAGGGAGTCATACGGTGGCGCCGTGGGGTCGTTGTCAGCAGCTTTAAGGCC
  582. s rn3.chr18 8050215 205 + 87338544 AGTCATCA---CCACCACCATACATGTCGGCCAGCTTCTTGAAGCGGGGTCCCCAGTCATTCAGGTAGTCATAGTCCTGGTCCCCGCCGCTGCTGGAGGAGTTGAGAGAGCTCAAGGAGCCAGCCGTGGAGCCGCTGCCCTCATAGTCGAAGACTAAAAGGGAGTCATATGGTGGCGCCGTGGGGTCATTGTCAGCAGCTTTAAGGCC
  583. s canFam1.chr7 19431302 205 - 83037113 AGTCATCA---CCTCCACCATACATGTCAGCAAGTTTCTTGAACCGTGGCCCCCAGTCGTTCAGGTAGTCATAGTCCTGCTCGCCACCACTACTTGAAGAATTAAGGGAGCTCAAAGACCCAGCGGTAGAGCCACTGCCTTCGTAGTCAAAGACTAAGAGGGAGTCATATGGTGGAGCTGTGGGATCATTGTCAGCAGCTTTAAGGCC
  584. s galGal2.chr2 103976640 205 + 147590765 AGTCATCA---CCTCCACCGTACATGTCAGCAAGTTTCTTGAAACGTGGGCCCCAGTCATTTAGGTAGTCATAGTCTTGCTCACCACCGCTACTTGAGGAATTAAGAGAGCTCAAGGATCCAGCAGTGGAGCCGCTTCCTTCATAGTCAAAGACTAAGAGGGAATCGTATGGCGGGGCTGTAGGGTCGTTGTCGGCTGCTTTAAGTCC
  585. s fr1.chrUn 291830822 205 - 349519338 AGTCATCGTCCCCTCCACCGTACAGGTCGGCCAGCTTCTTGAAGCGGGGGCCCCAGTCGTTGAGGTAGTCGTAGTCCTGGTCGCCCGAGCTGAT---GGAGTTGAGCGAGCTGACGGAGCCGGCTGTCGAGCCGGTGCCCTCGTAGTCGAACACCAGCAGGGAGTCGTAGGGAGGGGCCGTGGGGTCGTTATCCGCTGCTCTCAGACC
  586. s danRer1.chrUn 257546281 205 - 367113659 AGTCGTCG---TTACCTCCGTACATGTCGGCGAGTTTGCGGAAGCGAGGGCCCCAATCGTTGAGGTAGTCATAGTCCTGGTCTCCTCCGCTGCTGGACGAGTGAAGGGAGCTTAGTGAGCCGGCCGTGGAGCCGCTGCCCTCGTAGTCAAACACCAGCAGGGAGTCATACGGAGGGGCCGTGGGATCGGTGTCGGCTGCCTTGAGGCC
  587. a score=581809.0
  588. s hg17.chr18 59406881 165 + 76117153 ATGGATTCACTTGGCGCCGTCAGCACTCGACTTGGGTTTGATCTTTTCAAAGAGCTGAAGAAAACAAATGATGGCAACATCTTCTTTTCCCCTGTGGGCATCTTGACTGCAATTGGCATGGTCCTCCTGGGGACCCGAGGAGCCACCGCTTCCCAGTTGGAGGAG
  589. s panTro1.chr17 56243482 165 + 73346066 ATGGATTCACTTGGCGCCGTCAGCACTCGACTTGGGTTTGATCTTTTCAAAGAGCTGAAGAAAACAAATGATGGCAACATCTTCTTTTCCCCTGTGGGCATCTTGACTGCAATTGGCATGCTCCTCCTGGGGACCCGAGGAGCCACCGCTTCCCAGTTGGAGGAG
  590. s mm5.chr1 106957557 165 + 195203927 ATGGACTCACTAGGCACAGCAGCCACACAGTTCCTGTTTGATCTTTTCAAAGAACTGAATAAAACAAATGATGGCAACGTCTTCTTTTCCCCTGTGGGCATCTCAACAGCCATTGGCATGATCATCCTGGGGACCCGAGGAGCCACTGCTTCTGAGTTACAGAAG
  591. s rn3.chr13 13176896 165 + 111348958 ATGGACTCACTAAGCACAGCAACCACACATTTCCTGTTTGATCTTTTCAAAGAACTGAATAAAACAAGTGACGGCAATGTCTTCTTTTCTCCTTTGGGCATCTCAACAGCCATTGGCATGATCCTCTTGGGGACCCAAGGAGCCACTGCCTCTGAGTTACAGAAG
  592. s canFam1.chr1 108508362 165 - 124897793 ATGGATTCACTTGGTGCAGCATACACTCACTTTGGGTTTAATCTCTTCCAAAAGCTGAATAAAATAAATGATGGCAACATCTTCTTTTCCCCTGTGGGCATTTCTGCTGCCATTGGCATGCTCATCCCAGGGGCCCGAGAAGCTACCGCCATGCAGTTGCAGAGG
  593. a score=1700.0
  594. s hg17.chr18 59455932 2 + 76117153 CT
  595. s panTro1.chr17 56296086 2 + 73346066 CT
  596. s mm5.chr1 106995539 2 + 195203927 TT
  597. s rn3.chr13 13306377 2 + 111348958 TT
  598. s canFam1.chr1 108539809 2 - 124897793 CT
  599. s galGal2.chr2 67392007 2 + 147590765 TA
  600. s fr1.chrUn 39424675 2 - 349519338 CT
  601. s danRer1.chr20 11152772 2 + 31913010 TT
  602. a score=2707.0
  603. s hg17.chr18 59455934 3 + 76117153 ATG
  604. s panTro1.chr17 56296088 3 + 73346066 ACG
  605. s mm5.chr1 106995541 3 + 195203927 AAG
  606. s rn3.chr13 13306379 3 + 111348958 AAG
  607. s canFam1.chr1 108539811 3 - 124897793 AAG
  608. s galGal2.chr2 67392009 3 + 147590765 ATG
  609. s fr1.chrUn 39424677 3 - 349519338 CAG
  610. s danRer1.chr20 11135889 3 + 31913010 ATG
  611. a score=316154.0
  612. s hg17.chr18 59455937 400 + 76117153 GGGATGAGAATCTGCCATAGAAGAGGATGCT-GTTGGTCTTATTTTGCCTTATGAAGAATAGGAAAGGGTGATTACAACAGAACTCTT--CATTAGTTGAAGGAGAT-GAT---------AATTCGACT-------ACTACTACAGCGGTGGCAGCTGCAGCTTCCACTCCCTCCTCAGTGACCTCCACAAAGGCCTTGTGTAGGACTTTAGATACTGAGAGACCGTGGCTCCAGGTCATGCCT-------------------------------------------------------------------------------------GAGAGGTCTGCATCCC---CATTGAAGATATTCACCATTCCCATGGTTCTCAACGTGTCCTTGAGGTCATAGCTCTC---TTCCATTTTGAACCGAGGTAAGTGTAAATCGACACATGTCT---CTCTCATATTCTGCAAACTTGTCCATTCCATCAATTTCTCAGCAGTGAGTTTCTCTTCAAG
  613. s panTro1.chr17 56298740 400 + 73346066 GGGATGAGAATCTGCCATAGAAGAGGATGCT-GTTGGTCTTATTTTGCCTTATGAAGAATAGGAAAGGGTGATTACAATGGAACTCTT--CATTAGTTGAAGGAGAT-GAT---------AATTCGACT-------ACTACTACAGCGGTGGCAGCTGCAGCTTCCGCTCCCTCCTCAGTGACCTCCACAAAGGCCTTGTGTAGGACTTTAGATACCGAGAGACCGCGGCTCCCAGTCATGCCT-------------------------------------------------------------------------------------GAGAGGTCTGCATCCC---CATTGAAGATATTCACCATTCCCATGGTTCTCAACGTGTCCTTGAGGTCATAGCTCTC---TTCCATTTTGAACCGAGGTAAGTGTAAATCGACATGTGTCT---GTCTCATATTCTGCAAACTTGTCCATTCCATCAATTTCTCAGCAGTGAGTTTCTCTTCAAG
  614. s mm5.chr1 106995544 391 + 195203927 GGGAAGAGATTGTGCCAAAGAAGAGGATGCT-GTTGGTCTTACTGTGCTTGACCAAT---------GGATGATCACAATAGAAATCTT--CTGTAATCTGTAAAGATAAAT---------TATGGGATT-----------TTATCCCCGTGGTAGCAGCAGCTTCTGTTCCCTCTTCATTTACCTCCACAAAGGACTTGTGTAAAACTTTAGACACCACAAGACCTTGAGTGCTGTTCATGCCA-------------------------------------------------------------------------------------GAGAAGTCAGCCTTCTGTGGATCAAAGGCGCCAACCATCCCCATGTGTTTCAATGGAACTGAGAGGTCATACTTCTC---TTCCACTTTGAACCGAGGCAAAGATAAATACAACTCGGTCA---TATGCATATTTTCTGCTCTTGTCCATTCTAGTAACTTTTCAGTAGAGAGTTGTTCTTCAAG
  615. s rn3.chr13 13306382 400 + 111348958 GAGAAGACATTCTGCCAAAGAAGAGGATGCT-GTTGGTAGCATTGTGCTTGATGAGGAATAAGAAAGGGTGATCACAATTGAAGTCTT--CGGTTATCTGTGCTGAT-GTT---------AAACTGACT----------TCTACCCCCGTGGCAGCAGCAGCTTCTGTCCCCTCTTCATTTACCTCCACAAAGGACTTGTGTAAAACTTTAGACACCATTAGACCTTGAGTGCTGCTCATGCCT-------------------------------------------------------------------------------------GAGAAGTCAGCCTTCTTTGAGTCAAAGGCGTCCACCATCCCCATGTGCTGCAACGGACCTGGGAGGTCATACTTCTC---TTCCACTTTGAACCGTGGCAAAGACAAATACAAGTCGATCA---TGTTCATGTTCTCTGCTCTTGTCCACTCTAGTAACTTGTCAGCAGTGAGCTGTTCTTCAAG
  616. s canFam1.chr1 108539814 397 - 124897793 GGGAAGAGACTCTGCCCAAGAAGAGGATGCT-GTTGGTCTTATTGTGCTTGATGAAGAACAGGAAAGGGTGATCGCAATGAAA-----------AGGATAGATTGGT-GCT---------GATTTGGCA----ATAACTTCTACGTCTGTGGAGGCTGCAGCCTCCGTGCCCTCTTCGGTGACCTCCACAAAGGACTTGTGCCTGACTTTAGACACCACAAGATCCTGCCTCCCTGTCATGCCT-------------------------------------------------------------------------------------GAGAAGTTGGCCCTCTTTGTGTTGAAGGCATCCACCATTCCCAGGGCTTTCAGCGTGGCCTTGAGCTCATAACTCTC---TTCTACTTTGAACCGGGGTAAGTATAAATCCACCTGCCCAT---TGCTCATATTCTGTGAGCTCGTCCACTCTATTAGGTTCTCAGCAGTGAGTTGATCTTCAAG
  617. s galGal2.chr2 67392038 400 + 147590765 GAGAGCAATATCTGCCACAGAACAAAATACT-GGAAGTTTTGTTGTGCCGGATGAAGAAGAGGAAGGGATGATCGGCAGTGAA------------GTCGGGAACGAT-CAT---------AGCACAACGGAGCACCATCACTCCTGCTGTGGCAGCTGCTGCTTCAGTGCCTTCTTCGTTGACCTCCACGAAGGACTTGTGAACCACTTCAGAGAGCACAAGCTCGTTACCAGAGGAGATTCCT-------------------------------------------------------------------------------------GAGAAGTTCGCCATCCGTAAGTCAAACGCATCACGCATTCCCATGTTGCTCAGGATGGGTTTCAGATCATAATTTTC---TTCCAGTTTAAATCTGGGTAAAGACAGCCTCACTTCTGTAC---TGTCCATCATTTCAGGATTGATCCAATCCATCAGCTTCTCGTATGTAAGTTCTCTTTCCAG
  618. s fr1.chrUn 39424680 486 - 349519338 GAGAGCAATATCTACCAGCAAACAGAATGTTCCTTGGAGGGGTTGTGTCTGATGAAGAAGAGGAAAGGATGGTCTGCATAGAA-----------ATTCTGAGGGAAT-ACTGCACAGTGCAAAGTGAAG----------ACAACACCAGTGGCAGCAGCAGCCTCAGTTCCCTCCTCATTGACTTCCACAAAAGCTTTGTGAATCACTTCTGACAGGACCAGGTCATTGGCTGGAGACATGCCTGTCAGTCAGAGGGAAAGAGAATATTTCCCATTAATATGATGGCTTGTCTCTTCTGAAAAGGCTCTTTGGAGAAAGTCTCCTACCAGAGAAGTCGCTCGCGGCTACATCAAAGGCATCCACCATGCCCATGCTGACCAGGATGTTCTTCATGTTACATTTCTC---CTCCATCTTGAACCGTGGCAGACCCACCTGGACTTCGACTA---CATTCATCATGTCTGGACGAGTCCACTCCATGAAGTTGTCATAGGTCAGCAGCTTCTCCAG
  619. s danRer1.chr20 11135892 406 + 31913010 GGGCTCTGAATCTGCCCAGAAAAAGGATGCT-GTTAGTGGGGTTGTGTCTGATGAAGAACATGAAGGGATGATCGGCTATGAAATCATGAAATGCACCTTGACAAGC-ACT---------GATTGGTAA---------TAACAATGCAGTTGCTGCTGCTGCTTCAGTTCCTTCCTCATTGACCTCAACAAAAGCCTTGTGAATCACTGCTGAAAGAAAGAGACCACCATTACTGCTCATGCCT-------------------------------------------------------------------------------------GTCAGATCAGCCTTGGTTTCCTGGAACACAGAGCTCATGCCCATCTTTTCCAGTGTTTCTGATAG---ACAGCTCTCAATCTCCAACTTGAACTTTGGCAGACGGACAATGATCTTTCTCCATGTGTCCATTTTGCCTCTACTGGTCCAGTCAAGCAGCTTTTGGAGGTTCAACTCGCTCTCCAG
  620. a score=170132.0
  621. s hg17.chr18 59600586 168 + 76117153 ATGGCCTCCCTTGCTGCAGCAAATGCAGAGTTTTGCTTCAACCTGTTCAGAGAGATGGATGACAATCAAGGAAAT------GGAAATGTGTTCTTTTCCTCTCTGAGCCTCTTCGCTGCCCTGGCCCTGGTCCGCTTGGGCGCTCAAGATGACTCCCTCTCTCAGATTGATAAG
  622. s panTro1.chr17 56457248 168 + 73346066 ATGGCCTCCCTTGCTGCAGCAAATGCAGAGTTTTGCTTCAACCTGTTCAGAGAGATGGATGACAATCAAGGAAAT------GGAAATGTGTTCTTTTCCTCTCTGAGCCTCTTCGCTGCCCTGGCCCTGGTCCGCTTGGGCGCTCAAGATGACTCTCTCTCTCAGATTGATAAG
  623. s mm5.chr1 107433492 168 + 195203927 ATGGCCTCCCTTGCTGCAGCAAATGCAGAATTTGGCTTCGACTTATTCAGAGAGATGGATAGTAGCCAAGGAAAT------GGAAATGTATTCTTCTCTTCCCTGAGCATCTTCACTGCCCTGACCCTAATCCGTCTGGGTGCTCGAGGTGACTGTGCACGTCAGATTGACAAG
  624. s rn3.chr13 13464817 168 + 111348958 ATGGCCTCCCTTGCTGCAGCAAATGCAGAATTTGGCTTCGACTTATTCAGAGAGATGGATAGTAGTCAAGGAAAC------GGAAATGTATTCTTCTCTTCCCTGAGCATCTTCACTGCCCTGAGCCTAATCCGTTTGGGTGCTCGAGGTGACTGTGCACGTCAGATTGACAAG
  625. s canFam1.chr1 108653495 168 - 124897793 ATGGCCTCCCTTGCTGCAGCAAATGCAGAGTTTTGCTTCAATCTGTTCAGAGAGATGGATAACAATCAAGGAAGT------GAAAATGTGTTCTTTTCTTCCCTGAGCATCTTCACTGCCTTGGCCCTGGTCCGTTTGGGCGCACGGGGTGATTGTGTTTCCCAGATTGATAAG
  626. s danRer1.chrNA 84211897 168 + 390413307 ATGGAGTCTCTGTCTGCAGCAAACACACAGTTTTCCCTCAACCTGTTCAAGAAGAT------CAGCGGAGGAAACGCATCAGGAAATGTGTTTTATTCTCCTGTCAGCATCTCCTCGGCTCTGGCCATGGTGTCGCTCGGTGCCAAAGGAAACACCGCAGATCAGATGTTTAAG
  627. a score=40916.0
  628. s hg17.chr19 59068595 56 + 63811651 ATGCCAGTGACGGTAACCCGCACCAC----------CATCACAACCACCACGACGTCATCTTCGGG
  629. s panTro1.chr20 56482145 56 + 61571712 ATGCCAGTGACGGTAACCCGCACCAC----------CATCACAACCACCACGACGTCATCTTCGGG
  630. s mm5.chrUn_random 23451477 45 - 102265694 ATGCCGGTAACAGTAACTCGTACAAC----------CATCACG---ACTACAACGTCA--------
  631. s rn3.chr1 203863650 45 - 268121971 ATGCCGGTCACAGTCACCCGTACAAC----------CATCACA---ACTACATCATCA--------
  632. s canFam1.chr1 18886888 56 - 124897793 ATGCCTGTGACGGTGACCCGCACGAC----------CATCACAACCACCACGTCGTCATCCTCAGG
  633. s danRer1.chr2 9429255 61 - 32943701 ACGTCAAACCAAAGTACTCCCATTACTCCTGTCTGACATCACAGTCCCTGTAAC-TCTCCTC----
  634. a score=19097.0
  635. s hg17.chr19 59068651 29 + 63811651 CCTGGGGTCCC-CCATGATCGTGGGGTCCC
  636. s panTro1.chr20 56482201 29 + 61571712 CCTGGGGTCCC-CCACGATCGTGGGGTCCC
  637. s mm5.chrUn_random 23451522 22 - 102265694 -------TCCT-CCACCACTGTGGGGTCCG
  638. s rn3.chr1 203863695 22 - 268121971 -------TCCT-CCACCACTGTGGGGTCCG
  639. s canFam1.chr1 18886944 29 - 124897793 CCTGGGCTCCC-CAACCATCGTGGGGTCCC
  640. s fr1.chrUn 129654883 29 + 349519338 CCTGCGATTTC-CCGCCATGCCGGTGTTCA
  641. s danRer1.chr2 9429316 30 - 32943701 TCTGTGATCCCATCATGGCAGTGGTGTTGC
  642. a score=0.0
  643. s hg17.chr19 59068680 4 + 63811651 CTCG
  644. a score=2300.0
  645. s hg17.chr19 59068680 4 + 63811651 C--TCG
  646. s panTro1.chr20 56482230 4 + 61571712 C--TCG
  647. s mm5.chrUn_random 23451544 4 - 102265694 C--TCG
  648. s rn3.chr1 203863717 4 - 268121971 C--CCG
  649. s canFam1.chr1 18886973 4 - 124897793 C--TCG
  650. s fr1.chrUn 129654912 6 + 349519338 CGGTCA
  651. a score=66381.0
  652. s hg17.chr19 59068684 64 + 63811651 GGCCCTGACACAGCCCCTGGGTCTCCTTCGCCTGCTGCAGC--TGGTGTCTACCTGCGTGGCCTTC
  653. s panTro1.chr20 56482234 64 + 61571712 GGCCCTGACACAGCCCCTGGGTCTCCTTCGCCTGCTGCAGC--TGGTGTCTACCTGCGTGGCCTTC
  654. s mm5.chrUn_random 23451548 64 - 102265694 GGCGCTGACCCAGCCGCTGGGCCTCCTCCGCCTCCTGCAGC--TAATATCCACCTGTGTGGCTTTC
  655. s rn3.chr1 203863721 64 - 268121971 GGCGCTGACCCAGCCCCTGGGCCTCCTCCGCCTCCTGCAGC--TAGTATCCACCTGTGTGGCTTTC
  656. s canFam1.chr1 18886977 64 - 124897793 GGCGCTGACCCAGCCCCTGGGCCTCCTCCGTCTGCTGCAGC--TGCTGTCCACCTGTGTGGCCTTC
  657. s galGal2.chr18 4859021 64 + 8919268 GGCTGTGACATCTCCAGTGGGAATAGTTCGTTTGCTGCAGA--TGATGTTTGGATGCACCACGTTC
  658. s fr1.chrUn 129654918 59 + 349519338 TGCTCTCCCAGGTCTTCTGGGT-------GCGTTTAGCAGCTTTGTTGTTCACCTGTGTGGCCTTC
  659. s danRer1.chr2 9429346 59 - 32943701 GTTCCTCACCTCTCCTGTGGACCCGAGTGGCTGCCA-------TGGTTTTCGCCTGCGTGGCCTTC
  660. a score=20765.0
  661. s hg17.chr19 59068748 35 + 63811651 TCGCTGGTGG-C---TAGCGTGGGCGCCTGGACGGGGTC
  662. s panTro1.chr20 56482298 35 + 61571712 TCGCTGGTGG-C---TAGCGTGGACGCCTGGACGGGGTC
  663. s mm5.chrUn_random 23451612 35 - 102265694 TCGCTGGTGG-C---CAGTGTGGGTGCCTGGACAGGGCC
  664. s rn3.chr1 203863785 35 - 268121971 TCACTGGTGG-C---CAGTGTGGGTGCTTGGACAGGGCC
  665. s canFam1.chr1 18887041 35 - 124897793 TCCCTGGTGG-C---CAGTGTGGGTGCTTGGACCGGGGC
  666. s galGal2.chr18 4859085 36 + 8919268 AGCCTGGTGGCC---CACCAGGGGGGATTCAGCGCAGCA
  667. s fr1.chrUn 129654977 35 + 349519338 AGCTTGGCAG-CGCACGGCGCCAACGTCC--ACGGGGG-
  668. a score=827754.0
  669. s hg17.chr19 59068783 773 + 63811651 CATGGGCAACTGGTCCATGTTCACCTGGTGCTTCTGCTTCTCCGTGACCCTGATCATCCTCATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTCTTGGCGCAACTTCCCCATCACCTTCGCC-TGCTATGCGGCCCTCTTCTGCCTCTCGGCCTCCATCATCTACCCCACCACCTATGTCCAGTTC-----C--------TGTCCCACGGCCGTTCGCGG------GACCACGCCATCGCCGCCACCTTCTTCTCCTGCATCGCGTGTGTGGCTTACGCCACCGAAGTGGCCTGGACCCGGGCCCGGCCCGGCGAGATCACTGGCTATATGGCCACCGTACCCGGGCTGCTGAAGGTGCTGGAGACCTTCGTTGCCTGCATCATCTTC---GCGTTCATCAGCGACCCCAACCTGTACCAGCACCAGCCGGCCCTGGAGTGGTGCGTGGCGGTGTACGCCATCTGCTTCATCCTAGCGGCCATCGCCATCCTGCTGAACCTGGGGGAGTGCACCAACGTGCTACCCATCCCCTTCCCCAGCTTCCTGTCGGGGCTGGCCTTGCTGTCTGTCCTCCTCTATGCCACCGCCCTTGTTCTCTGGCCCCTCTACCAGTTCGATGAGAAGTATGGCGGCCAGCCTCGGCGCTCGAGAGATGTAAGCTGCAGCCGCAGC------------CATGCCTACTACGTGTGTGCCTGGGACCGCCGACTGGCTGTGGCCATCCTGACGGCCATCAACCTACTGGCGTATGTGGCTGACCTGGTGCACTCT--GCCCACCTGGTTTTTGT-CA
  670. s panTro1.chr20 56482333 773 + 61571712 CATGGGCAACTGGTCCATGTTCACCTGGTGCTTCTGCTTCTCCGTGACCCTGATCATCCTCATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTCTTGGCGCAACTTCCCCATCACCTTCGCC-TGCTACGCGGCCCTCTTCTGCCTCTCGGCCTCCATCATCTACCCCACCACCTATGTCCAGTTC-----C--------TGCCCCACGGTCGTTCGCGG------GACCACGCCATCGCCGCCACCTTCTTCTCCTGCATCGCGTGTGTGGCTTACGCCACCGAAGTGGCCTGGACCCGGGCCCGGCCCGGCGAGATCACTGGCTATATGGCCACCGTACCCGGGCTGCTGAAGGTGCTGGAGACCTTCGTGGCCTGCATCATCTTC---GCGTTCATCAGCGACCCCAACCTGTACCAGCACCAGCCGGCCCTGGAGTGGTGCGTGGCGGTGTACGCCATCTGCTTCATCCTAGCGGCCATCGCCATCCTGCTGAACCTGGGGGAGTGCACCAACGTGCTACCCATCCCCTTCCCCAGCTTCCTGTCGGGGCTGGCCTTGCTGTCTGTCCTCCTCTATGCCACTGCCCTTGTTCTCTGGCCCCTCTACCAGTTCGATGAGAAGTATGGCGGCCAGCCTCGGCGCTCGAGAGATGTAAGCTGCAGCCGCAGC------------CATGCCTACTACGTGTGTGCCTGGGACCGCCGACTGGCTGTGGCCATCCTGACGGCCATCAACCTACTGGCGTATGTGGCTGACCTGGTGCACTCT--GCCCACCTGGTTTTTGT-CA
  671. s mm5.chrUn_random 23451647 785 - 102265694 CATGGGTAACTGGGCCATGTTCACCTGGTGTTTCTGCTTTGCTGTTACCCTCATCATCCTGATTGTGGAGTTAGGTGGACTCCAGGCCCACTTCCCCCTGTCATGGCGAAACTTCCCCATCACCTTTGCC-TGCTACGCGGCCCTCTTCTGCCTGTCGTCTTCCATCATCTATCCCACCACCTATGTGCAGTTC-----C--------TAGCTCATGGACGTACCCGG------GACCATGCCATCGCTGCCACCACTTTCTCCTGCGTTGCCTGTTTGGCGTATGCCACTGAAGTGGCCTGGACCCGTGCAAGGCCCGGTGAGATCACTGGCTATATGGCTACCGTGCCAGGGCTGCTCAAAGTTTTTGAGACCTTCGTAGCCTGTATCATCTTT---GCCTTCATCAGTGAGCCGCTCCTGTATAATCAGAAGCCAGCCCTGGAGTGGTGTGTGGCAGTCTATGCCATCTGCTTCATACTAGCAGGGGTGACCATCCTGCTCAACCTGGGGGATTGTACCAACGTGTTGCCCATCCCTTTCCCCACCTTCCTCTCAGGCTTGGCCTTACTCTCTGTTCTCTTTTACGCCACTGCCATCGTCCTCTGGCCCCTCTACCAATTTGATCAGAGATATCAGGGCCAACCCCGCCGTTCAATGGATCCAAGCTGCACTCGTAGTATTAGTTATATACAACCCAACACGGTGTGTTTCTGGGACCGACGACTGGCGGTGTCCATCCTGACAGGTATCAACCTGCTGGCATATGTGTCTGATCTGGTGTACTCC--ACTCGTCTGGTGTTCGT-CA
  672. s rn3.chr1 203863820 779 - 268121971 CATGGGTAACTGGGCCATGTTCACCTGGTGTTTCTGCTTTGCTGTTACCCTCATCATCCTGATTGTGGAGTTAGGTGGATTCCAGGCCCGCTTCCCCCTGTCATGGCGAAACTTCCCTATCACCTTCGCC-TGTTACGCGGCCCTCTTCTGCCTGTCGTCTTCCATCATCTATCCCACCACCTACGTGCAGTTC-----C--------TACCTCACGGACGTTCCCGG------GACCACGCCATCGCTGCCACCACCTTCTCCTGCGTTGCCTGTTTGGCGTATGCTACTGAAGTGGCCTGGACTCGTGCAAGGCCTGGTGAGATCACTGGCTACATGGCTACCGTGCCAGGGCTGCTCAAAGTGTTCGAGACCTTCGTAGCCTGCATCATCTTT---GCCTTCATCAGTGAGCCGAGCCTGTACCAGCAAAGGCCGGCCCTGGAATGGTGTGTGGCAGTCTATGCCATCTGCTTCATCCTAGCAGCAGTGACCGTCCTACTCAACCTGGGGGATTGTACCAACATGCTGCCCATCCCTTTCCCTACCTTCCTGTCAGGCCTGGCCTTACTGTCTGTGCTCCTTTACGCCACTGCCATCGTCCTCTGGCCCCTCTACCAATTTGATCAGAGGTATAACAGCCAACCCCGCCGTTCAATGGATCCAAGCTGCTCTCGTAGT------TATGTACAACCCAATGAAGTGTGTAACTGGGACCGACGGCTGGCGGTGTCCATCCTGACAGGTATCAACCTGCTGGCATATGTGTCTGATCTGGTGTATTCC--ACCCGTCTGGTGTTCGT-CA
  673. s canFam1.chr1 18887076 773 - 124897793 CATGGGCAACTGGTCCATGTTCACATGGTGCTTCTGCTTCGCTGTGACCCTCATCATCCTAATAGTCGAGTTAGGTGGCCTCCAGTCCCGCTTCCCCCTGTCCTGGAGAAACTTCCCCATCACCTACGCC-TGCTACGCTGCCCTCTTCTGCCTGTCGGCCTCCATCATCTACCCCACCACCTACGTTCAGTTC-----C--------TGTCTCATGGCCGCTCCCGG------GACCATGCCATCGCCGCCACTGCCTTCTCCTGCATCGCTTGTGTGGCTTATGCCACCGAAGTGGCCTGGACCCGGGCCCGTCCCGGAGAGATCACCGGCTACATGGCCACTGTGCCGGGCCTGCTCAAGGTGCTGGAGACCTTTGTGGCCTGCATCATCTTC---GCCTTCATCAGCAACCCCTCCCTGTACCAGCACCAGCCGGCCCTGGAGTGGTGTGTGGCCGTCTACTCCATCTGTTTCATCCTGGCGGCTGTGGCCATCCTACTGAACCTGGGGGACTGCACCAACATGCTGCCCATCTCCTTCCCCAGTTTCCTGTCGGGCCTGGCCCTGCTCTCCGTCCTGCTGTATGCCACGGCTCTGGTTCTCTGGCCGCTCTACCAGTTCAACGAGAAGTATGGTGGCCAGCCCCGTCGGTCGAGGGATGTTAGCTGCGCCGACAGG------------CACACCTACTACGTGTGTACCTGGGACCGCCGCCTGGCTGTGGCCATCCTGACAGCCATCAACCTGCTGGCTTACGTGGCTGACCTGGTGTACTCG--GCCCGCCTGGTTTTTGT-TA
  674. s galGal2.chr18 4859121 763 + 8919268 TAC-GGCACTTTCTGCATGTTCGTCTGGACCTTCTGCTTTGCTGTCACTGTCTTTATCATTACCTGCGAGTTCACGCACCTGCACAGCTGTCTGAGCATCTCCTGGGGAAACTTCACAGCTGCGTTCGCCATGCT-CGCCACGCTCATGTCGGTCACAGCGGCGGTGATCTACCCGCTCTACTTCGTGCAGCTCGGCTGC--------TACCCCATCACC-TGCGAGG-TGAGAGACTTCCGCATAGCGGCCAGCGTCTTTGCCGGCCTCGTGTTCGTTGTGTATGGCGCGGAGGTGTTCTTGACCAGAGCCAAACCAGGACAGGTCACCAGCTACATGGCCACTGTCTCTGGGCTCCTGAAGATCGTACAGGCCTTTGTGGCTTGCATCATCTTTGGGGCGCTGGTGAACGA---CAGCCAGTATAGCAAATACGTGGCCACACAGTGGTGCGTGGCCGTCTACAGCTTCTGCTTTATGGTCACGGTGGTGGTGGTCGCCTTCAGTGTCACTGGTAAGACCGCCCAGCTGTGCTTCCCCTTCGAGCGCTCTGTGGTCGTCTACACTTTCGGGGCCGTCCTGCTGTACGTGAGCGCGGCCGTCATCTGGCCGGTGTTCTGCTTTGACAGCAAGTACGGCTCCCCGCAGCGCC---------------------CCAGCGCC------------TGTGCCAAGGGCAGGTGCCCCTGGGACAGCCAGCTGGTGGTGGCCATCTTCACCTACGTCAACCTGCTGCTCTACGTGGTAGACCTGGCGTACTCCCAGCGCATCCGCTTCGTATCCC
  675. s fr1.chrUn 129655012 728 + 349519338 CATGGCTGACTGGTGCATCTTCTGCTGGGTGTTCAGCTTCACCTGCACTCTGCTGGTCCTGCTGGTGGAGCAGTTTGGCCTTCAGGCCCGCATCCCAGTCTCCTGGTCCAACTTCCCCATCACCGTGGCC-TGCTACGCCGCCCTCCTCTGCCTGTCTGCTTCCGTCATCTTTCCCCTGTTCTTCCTGAAGGAG-----CAGGGGTGGTGGTACGCCGACGAACGCAG--------CTTCCGCATCACCTCCACGATCTTCTCCTGCCTGGCGGCGGTGGCCTACATCTGCGAGGTGAGCCTGACCAAGGCGAAACCCGGACAGGTGGCGGGATACATGGCCACGGTCCCGGGCCTCCTGAAGGTGTGCCAGACCGTTGTGGCCTGCATCATCTTC---ATCCTGATCAGCAACCCCGTCTCCTACAGCCACCACGCGGCGCTGGAGTGGTGCATGGCCGTTTACTGCATCTGCTTCATCGTCTCCATGGTGGTGGTGATCCTGTGCGTGGGCGAATGCACCGGGTTTCTCCCGGTCCCCTTCTCCCAGTTCCTGTCAGCGTACGGCCTCCTGGCCTTCCTCATGTACTTGTCAGCTGTCATCGTCTGGCCCATTTTCACGTTTGACAAAAAGTA------------CCGGCGTGGAGGCGATAT--------GTCAAAGC-----------------------------------AGATCGGCG--TGGCAGTG------CTCACCGCCATCAACATGCTGCTGTACCTCGCTGACCTGGTCTACACC--GCTCACCTGGTGTTCAT-CA
  676. s danRer1.chr2 9429440 764 - 32943701 CACCGGCGACTGGTGCGTGTTCTGCTGGAGCTTCAGTTTCGTGGGAACTCTTCTAATCATCCTAGTGGAGATGTTTGGCCTGCAGACGCGTGCCCCAGTCTCGTGGAAGAACTTTCCCATCACGTTCGCC-TGCTACGCCTCTCTCCTCTGCCTCTCTGCGTCCATCATATTCCCCTTGTACTTCCTGAAGGGC-----T--------T---TGCTGGGCGCACTGAGATGATTAACTGCCGCATCGTGTCCACTGTATTTTCTTGCCTTGCTACTATCGCCTATTTAAGCGAGGTGAGTCTCAGTAAGGCCCGTCCAGGAGAAGTGTCCGGCTACATGGCTACCGCACCAGGGCTGCTAAAAGTGTGCGAAACCTTCATCGCCTGCATCATCTTC---GTCTTCATCAGCGAGCCCGAGTCGTACAAACAGAATGCGGCGACCCAGTGGTGTTTGGCTGTGTACTGCATCTGCTTCATTTTATCGGCAGGCATCATTGTGATGTGTGTTGGCGAATGCACAGGTTGCTTGCCTTTCTCCTTCGCCCGCTTCCTATCCACGTATGCCCTGCTGGCTGTGAGCATGTATCTGTCGGCCACCATCATCTGGCCCATTTATAAGTTCGACAATAAGCACGGAGGCCAGAGCCACCGACCAA------------ACATCTGCGGG------------TCCAGCATTGGACTTTGCCCGTGGGACAAACTGGTCGCCATTACTGTGCTCAGCTCGCTTAACTTCATTCTTTATCTGGCTGATCTCATTTACTCC--GCAAGGCTAGTGTTTGT-TA
  677. a score=10623.0
  678. s hg17.chr19 59069556 8 + 63811651 AGGTCTAA
  679. s panTro1.chr20 56483106 8 + 61571712 AGGTCTAA
  680. s mm5.chrUn_random 23452432 8 - 102265694 AGGTCTGA
  681. s rn3.chr1 203864599 8 - 268121971 AGGTCTAA
  682. s canFam1.chr1 18887849 8 - 124897793 GGGTTTGA
  683. s galGal2.chr18 4859884 8 + 8919268 ACATCTGA
  684. s danRer1.chr2 9430204 8 - 32943701 ATGCTTAA
  685. a score=64200.0
  686. s hg17.chr19 59236026 120 + 63811651 CTACACTTTCAGTGCCGCATATTCATGAGATCCTGGGGGCTCCTGGGTGGTGT-CTGAAGCTGCCTCAGACAGGGCGCTGGTGCTTAGCTCAGCATAGGTCACTCCTTGGGGG--TCTGCCGT
  687. s panTro1.chr20 56680126 120 + 61571712 CTACACTTTCAGTGCCGCATATTCACGAGATCCTGGGGGCTCCTGGGTGGTGT-CTGAAGCTGCCTCAGACAGGGCGCTGGTGCTTAGCTCAGCATAGGTCACTCCTTGGGGG--TCTGCCGT
  688. s canFam1.chr1 18994847 123 - 124897793 CTTCACCTGCCGCACTGCACATTCACAAGATCCTGGGGACTCCTCGGTGGGGCACAGAAGCTGCCTTAGGTGGTGCCTTGGGGTTTAGATCAGCATGGCTCACTCCCTGGGGGGTCTTTCAGT
  689. a score=41374.0
  690. s hg17.chr19 59297998 10 + 63811651 ATGGCTGCGA
  691. s mm5.chr7_random 31672903 10 + 46185828 ATGGCCGGGA
  692. s rn3.chr1 204132123 10 - 268121971 ATGGCTGCTA
  693. s canFam1.chr1 19108689 10 - 124897793 ATGGCCGGGA
  694. a score=139739.0
  695. s hg17.chr19 59302168 120 + 63811651 TCAGTCAGAGGCTGGGCTGGCCAGGGTCGGGTAGGGCAGCAGTTTGTCTGGACCCCGAGAAACCCAACTGGAATCCAGGGCCTCATCTGCTTCAAAGCCAAAGTCTTCCTCAACCTTAAT
  696. s panTro1.chr20 56743920 120 + 61571712 TCAGTCAGAGGCTGGGCTGGCCAGGGTCGGGTAGGGCAGCAGTTTGTCTGGACCCCGAGAAACCCAACTGGAATCCAGGGCCTCATCTGCTTCAAAGCCAAAGTCTTCCTCAACCTTAAT
  697. s mm5.chr7_random 31675860 120 + 46185828 TTAGTCAAAGGGTGGGCTGGCCAGGGTAGGGTAGGGTAGCAATTTGTCTGGCTCTCGGGAAACCCAACTTGAATCCAAGGCCTCATCTGCTTCAAAGCCAAAGTCTTCCTCAACCTTAAT
  698. s rn3.chr1 204134929 120 - 268121971 TTAGTCAAAGGGTGGGCTAGCTAGGGTAGGGTAGGGTAGCAATTTGTCTGGCCCTCGGGAAACCCAACTTGAATCCAAGGCCTCATCTGCTTCAAAGCCAAAGTCTTCCTCGACCTTAAT
  699. s canFam1.chr1 19111006 120 - 124897793 TCAGTCAAATGGGGGACTGGCTAGGGTGGGGTAGGGCAGCAGTTTGTCTGGCCCCCGAGAAACCCAACTGGAGTCCAGGGCCTCATCTGCTTCGAAGCCAAAGTCTTCCTCGACCTTAAT
  700. a score=46787.0
  701. s hg17.chr2 118288583 7 + 243018229 ATGTCAC
  702. s panTro1.chr13 4310009 7 + 134309081 ATGTCTC
  703. s mm5.chr1 73854532 7 - 195203927 ATGTCGC
  704. s rn3.chr13 77744300 7 - 111348958 ATGTCGC
  705. s canFam1.chr19 21837737 7 - 56914383 ATGTCCC
  706. a score=62416.0
  707. s hg17.chr2 118288590 78 + 243018229 ACCTGCCGATGAAACTCCTGCGTAAGAAGATCGAGAAGCGGAACCTCAAATTGCGGCAGCGGAACCTAAAGTTTCAGG
  708. s panTro1.chr13 4310016 78 + 134309081 ACCTGCCGATGAAACTCCTGCGTAAGAAGATCGAGAAGCGGAACCTCAAATTGCGGCAGCGGAACCTAAAGTTGCAGG
  709. s mm5.chr1 73854539 78 - 195203927 AGTTACAGATGAAACTCCTGCGCAGGAAGATCGAGAAGCGGAATGCCAAGCTGCGGCAGCGAAACCTGAAGCTGCAAG
  710. s rn3.chr13 77744307 78 - 111348958 AGTTACAGATGAAACTCCTGCGCAAGAAGATCGAAAAGCGGAACGCCAAGCTGCGGCAACGGAACCTGAAGCTGCAAG
  711. s canFam1.chr19 21837744 78 - 56914383 ATCTACCCATGAAACTCCTGCGCAAGAAGATAGAGAAACGGAATCTCAAGTTGCGCCAGCGAAACCTGAAGCTCCGGG
  712. s galGal2.chr7 7730657 78 - 37338262 ACCTGCCCATGCGGCTGCTCCGCAAGAAGATCCACAAGAGGAACCTGAAGCTGCGGCAGCGCAACCTGAAGCTGCGGG
  713. a score=141298.0
  714. s hg17.chr2 118394148 8 + 243018229 TCAGGAGG
  715. s panTro1.chr13 4415862 8 + 134309081 TCAGGAGG
  716. s mm5.chr1 73920237 8 - 195203927 TCAGGAGG
  717. s rn3.chr13 77811845 8 - 111348958 TCAGGAGG
  718. s canFam1.chr19 21899390 8 - 56914383 TCAGGAGG
  719. s galGal2.chr7 7752959 8 - 37338262 TCAGGAAG
  720. a score=65234.0
  721. s hg17.chr2 118394156 46 + 243018229 CCTTCGCTTTCACCTTGGACAGCAGCATCTCGTTCTTGCGGCCCTC
  722. s panTro1.chr13 4415870 46 + 134309081 CCTTCGCTTTCACCTTGGACAGCAGCATCTCATTCTTGCGGCCCTC
  723. s mm5.chr1 73920245 46 - 195203927 CCTTGGCTTTGATCTTAGATAGTAATAGCTCATTCTTTCGGCCCTC
  724. s rn3.chr13 77811853 46 - 111348958 CCTTGGCTTTGATCTTAGACAGTAATAGCTCATTCTTTCGGCCCTC
  725. s canFam1.chr19 21899398 46 - 56914383 CCTTGGCTTTCACCTTGGACAGCAGCACCTCATTCTTGCGGCCCTC
  726. s galGal2.chr7 7752967 46 - 37338262 AACTAGCTTTCAGCTTGGACAGCAGCATTTCGTTCTTACGACATTC
  727. s danRer1.chr9 4164500 46 - 28422069 CTTTAGCCCTCAGTTTAGACAACAGCATCTCATTCTTACGGCACTC
  728. a score=68843.0
  729. s hg17.chr2 220190202 40 + 243018229 ATGCTCAAAGCGGTGATCCTGATTGGAGGCCCTCAAAAGG
  730. s panTro1.chr13 110354917 40 + 134309081 ATGCTCAAAGCGGTGATCCTGATTGGAGGCCCTCAAAAGG
  731. s mm5.chr1 75883503 40 + 195203927 ATGCTCAAAGCTGTGATTCTCATTGGAGGCCCCCAGAAGG
  732. s rn3.chr9 74861356 40 + 113649943 ATGCTCAAAGCTGTGATCCTCATTGGAGGACCCCAGAAGG
  733. s canFam1.chr37 28991402 40 + 33897405 ATGCTCAAAGCTGTGATCCTGATTGGAGGCCCTCAAAAGG
  734. s fr1.chrUn 298594715 40 - 349519338 ATGTTGAAGGCAGTTATTTTAATCGGAGGCCCACAGAAGG
  735. s danRer1.chrUn 200789632 40 + 367113659 ATGCTGAAGGCTGTCATTCTTATCGGAGGCCCCCAAAAAG
  736. a score=2052.0
  737. s hg17.chr2 220229609 2 + 243018229 TC
  738. s panTro1.chr13 110394704 2 + 134309081 TC
  739. s mm5.chr1 75920524 2 + 195203927 TT
  740. s rn3.chr9 74897410 2 + 113649943 TT
  741. s canFam1.chr37 29028801 2 + 33897405 TC
  742. s galGal2.chr7 14430359 2 - 37338262 TC
  743. s fr1.chrUn 298724631 2 - 349519338 TC
  744. s danRer1.chrUn 144716830 2 + 367113659 TT
  745. a score=1675466.0
  746. s hg17.chr2 220229611 1258 + 243018229 AGGTGCTGTTGCCCTGCTCCTGTTCAAAGAGTAGCATGGCCAGCTGGGTTCGGGAGCCGAGGCCCTCAAGCACGCTCTGGAGGCAGCGGTGGTACAGGTCCTCACTGAGCCTCGCGCTGCACGTCTGGGCCCGGTAGCGCTGCAGCAGCGCCGGCTCCACCGCCCGCAGCACATGCAGACTGGAGAAGTGGAGGAACAGCTCGTACACATCCAGGCTCTCCAGCAGCTCCTCTTCTTGTTCTGAGGCTGCCGCCAGGCGCCCACGGGCTGCCACATAGTCGGAGTTGTAGAAGCAGGCCTCGCTGGCTGCCTGGCGATCAAAGCGGCCAGTGTCACGGCCCAGCTCTGGGGGCCCAGG----CCCTTGTGGTGG----------------------GGCCACAGCTGGGTGGAAGGCTTGGAAATGCATGGGAAAGAAGGCCTGCCAGCCGGAGATGGCATGCATGCGGCAGCGGTTCAGGAAGTCAGGCGTGAGCACCGTGTCTGGCCCGGCCAGCAGGAACAGTGTGTCCAGCGGGTGCTTCTTGGAGAGTAGATCCATGAGGCGCAGTGGTGAGGGTGCGGCTGTCTGCACACTGAGCCATGGCACCCGGGCACCGGGGAAACGCCGCTCCAGCTCTGCCACGTGGGCCTTGACAGGTGCGAAGACATCTGCATGGGCCACGCGCTGGGCCTGGCGCGGCTCATACAGTAGCAGCAGGGTCAGGGCTGCCGCAGCATCACCAGGCTCCAGTGCTGCAGTGGCAAAGGCCTCCAAGAAGCCAGGGGCCAGGTCACGCTCAGCCGCAGCTAGAGGCAGCAGCACAGTGAGACGTGAGGCCTCAGTGACATAGGGCACAGGCAAGATCTCCACGCGGCTCAGCGGCCGGAGCAGCTGCACTCGGCGAGTGAGGGGCCGGCGGCCTCCCTGGGGGGTCAGTGCCTCCAGCTGCAAGTCCAGCGTGTATTCCATACCCCGGGCCGGATCAAAGCGTCGGTAGCCATTCACCAGCTGCTGCTTCTGGAGCCGCAAGGCCGGGTGGTAGCGGCGGTTCAGCTCCTCTAGAGCTGTCCCCAGAACATCGGCCACATCAGCCCGGTCAGCCCCACGCAGTGGGCAGCGGGGTGAGCCATCGGCGCAGGAGAAAGCGTGCTGCTCCGTGAAGTAGTCCCAGCGCAGCACCTCAAAGCGGGAGGCCGGGCGGGATGGTGCTGGAATACCCACGGGCCAAGCAGCTGCCTGGTCCCCATCAACGGCCAGATGGCTGGTATTCTGGATCTCCCA
  747. s panTro1.chr13 110394706 1258 + 134309081 AGGTGCTGTTGCCCTGCTCCTGTTCAAAGAGTAGCATGGCCAGCTGGGTTCGGGAGCCGAGGCCCTCAAGCACGCTCTGGCGGCAGCGGTGGTACAGGTCCTCACTGAGCCTCGCGCTGCACGTCTGGGCCCGGTAGCGCTGCAGCAGCGCCGGCTCCACCGCCCGCAGCACATGCAGACTGGAGAAGTGGAGGAACAGCTCGTACACATCCAGGCTCTCCAGCAGCTCCTCTTCTTGTTCTGAGGCTGCCGCCAGGCGCCCACGGGCTGCCACGTAGTCGGAGTTGTAGAAGCAGGCCTCGCTGGCTGCCTGGCGATCAAAGCGGCCAGTGTCACGGCCCAGCTCTGGGGGCCCAGG----CCCTTGTGGTGG----------------------GGCCACAGCTGGGTGGAAGGCTTGGAAATGCATGGGAAAGAAGGCCTGCCAGCCGGAGATGGCATGCATGCGGCAGCGGTTCAGGAAGTCAGGCGTGAGCACCGTGTCTGGCCCGGCCAGCAGGAACAGTGTGTCCAGCGGGTGCTTCTTGGAGAGTAGATCCATGAGGCGCAGTGGTGAGGGTGCGGCTGTCTGCACACTGAGCCATGGCACCCGGGCACCGGGGAAACGCCGCTCCAGCTCTGCCACGTGGGCCTTGACAGGTGCGAAGACATCTGCGTGGGCCGCGCGCTGGGCCTGGCGCGGCTCATACAGTAGCAGCAGGGTCAGGGCTGCCGCAGCATCACCAGGCTCCAGTGCTGCAGTGGCAAAGGCCTCCAAGAAGCCAGGGGCCAGGTCACGCTCAGCCGCAGCTAGAGGCAGCAGCACAGTGAGACGTGAGGCCTCAGTGACATAGGGCACAGGCAAGATCTCCACGCGGCTCAGTGGCCGGAGCAGCTGCACTCGGCGAGTGAGGGGCCGGCGGCCTCCCTGGGGGGTCAGTGCCTCCAGCTGCAAGTCTAGCATGTATTCCATACCCCGGGCCGGATCAAAGCGTCGGTAGCCATTCACCAGCTGCTGCTTCTGGAGCCGCAAGGCCGGGTGGTAGCGGCGGTTGAGCTCCTCTAGAGCTGTCCCCAGAACATCGGCCACATCAGCCCGGTCAGCCCCACGCAGTGGGCAGCGGGGTGAGCCATCGGCGCAAGAGAAAGCGTGCTGCTCCGTGAAGTAGTCCCAGCGCAGCACCTCAAAGCGGGAGGCCGGGCGGGATGGTGCTGGAATGCCCACGGGCCAAGCAGCTGCCCGGTCCCCATCAACGGCCAGACGGCTGGTATTCTGGATCTCCCA
  748. s mm5.chr1 75920526 1255 + 195203927 AGGTGCTGTTCCCCTGTTCCTGCTCAAAGAGCAGCATGGCAAGCTGGGTGCGGGAGCCAAGGCCCTCAAGTACGCTCTGGCGACAGCGGTGGTAAAGGTCTTCACTGAGCCGTGCACTGCACGGCTGGGCCCGGTAGCGCTGCAGCAAGGCTGGCTCTACTGCTCTCAGCACGTGCAAGTTGGAGAAGCGCAGAAACAACTCGTACACATCCAGGCTCTCCAGCAGCTCCTCCTCCTGCTCCGAGGCCGCCACCAGCCGGCCACGGGCCGCCACATAGTCGGAGTTGTAGAAGCATGCCTCACTGGCAGCCTGGCGATCAAAGTGACCGGTGTCACGGCCCAGCTCTGGTGGCCCAGG----GCCCTGAGGTGG----------------------AGCCACAGCAGGGTGGAAGGCCTGGAAGTGCATGGGGAAGAAGGCCTGCCAGCCAGAGATGGCATGCATGCGGCAGCGGTTCAGGAAATCAGGTGTGAGTACCGTGTCTGGCCCGGCCAGCAGGAACAGAGTGTCTAGTGGGTGCTTCTTGGACAGCAGATCCATGAGACGCAGTGGAGAGGGCGCTGCTGTCTGCACACTGAGCCAGGGCACCCGGGCACCAGGGAAACGCCGCTCTAGCTCTGCCACGTGGGCCTTGACAGGTGCGAAGACGTCTGAGTGGGCTGCCCGCTGGGCCTGGCGTGGCTCATACAGCAGCAGCAGGGTCAAGGCTGCT---GCATCACCAGGTTCCAGGGCTGCAGTGGCAAAGGCTTCTAAGAAGCCAGAAGCCAGGTCTCGTTCCGCTGCAGCCAGCGGCAGTAGCACAGTGAGCCGAGAAGCCTCGGTGACATAGGGTACAGGCAAGATCTCCACTCGGCTCAAGGGCCGAAGGAGCTGCACCCTGCGGGTGAGGGGCCAGCGGCCACCCTGGGGTGTCAGCGCTTCCAGCTGCAGGTCTAGTGTGTACTCCATGCCTCGGGCTGGATCAAAACGCCGGTAGCCGTTCACCAGCTGTTGCTTCTGGAGCTGCAGCGCTGGCTGGTAACGGCGGTTGAGCTCCTCTAAGGCTGTCCCCAGGACGTCAGCCACATCAGCCTGGTCGGCCCCACGCAACGGGCAGCGGGGAGAGCCATCGGCGCAGGAGAACGCGTATTGTTCTGTGAAGTAGTCCCAGCGCAGAACCTCAAAGCGTGAGGCAGGGCGAGACGGTGCTGGGATGCCCACTGGCCAGGCAGAGGCTCTCTCCCCATCAGCAGCCAGTCGGCTGGTATTCTGGATCTCCCA
  749. s rn3.chr9 74897412 1255 + 113649943 AGGTGCTGTTACCCTGTTCCTGTTCAAAGAGCAGCATGGCAAGCTGGGTGCGGGAGCCAAGGCCCTCAAGCACGCTCTGGCGACAGCGGTGATAAAGGTCCTCGCTGAGCCGAGCGCTGCATGGCTGGGCCCGGTAGCGCTGCAGCAAGGCTGGTTCCACTGCCCTCAGCACATGCAAGCTAGAGAAGCGTAGAAACAACTCATACACATCCAGGCTCTCCAGCAGCTCCTCCTCCTGCTCGGAGACTGCCACCAGCCGTCCACGGGCCGCCACATAGTCGGAGTTGTAGAAGCATGCCTCGCTGGCAGCCTGACGATCAAAGTGGCCGGTGTCACGGCCCAGTTCTGGTGGCCCAGG----GCCCTGAGGTGG----------------------AGCCACAGCAGGGTGGAAGGCCTGGAAGTGCATGGGAAAGAAGGCTTGCCAGCCCGAGATGGCGTGCATGCGGCAGCGGTTCAGGAAGTCGGGTGTGAGCACTGTGTCTGGCCCGGCCAGCAGGAACAGAGTGTCCAGCGGGTGCTTCTTGGAGAGTAGATCCATGAGGCGCAGCGGAGAGGGCGCGGATGTCTGTACACTGAGCCAGGGCACTCGGGCACCAGGGAAACGCCGCTCTAGCTCGGCCACGTGGGCTTTGACGGGTGCGAAGACATCTGCGTGGGCTGCCCGCTGGGCCTGGCGTGGCTCATACAGCAGCAGCAGGGTCAAGGCTGCG---GCATCGCCAGGTTCCAGTGCTGCAGTGGCAAAGGCTTCTAGGAAGCCAGATGCCAGGTCACACTCTGCTGCAGCCAGAGGCAGCAGCACAGTGACCCGAGAAGCCTCGGTGACATAGGGCACAGGCAAGATCTCCACTCGGCTCAAGGGCCGAAGGAGCTGTACCCTGTGGGTGAGGGGCCAGCGGCCACCCTGGGGCGTCAGCGCTTCCAGCTGCAAGTCTAGTGTGTACTCCATACCTCGGGCTGGATCAAAACGCCGGTAGCCATTCACCAGCTGTTGCTTCTGGAGCCGCAGTGCTGGCTGGTAACGGCGGTTGAGCTCCTCTAAGGCTGTTCCTAGGACATCAGCCACATCGGCCTGGTCGGCCCCACGCAGCAGGCAGCGGGGTGAGCCGTCAGCACAGGAGAAAGTGTGCTGTTCCGTGAAGTAGTCCCAGCGCAGAACCTCAAAGCGCGAGGCAGGGCGAGACGGCGCTGGAATGCCCACTGGCCAGGTAGAAGCCCTCTCCCCATCAGCAGCCAGTCTGCTGGTATTCTGGATCTCCCA
  750. s canFam1.chr37 29028803 1258 + 33897405 AGGTGCTGTTGCCCTGCTCCTGCTCAAAGAGCAGCATGGCCAGCTGGGTGCGGGAGCCCAGGCCCTCCAGCTCGCTCTGGCGGCAGCGGTGGTACAGGTCCTCGCTGAGCCGCGCGCTGCACGCCTGCGCCCGGTAGCGCTGCAGCAGCGCTGGTTCCACGGCGCGCAGCACGTGTAGGCCCGAGAAGCGCAGGAACAGCTCGTACACGTCCGTGCTCTCCAGCAGCTCCTCTTCCTGCTCCGAGGCCGCTGCCAGCCGTCCGCGGGCTGCCACGTAGTCGGAGTTGTAGAAGCAGGCCTCGCTGGCCGCCTGGCGGTCGAAGCGGCCCGTGTCTCGGCCCAGCTccgggggcccggg----gccctggggggg----------------------cgccacggccgggTGGAAGGCCTGGAAGTGCATGGGGAAGAAGGCCTGCCAGCCAGAGATGGCGTGCATGCGGCAGCGGTTCAGGAAGTCGGGCGTGAGCACCGTGTCGGGCCCGGCCAGCAGGAACAGCGTGTCCAGCGGGTGCTTCTTGGAGAGCAGGTCCATGAGGCGCAGCGGCGAGGGTGCAGCTGTCTGCACGCTGAGCCAGGGCACCCGGGCACCCGGGAAACGCCGCTCGAGTTCCGCCACGTGGGCCTTGACAGGCGCAAAGACATCTGCGTGGGCCGCCCGCTGGGCCTGTCGTGGCTCGTACAGGAGCAGCAGGGTCAGGGCTGCAGCCGCGTCACCCGGCTCCAGCGCCGCGGTGGCGAAGGCCTCCAGGAAGCCAGGGGCCAGGTCCCGCTCGGCCGCAGCCAGAGGCAGCAACACGGTGAGACGCGACGCCTCGGTGACGTAGGGCACAGGCAGGATCTCCACGCGGCTCAGGGGCCGCAGCAGCTGCACCCGGCGGGTGAGGGGCCGGCGGCCGCCCTGCGGGGTCAGCACCTCCAGCTGCAGGTCCAGCGTGTACTCCATGCCGCGGGCAGGATCGAAGCGCCGGTAGCCGTTGACCAGCTGCTGCTTCTCGAGCCGCAGGGCCGGGTGGTAGCGGCGGTTGAGCTCTTCCAGGGCGGCACCCAGCACGTCGGCCACGTCGGCCCGGTCGGCCCCTCGCAGCGGGCAGCGGGGCGAGCCGTCGGCGCAGGAGAAGGCGTGCTGCTCTGTGAAATAGTCCCAGCGCAGCACCTCGAAGCGAGAGGCCGGGCGGGATGGTGCGGGAATGCCCACGGGCCAGGCGGCCGCCCGCTCGCCGTCAGCTGCCAGGTGGCTGGTGTTCTGGATCTCCCA
  751. s galGal2.chr7 14430361 1258 - 37338262 AGGTGCTGTTCCCCTGCTCCTGCTCAAAGAGCACCATGGCCAACTGGGAGCGGGACCCAACGCCCTCCAGGCTGCTCTGCACGCAGCGGTGGTAGATCTCCTCACTGAGCCGCGGGTTGCAGGCCTGGTGCCGGTAGTGCTGCAGCAGGGCGGGCTCCACGGCCCGGAAGACGTGAAGGTTGGAGTACTTGATGAACATATCGTAGATGTCCAGGGTCTCCAGGATGTCCTCATTCTCCTGCACGTCACCCGCCATGCGGGTGCGTGCTGCCATGTAGTCAGCATTGTAGAAGCAGGCCTCATGGAAGACATCGCGGTCAAAGCGCCCTGCATCCCGCAGGAGGTCCAGTGTGGCAGGCGGTGCCTGGTTGTGG--------------------TAGGCGACGGCGGGGTTGTAGCCCTGGAAGTGGATGGGGAAGAAGACCTGCCAGTTGTTGATGGTGTTCATCCGGCAGCGGTTCAGGAAGTCGACGGTGACCTCTGTGCCCACACCGGCCACAAAGAACAGCGTGTCCACGGGATGCTTCTTGGAGATGATGTCCATGACCTTGATTTGGGAGGGGGCATCTGTCTTCACGCTGATCCACGGGATCTTCACCTCGGCATACTTGCGCTCATACTCTGTGATCTGGGCCTTCACAGGGGCAAAGATGTCGTTCTGGGTCACCTGCTGGGCCTCGAATGGATCGTAGATGAACAGGAAGGTGAGCACCGCG---TTCTCGCTGCTCTCAAAGGCAGCTGCCGCATAGGCCTCCAGGAAGCGTGCGGCATGGTCCCGTTCGTGGGCAGTGAGCGGCAAGATGACGTTGATGCGGCTGGCCTCCGTCACATAGGGCATAGGGATGATCTCCACCTCGCTGAGGGGCCGCACCAGGTGCACGCGCTTGGTGACAGAGCGGCTGTGACCCTTCTGCGTGACCACCTCCACCTGCAGGTCCAGCGTGTACTCCATGCCGCGCGTAGGGTCAAAGCGCCGGTAGCCATTCACCAGCTGCTGCTTGCGGACATGCAGCACCGGCTGGTACTTGCGGTTCAGCTCCTCCATGGCTGTGGCCACCACGTCAGCCACATCAGCTAGGTCTGCGCCCTGCAGCTCGCATTTGGGGGAGCCATCCACGCAGGCATAGACCTGATCCTCTGTGAAGTAGTCCCAGCGCAGCACCTCGAAGCGAGTTTTGGGCTGGAATGGAGGAGGGATGCCGACAGGCCACGCGGCACTGTGGTCCCCATCTGCAGACAGGCTGCTGGCATTCTGGATCTC---
  752. s fr1.chrUn 3409912 1273 + 349519338 AAGTGCTGTTGGCCTGCTCCTGCTCAAAGAGCGCCATGGCCAGGTGGGAGCGCGAGCCCAGCCCCTGTAGGTTACTGAGGACGCAGCGGTGGTAGACGTCCTCGCTGAAGCGGGGGTTGCAGGTCCGTCTCACGTACTTCTGGATCAGAGCCGGCTCCACGGCCCTGAAGACGTGCAGCCCCGAGTACCGCACAAATATGTCGTACACGTCCATGCTCTCCAGGAGCTCCTCGTTGTCCAAGAGGTCGGCCGCCATCTTGGTCCTCGCCGTCATGTAGTCGGCGTTGTAGAAGCAGGCCTCGTCAAACACGTGGCGGTCGAAGCGGCC---GTCCCGCAGCGACTC-GGAGGCGAAGG----CGGACGAGGCGGCCGAGGGCTGCTGGTCCCGGTACATGACGGCGGGGCTGAACTCCTGGAAGTGGATGGGGAAGAACACCTGCCAGTTGCTGATGGTGTTCATCCTGCAGCGGTTCAGGAAGTCGGCGTTGACCTCCGTCCACACGCTCGCCAGGAAGAAAAGCGTGTCCACCGGGTGCTTCTTGGAGATGATGTCCATCAGCTTGACCTGCGAGGGCACCTCCGTCTTCACGCTGATCCAGGGGATCTTCACGTCCCCGTAGCGCTTCTCCACCTCTCCGATCATGGCCTTGATGCCCGCGAACACGTCGGCCTGACTGACGCGCTGCGCGTCGAACGGGTCGTAGATGAACAGGAACGTGAGCAGGACG---TTGTCGCGGGCGTCCAAGGTGTTCATCACGTACATATCCAGGAAGTTGCCGACAAAGTCCTGGTCCTGGGCGGTGACGGGGAGGATGACCTGCACCCGGGTGGCCTCCGTCACGTACGGCATGGGGATGATCTCCACGGCGCTCAGAGGGCGCAGCAGGTTCACGCGCTTGGCGATGACTTGGCTGTGGTCCTTCTGGGTGTACGCCTCCAGCGCCAGGTCCAGCACGTACTCCATGCCGCGGGTGGGGTCGAAGCGCCTGTAACCGTTGAGCAGACGCCGCTTGGTGAAGCGGAGCTGCGGCTGGTAGCGCTCGTTCAGGCGCTCCACCGCGATCTCCAACACGGCGTCGACGTCCGCGCGGTCGGCGCCTCTCATCTCGCACTTGGGCGAGCCGTCGACGCAGGAGTAGATGTGCTCTTCCGTGAAGTATTCCCAGTTTATCACCTCGAAGCGAGTTCTCGGCTTAAACGGGGAGTTGATGCCGACGGGCCACGTGACTCCGGCTTTGCCCTCGGGCGTCAGCTCGCTCAGGTTGTTGATCTGCGT
  753. s danRer1.chrUn 144716832 1261 + 367113659 AAGTACTGTTGCCCTGTTCCTGTTCAAACAGCAGCATGGCGAGCTGAGAGCGTGATCCAAGGCTATCCAGGGTGCTTTGTACACACCTCTGGTAGATTTCTTCACTAAGGCGAGGATTACACGTTTGGTAGCTGTATTTCTGATGCAGGGCCGGCTCCACTGCTCGGAAAACATGGAGGCCAGAGTATTTGACGAACATGTCATAGATATCAAGGTTCTCCAGGATCTCCTCATTCTCCAGCACATCCGATGACATCCGGGTACGGGTCGCCATGTAGTCCGAGTTGTAGAAGCAAGCTTCGGTGAAGGAGCTGCGATCGAAAAGACCAGCCTCTTTGACCAAATCCAACGCACTGGGAAGAGGCTGGTTGTGA--------------------TAAGCGATGTCAGGATTGTAGTACTGGAAGTGGATTGGAAAGAACACCTGCCAGTTGTTGATGGAGTTCATCCGACAGCGATTGAGGAACTCTGAACTGATGCTTGTTTTTACCGTCGCAATGAAGAACAACGTGTCAACCGGGTGCTTCTTGGAGATGATGTCCATGAATTTGATTTGAGACGGACTTTCGCTTTTAACACTAATCCAGGGGATTTTGACTGCAGGATATCGATGTTCGTACGTACTGATTTGTGCTTTGATGCTGGAGAAGATGTCATTCTGGTTGACTTGTTGGGCCTCTATTGGATCGTAGATGAAGAGGAACGTCAAGATCGCA---TTCTCGCTGGTTTCGAATGCATTTGTGGCATACACTTCTAAAAACTGATGAACGTAATCTCGATCTTGAAGAGTAACGGGTAAGATGATATGAACTCTAGTTGCTTCTGTAACGTAAGGCATAGGGATGATCTCGATGCGACTGAGAGGTCTTACTAAGTGGACCCTCTTGGTAATAGAGCGACTGTGTCCTTTTTGGTTAACTACCTCCAATTGTAGGTCCAGGGTGTACTCCATACCTCTGGTGGGGTCAAAACGTCTGTATCCATTGATTAGCTGTTGCTTCTTTAGGTACAACACAGGCTTGTACTTTTTATTCAGTTCACCCATTGCTGTCTCAATGACATCGGCTACGTCTAGCTTGTCAACTCCACGAAGCTCGCATTTCGGAGAGCCATCGATGCAAGAGTAAACCTGATCCTCAGTGAAGTAATCCCACCGCAGGACCTCGAATCGTGTTTTGGGCTCAAAGGGTGGATTGATTCCAACTGGCCACAAAGCACTGCGGTTGCCCTCAAAAGCCACTACACTGACATTTCTAATTTCCGC
  754. a score=133281.0
  755. s hg17.chr20 33330413 10 + 62435964 TCAGGTGAGG
  756. s panTro1.chr21 35343723 10 + 65473740 TCAGGTGAGG
  757. s mm5.chr2 155883450 10 + 181686250 TCATGTGAGG
  758. s rn3.chr14 87484150 10 + 112220682 TCATGTGAGT
  759. s canFam1.chr24 27188710 10 + 50732077 TCAGGTGAGG
  760. a score=135043.0
  761. s hg17.chr20 33513606 186 + 62435964 ATGGAGACAAGAAGCCCTG---GGTTGAACAACATGAAGCCCCAGTCACTGCAGCT---GGTACTGGAAGAGCAGGTGCTGGCACTACAGCAGCAGATGGCAGAGAATCAGGCAGCCTCCTGGCGGAAGCTGAAGAACTCCCAGGAGGCCCAGCAGAGACAAGCAACCCTTGTGAGGAAGCTGCAGGCCAAG
  762. s panTro1.chr21 35533536 186 + 65473740 ATGGAGACAAGAAGCCCTG---GGTTGAACAACATGAAGCCCCAGTCACTGCAGCT---GGTACTGGAAGAGCAGGTGCTGGCACTACAGCAGCAGATGGCAGAGAATCAGGCAGCCTCCTGGCGGAAGCTGAAGAACTCCCAGGAGGCCCAGCAGAGACAAGCAACCCTTGTGAGGAAGCTGCAGGCCAAG
  763. s mm5.chr2 156025320 183 + 181686250 ATGGAGACAGGGAGCCCCG---GGTTG---AACATGAAGCCCCAGTCCTTGCAGCT---GGTGCTGGAGGGGCAGGTGCTGGCGCTGCAGCAGCAGATGGCCGAGAATCAGGCTGCCTCCTGGCGGAAACTGAAGAACTCCCAAGAGGCCCAGAAGAGACAAGCAACCCTCGTGAGGAAGCTGCAGGCCAAG
  764. s rn3.chr5 13191474 192 - 173106704 CTGCAGCTGGAGCAGGCTGTGCGGCTGGAGACTGGGGAGCTGGAGGCACAGGAGCCCCGGGGTCTGGTGCGGCAGAGCGTGGAGCTGAGGAGGCAGCTGCAGGAGGAGCAGGCCTCCTACCGGCGCAAGCTACAGGCCTACCAGGAGGGCCAGCAGCGGCAGGCCCAGCTAGTGCAGCGGCTGCAGGCCAAG
  765. s canFam1.chr24 27350813 186 + 50732077 ATGGAGACGCGAGGCCCTG---GGTTGAACAATATGAAGCCCCAGTCACTGCAGTT---GGTGCTGGAGGAGCAAGTACTAGCACTACAGCAGCAGATGGCAGAGAACCAAGCAGCCTCCTGGCGGAAGCTGAAGAACTCCCAGGAGGCCCAGCAGAGGCAAGCAACCCTCGTGAGGAAGCTGCAGGCCAAG
  766. a score=79158.0
  767. s hg17.chr20 33579500 27 + 62435964 CTAGGGAACCAGACCATCTTCCAAAAT
  768. s panTro1.chr21 35599874 27 + 65473740 CTAGGGAACCAGACCATCTTCCAAAAT
  769. s mm5.chr2 156065808 27 + 181686250 CTAGGGAATCAGACCATCTTCCAAAAT
  770. s rn3.chr3 146317055 26 + 170969371 CTAGGGAATCAGA-CGTCTTCCAAAAT
  771. s canFam1.chr24 27411797 27 + 50732077 CGAGGGCACTGGACCACCCTCCAAAAT
  772. a score=183752.0
  773. s hg17.chr20 33593260 88 + 62435964 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCCAAGACTTTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACCG
  774. s panTro1.chr21 35611606 88 + 65473740 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCCAAGACTTTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACCG
  775. s mm5.chr2 156071489 88 + 181686250 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCTAAGACTCTGGAGGACTTCCGGGTCAAGACCTGCGGGGGTGCCACGG
  776. s rn3.chr3 146322266 88 + 170969371 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCTAAGACTCTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACGG
  777. s canFam1.chr24 27422888 88 + 50732077 ATGGAGGCGCTGGGGAAGCTCAAGCAGTTCGATGCCTACCCCAAGACTCTGGAGGACTTCCGGGTCAAGACCTGCGGGGGCGCCACGG
  778. s fr1.chrUn 60145707 88 - 349519338 ATGGATACTTTTAGCAAACTGAAACAGTTTGACGCTTATCCCAAAACTCTGGAGGATTTTAGGGTGAAGACATGGGGCGGTGCGACCG
  779. s danRer1.chr20 18851405 88 + 31913010 ATGGATGCGTTAAATAAACTCAAACAATTTGACGCGTATCCGAAAACTCTAGAGGACTTCAGGATCAAAACATGTGGAGGAGCCACGG
  780. a score=802859.0
  781. s hg17.chr21 32707032 160 + 46944323 ATGCTTCTGCCGGGACGCGCACGCCAACCGCCGACGCCCCAGCCCGTGCAGCATCCCGGCCTCCGCCGGCAGGTAGAGCCGCCGGGGCAGCTCCTGCGCCTCTTCTACTGCACTGTCCTGGTCTGCTCCAAAGAGATCTCAGCGCTCACCGACTTCTCTG
  782. s panTro1.chr22 32678009 160 + 47338174 ATGCTTCTGCCGGGACCCGCACGCCAACCGCCGACGCCCCAGCCCGTGCAGCATCCCGGCCTCCGCCGGCAGGTAGAGCCGCCGGGGCAGCTCCTGCGCCTCTTCTACTGCACTGTCCTGGTCTGCTCCAAAGAGATCTCAGCGCTCACCGACTTCTCTG
  783. s mm5.chr16 91265497 160 + 98801893 ATGCTCCTGCCAGGACACCCGCGTCCACCACCCGCGCCCCAATCGGCGCAGAATCAGGGCCTCCGCAGGCAGGTAGAGCCTCCGGGGCAGCTTCTGCGCCTGTTCTACTGCACGGTCCTAGTGTGCTCCAAAGAGACCTCCGCGCTCACCGATTTCTCTG
  784. s rn3.chr11 30818860 160 + 87800381 ATGGTCTTGCCCGGACACCCGCGTCTGCCGCCCGGGCCACAGCCACCGCAGAATCCCGGCCTCCGCAGGCAGGTAGAGCCTCCAGGGCAGCTTCTGCGCCTCTTCTACTGCACGGTCCTAGTGTGCTCCAAAGAGACCTCCGCGCTCACCGATTTTTCCG
  785. s canFam1.chr31 30192155 160 + 41215879 ATGCTTCTGCCTGGACAcgcgcgcccgccgcccgcgccgcagcccgcgcAGCATCCCGGACTCCGCCGGCAGGTAGAGCCTCCCGGGCAGCTCCTGCGCCTCTTCTACTGCACCGTCCTGGTCTGTTCCAAGGAGATCGCGGCGCTCACGGACTTCTCCG
  786. a score=93692.0
  787. s hg17.chr21 32869641 381 + 46944323 TCAGATTCGGCCCTGAAGGGCCACGCAGACCTCGGCCAAGGATGGGAAGGAGTCCAGGTGCCAGGCAGCCCAGGGCGAGTGGTGCCCACAGGCTTGGGCTGTGCTGTGCATAAGGGCCACACCTGAAGCTCGGCCACACCTGAGGCTCGGCCACCACATAGGCCCCGTTTCTTTACCAAGATAGGTTCCTGCAGAGGTCGTGAAGCTGCTGTGGTCATTTGCTGGCAGCGACGTGAAGATAGAATTCTTTCCTGACTCAACCAGGGGCACTCTCGTCTCCTCCCCGTGAGACCCGCAATGCAGGAAGCACCCACAGCTGCATGGACAGAACTGGGGCCTGGGAAAGAGGCCAGGAAGGTGCCAGATGAGAGGGCGCTCCAT
  788. s panTro1.chr22 32842524 381 + 47338174 TCAGATTCGGCCCTGAAGGGCTACGCAGACCTCGGCCAAGGATGGGAAGGAGTCCAGGTGCCAGGCAGCCCAGGGCGAGTGGTGCCCACAGGCTTGGGCTGTGCTGTGCATAAGGGCCACACCTGAAGCTCGGCCACACCTGAGGCTCAGCCACCAGATAGGCTCTGTTTCTTTACCGAGATAGGTTCCTGCAGAGGTCGTGAAGCTGCTGTGGTCATTTGCTGGCAGCGACGTGAAGATAGAATTCTTTCCTGACTCAACCAGGGGCACTCTTGGCTCCTCCCCGTGAGACCCGCAATGCAGGAAGCACCCACAGCTGCATGGACAGAACTGGGGCTTGGGAAAGAGGCCAGGCAGGTGCCAGATGAGAGGGCGCTCCAT
  789. a score=62310.0
  790. s hg17.chr21 33321040 51 + 46944323 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCAGAGCCC
  791. s panTro1.chr22 33286911 51 + 47338174 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCAGAGCCC
  792. s mm5.chr16 91660624 51 + 98801893 ATGGACTCGGACGCCAGCCTGGTGTCTAGTCGCCCATCGTCCCCAGAACCC
  793. s rn3.chr11 31244293 51 + 87800381 ATGGACTCGGACGCCAGCCTGGTGTCTAGTCGCCCGTCGTCGCCAGAACCC
  794. s canFam1.chr31 30690225 51 + 41215879 ATGGACTCGGACGCCAGCCTGGTGTCCAGTCGCCCGTCGTCACCAGAGCCC
  795. s galGal2.chr3 53622667 51 + 108638738 ATGAATTCTGACTCCAGCTCCGTCTCCAGCAGAGCCTCCTCGCCGGACATG
  796. s fr1.chrUn 314816718 51 - 349519338 ATGGACTCAGATACGAGCCGCATGTCGAGCAGACCCTCCTCCCCCGAGGTG
  797. a score=19085.0
  798. s hg17.chr21 33321091 26 + 46944323 GATGACCTTTTTCTGCCGG----------------------------CCCGGAG
  799. s panTro1.chr22 33286962 26 + 47338174 GATGACCTTTTTCTGCCGG----------------------------CCCGGAG
  800. s mm5.chr16 91660675 26 + 98801893 GATGATCTTTTTCTGCCCG----------------------------CCCGGAG
  801. s rn3.chr11 31244344 26 + 87800381 GATGATCTTTTTCTGCCGG----------------------------CCCGGAG
  802. s canFam1.chr31 30690276 26 + 41215879 GATGACCTGTTTCTGCCGG----------------------------CCCGGAG
  803. s galGal2.chr3 53622718 54 + 108638738 GACGAGATGTACCTGCGGGAGcaccgccaccaccaccaccaccaccaccCGGAG
  804. s fr1.chrUn 314816769 22 - 349519338 GACGACATCTTCATGTCCA----------------------------GCC----
  805. s danRer1.chr24 18057443 31 + 23152154 CATCAGCTGTTTCGAGCAA-----------------------AACGACCCGGAC
  806. a score=-194.0
  807. s hg17.chr21 33321117 3 + 46944323 TAA
  808. s panTro1.chr22 33286988 3 + 47338174 TAA
  809. s mm5.chr16 91660701 3 + 98801893 CAA
  810. s rn3.chr11 31244370 3 + 87800381 CAA
  811. s canFam1.chr31 30690302 3 + 41215879 CAA
  812. s fr1.chrUn 314816791 3 - 349519338 TGA
  813. s danRer1.chr24 18057475 2 + 23152154 CG-
  814. a score=36.0
  815. s hg17.chr21 33321117 7 + 46944323 TAAGGGC
  816. s fr1.chrUn 314816791 7 - 349519338 TGAAGAC
  817. s danRer1.chr24 18057474 7 + 23152154 CCGGTGC
  818. a score=260.0
  819. s hg17.chr21 33321120 4 + 46944323 GGGC
  820. s panTro1.chr22 33286991 4 + 47338174 GGGC
  821. s mm5.chr16 91660704 4 + 98801893 GGGG
  822. s rn3.chr11 31244373 4 + 87800381 GGGG
  823. s canFam1.chr1 91988693 4 - 124897793 catc
  824. s fr1.chrUn 314816794 4 - 349519338 AGAC
  825. s danRer1.chr24 18057477 4 + 23152154 GTGC
  826. a score=24176.0
  827. s hg17.chr21 33321124 110 + 46944323 AGCAGCGGCAGCGCCTTCACTGGGGGCACCGTGTC--------CTCGTCCACCCCGAGTGACTGCCCGCCGGAGCT----GAGCGCCGAGCTGCGCG-GCGCTATGGGCTCTGCGGGCGCGCA
  828. s panTro1.chr22 33286995 110 + 47338174 AGCAGCGGCAGCGCCTTCACTGGGGGCACCGTGTC--------CTCGTCCACCCCGAGCGACTGCCCGCCGGAGCT----GAGCGCCGAGCTGCGCG-GCGCTATGGGCTCTGCGGGCGCGCA
  829. s mm5.chr16 91660708 110 + 98801893 GGAAGCAGCAGCGGCTTCACAGGAGGGACTGTGTC--------CTCGTCCACGCCGAGCGACTGCCCGCCAGAGCT----GAGCTCCGAGCTACGAG-GGGCCATGGGCGCGTCAGGCGCGCA
  830. s rn3.chr11 31244377 110 + 87800381 GGAAGCAGCAGCGGCTTCACAGGAGGAACCGTGTC--------CTCATCCACGCCGAGCGACTGCCCGCCAGAGCT----GAGCTCCGAGCTGCGAG-GAGCCATGGGCACGGCGGGCGCGCA
  831. s canFam1.chr1 91988697 97 - 124897793 accaccgccaccaccaccaccaGGAGAGCCGTCTCAACTCGGTCTCCTCCACTCAGGGCGACATGGTGCAGAAGAT----GCCCGGGGAG---------------AGTCTCT-------CGCG
  832. s galGal2.chr3 53622772 75 + 108638738 ---------AGCCGCCTCA--------ACCCCGT---------CTCTTCCACGCAGGGCGACCTGGTGCAGAAGAT----GGCCGGGGAG---------------GGCCTGGCCCGGGGC---
  833. s fr1.chrUn 314816798 83 - 349519338 --ATCCGTGCACGGCTTCTCCGGA---ACCGTGTC--------C---TCCACGCAGAGCGACTCCCCGCCGGACAT-------CGGGAGCCTGCGC---------GGCCTCTCCG--------
  834. s danRer1.chr24 18057481 91 + 23152154 AGCCCGGGGGGCG-----AGCGGGCACGCTGGGTC---------------------------TGCCGACCGGATCTTTGTGTGTGAAATACGGCGAGAGCGCCAACAGGACTTCAGGCGCGGA
  835. a score=6480.0
  836. s hg17.chr21 33321234 22 + 46944323 TCCTGGGGACAAGCTAGGAGGC
  837. s panTro1.chr22 33287105 22 + 47338174 TCCTGGGGACAAGCTAGGAGGC
  838. s mm5.chr16 91660818 22 + 98801893 TCCCGGGGACAAACTGGGCGGC
  839. s rn3.chr11 31244487 22 + 87800381 TCCCGGGGACAAACTGGGCGGC
  840. s canFam1.chr1 91988794 22 - 124897793 GGCCGGCGCCAAGGCCACGGGC
  841. s galGal2.chr3 53622847 18 + 108638738 ----GGCCCCAAGGCGCAGGGG
  842. s fr1.chrUn 314816881 12 - 349519338 --CCACTGACGAGG--------
  843. a score=215890.0
  844. s hg17.chr21 33321256 192 + 46944323 AGTGGCTTCAAGTCATCCTCGTCCAGCACCTCGTCGTCTACGTCG-TCGGCGGCTGCGTCGTCCACCAAGAAGGACAAGAAGCAAATGACAGAGCCGGAGCTGCAGCAGCTGCGTCTCAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGATGGCCTCCGCGAGGTCATGCCG
  845. s panTro1.chr22 33287127 192 + 47338174 AGTGGCTTCAAGTCATCCTCGTCCAGCACCTCGTCGTCTACGTCG-TCGGCGGCTGCGTCGTCCACCAAGAAGGACAAGAAGCAAATGACAGAGCCGGAGCTGCAGCAGCTGCGTCTCAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGATGGCCTGCGCGAGGTCATGCCG
  846. s mm5.chr16 91660840 192 + 98801893 GGTGGCTTCAAGTCATCTTCCTCCAGCACCTCCTCGTCCACGTCC-TCGGCGGCCACGTCTTCCACCAAGAAAGACAAGAAGCAGATGACTGAGCCCGAGCTGCAGCAGCTGCGCCTGAAGATCAACAGCCGCGAACGCAAGCGCATGCACGACCTCAACATCGCCATGGACGGCCTGCGGGAGGTCATGCCT
  847. s rn3.chr11 31244509 192 + 87800381 GGTGGCTTCAAGTCATCTTCCTCCAGCACCTCCTCGTCCACGTCG-TCGGCGGCCACGTCTTCCACCAAGAAAGATAAGAAGCAGATGACTGAGCCCGAGCTGCAGCAGCTGCGCCTGAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGACGGCCTGAGGGAGGTCATGCCG
  848. s canFam1.chr1 91988816 138 - 124897793 GAGAGTAGCAAGT-------------------------------------------------------ACAAAATCAAGAAGCAGCTGTCGGAGCAGGACCTACAGCAATTACGGCTGAAGATCAACGGCCGCGAGCGCAAGCGGATGCACGACCTCAACCTAGCCATGGACGGGCTGCGCGAGGTCATGCCC
  849. s galGal2.chr3 53622865 138 + 108638738 GAGGGCGGCAAGT-------------------------------------------------------ACAAGATCAAGAAGCAGCTCTCGGAGCAGGACCTGCAGCAGCTGCGGCTCAAGATCAACGGGCGGGAGCGCAAGCGGATGCACGACCTCAACCTGGCCATGGACGGGCTGCGGGAGGTGATGCCC
  850. s fr1.chrUn 314816893 149 - 349519338 ------------------------AGTCCCTCGCCATCCG--------------------GCTCGCAAAGAAAGATCGGAAAGTGCTTTCGGACAACGAACTGCAGACGATCCGCCTCAAAATCAACAGCCGCGAGAGGAAAAGGATGCACGACCTCAACGTGGCCATGGACGGACTCCGGGAAGTCATGCCC
  851. s danRer1.chr25 10119771 182 - 17189730 AGCTGCTGCAGAAGATGGCCAGCGAGCACCTC----TCCAAGACGCCCAGCGGCAGCAAGT-------ACAAGCTGAAGAAGCAGGTGACCGAGCATGAGATCCAGCAGCTGCGGCTCAAGATCAACGGGAGGGAGCGCAAGCGCATGCACGACCTGAATTTGGCGATGGACGGGCTCCGAGAGGTCATGCCG
  852. a score=323301.0
  853. s hg17.chr21 33321448 176 + 46944323 TACGCACACGGCCCTTCGGTGCGCAAGCTTTCCAAGATCGCCACGCTGCTGCTGGCGCGCAACTACATCCTCATGCTCACCAACTCGCTGGAGGAGATGAAGCGACTGGTGAGCGAGATCTACGGGGG------------C------CACCACGCTGGCTTCCACCCGTCGGCCTGCGGCGGCCTGGCGCACTC
  854. s panTro1.chr22 33287319 176 + 47338174 TACGCACACGGCCCTTCGGTGCGCAAGCTTTCCAAGATCGCCACGCTGCTGCTGGCGCGCAACTACATCCTCATGCTCACCAACTCGCTGGAGGAGATGAAGCGACTGGTGAGCGAGATCTACGGGGG------------C------CACCACGCTGGCTTCCACCCGTCGGCCTGCGGCGGCCTGGCGCACTC
  855. s mm5.chr16 91661032 176 + 98801893 TACGCGCACGGGCCGTCGGTGCGCAAGCTCTCCAAGATCGCCACGCTGCTGCTGGCGCGAAACTACATCCTCATGCTCACCAACTCGCTGGAGGAGATGAAGCGACTGGTGAGCGAGATCTACGGGGG------------T------CACCACGCCGGCTTCCACCCATCGGCCTGTGGCGGGCTGGCACACTC
  856. s rn3.chr11 31244701 176 + 87800381 TACGCGCACGGCCCGTCGGTGCGCAAGCTCTCCAAGATCGCCACGCTGCTGCTGGCGCGAAACTACATCCTGATGCTCACCAACTCGCTGGAGGAGATGAAGAGACTGGTGAGCGAGATTTACGGGGG------------T------CACCACGCCGGCTTCCACCCGTCGGCCTGTGGCGGGCTGGCACACTC
  857. s canFam1.chr1 91988954 167 - 124897793 TACGCGCACGGGCCCTCGGTGCGCAAGCTCTCCAAGATCGCCACTCTCCTGCTGGCCAGAAACTACATCCTCATGCTCACCAGCTCCCTGGAGGAGATGAAGAGGTTGGTTGGCGAGATCTACGGGGG------------C------CACCACTCTGCCTTCCA---------CTGCGGGACCGTGGGCCACTC
  858. s galGal2.chr3 53623003 167 + 108638738 TACGCGCACGGCCCCTCCGTCCGGAAACTCTCCAAAATCGCCACCCTGCTGCTGGCCAGAAACTACATCCTGATGCTCACCAGCTCCCTGGAGGAGATGAAGCGCCTGGTGGGGGAGATCTACGGTGG------------C------CACCACTCGGCCTTCCA---------CTGCGGCACCGTGGGCCACTc
  859. s fr1.chrUn 314817042 182 - 349519338 TACGCGCACGGACCGTCGGTGCGCAAACTCTCCAAAATCGCCACGCTGCTCCTGGCGAGAAATTACATCCTGATGCTGAGCAACTCGCTGGAAGAGATGAAGCGGCTGGTGAGCGAGATCTACGGCAG------------CGGCGCACACCACGGTGGCTTCCACCCGACAGCTTGTGGGACAATGACACACGC
  860. s danRer1.chrNA 310476113 188 - 390413307 TACGCTCACGGGCCGTCTGTGCGCAAGCTCTCTAAAATAGCCACTCTGCTGCTCGCGCGCAACTACATCCTTATGCTGAGCAACTCGCTGGAGGAGATGAAGCGGCTCGTGAGCGAGATCTACGGCGGAGGGAGCGGGGCC------CATCACGCCGGTTTCCATCCGTCCAGTTGTGGCACTCTTACGCACGC
  861. a score=23510.0
  862. s hg17.chr21 33321624 71 + 46944323 CGCGCCCCTGCCC-GCCGC-----------CACCGCGCACCCGGCAGCAGCAG-CGCACGCCGCACATCACCCCGCGGTGCACC
  863. s panTro1.chr22 33287495 71 + 47338174 TGCGCCCCTGCCC-GCCGC-----------CACCGCGCACCCGGCAGCAGCAG-CGCACGCCGCACATCACCCCGCGGTGCACC
  864. s mm5.chr16 91661208 71 + 98801893 GGCGCCTCTACCC-ACCGC-----------CACGGCGCACCCCGCGGCCGCCG-CGCACGCCGCGCACCACCCGGCCGTGCACC
  865. s rn3.chr11 31244877 71 + 87800381 GACGCCTCTACCC-ACCGC-----------CACGGCGCACCCTGCAGCCGCCG-CGCACGCCGCGCACCACCCGGCGGTGCATC
  866. s canFam1.chr1 91989121 45 - 124897793 CGC-----------------------------CGGC-CACCCAGCACACGCCG-CCAACGCCGTGCACC------CGGTGCA--
  867. s galGal2.chr20 5296387 84 - 13506680 CACGGCCTTGCCCGGCTGCCCCGAGAAATGCACTGCCTTCACAGGAGCCGCCTCCGCGCTCTGCAAACACTGCAGCGACAAGCC
  868. s fr1.chrUn 314817224 56 - 349519338 GGGGCCCGTGCCGGGACAC-----------CCGAGCACAT--------------CTCACAGCTCACACC---CGGCGGTGCACC
  869. s danRer1.chrNA 310476301 62 - 390413307 GGCGGCGGCTCC--GTTAC-------------CGGGTCACCCCGCTGCTGTCT-CGCATTCCTCTCACC------CGGTGCACC
  870. a score=9256.0
  871. s hg17.chr21 33321695 9 + 46944323 A-CCCCATCc
  872. s panTro1.chr22 33287566 10 + 47338174 AACCCCATCc
  873. s mm5.chr16 91661279 9 + 98801893 A-CCCCATCC
  874. s rn3.chr11 31244948 9 + 87800381 A-CCCCATCC
  875. s canFam1.chr1 91989166 8 - 124897793 --CCCCATCC
  876. s fr1.chrUn 314817280 9 - 349519338 A-CCCGCTCC
  877. s danRer1.chrNA 310476363 9 - 390413307 A-TCCTCTGC
  878. a score=14345.0
  879. s hg17.chr21 33321704 48 + 46944323 tgccgcccgccgccgcagcggctgctgccgccgctgcagccgcggctg
  880. s panTro1.chr22 33287576 48 + 47338174 tgccgcctgccgccgcagcggctgctgccgccgctgcagccgcggctg
  881. s mm5.chr16 91661288 48 + 98801893 TCCCTCCCGCAGCCGCCGCCGCCGCCGCAGCCGCCGCCGCCGCAGCGG
  882. s rn3.chr11 31244957 48 + 87800381 TCCCTCCAGCAGCCGCGGCCGCAGCCGCCGCAGCCGCTGCCGCAGCGG
  883. s canFam1.chr1 91989174 39 - 124897793 TG------GGCGGCGCGCTCTCGTCCGGCAACGCCTC-GTCGCCGC--
  884. a score=4230.0
  885. s hg17.chr21 33321752 3 + 46944323 TGT
  886. s panTro1.chr22 33287624 3 + 47338174 TGT
  887. s mm5.chr16 91661336 3 + 98801893 TGT
  888. s rn3.chr11 31245005 3 + 87800381 TGT
  889. s canFam1.chr1 91989213 3 - 124897793 TGT
  890. s fr1.chrUn 314817304 3 - 349519338 TGT
  891. a score=2889.0
  892. s hg17.chr21 33321755 6 + 46944323 CCAGCG---
  893. s panTro1.chr22 33287627 6 + 47338174 CCAGCG---
  894. s mm5.chr16 91661339 6 + 98801893 CCAGCG---
  895. s rn3.chr11 31245008 6 + 87800381 CCAGCG---
  896. s canFam1.chr1 91989216 6 - 124897793 CCGCCG---
  897. s fr1.chrUn 314817307 6 - 349519338 CCACGG---
  898. s danRer1.chrNA 310476387 9 - 390413307 CCACCGCAG
  899. a score=65057.0
  900. s hg17.chr21 33321761 77 + 46944323 CCTCTCTGCCCGGATCCGGGCTGCCGTCGGTCGGCTCCATCCGTCCACCGCACGGCCTACTCAAGTCTCCGTCTGCT
  901. s panTro1.chr22 33287633 77 + 47338174 CCTCTCTGCCCGGATCCGGGCTGCCGTCGGTCGGCTCCATCCGTCCACCGCACGGCCTACTCAAGTCTCCGTCTGCT
  902. s mm5.chr16 91661345 77 + 98801893 CCTCTCTACCGGGCTCCGGGCTGTCCTCGGTCGGATCCATCCGGCCTCCGCACGGCCTGCTCAAGTCACCGTCGGCA
  903. s rn3.chr11 31245014 77 + 87800381 CTTCTCTGCCGGGCTCCGGGCTGTCCTCGGTCGGATCCATCCGGCCTCCTCACGGCCTGCTCAAGTCTCCATCGGCA
  904. s canFam1.chr1 91989222 60 - 124897793 CCTCGCTGCCGG---------------CCATCGGCACCATTCGACCTCCCCACTCTCTGCTCAAGGCGCCCTCCA--
  905. s galGal2.chr3 53623259 74 + 108638738 CGTCGCTGCCAG---CCTCGCTGCCGGCCCTGGGCACCATCCGGCCGCCCCACTCCCTGCTGAAGACCCCCTCCACT
  906. s fr1.chrUn 314817313 77 - 349519338 CGTCTCTGTCGGCACCTGGCATCGCCGCCGTCACATCTGTCAGACCTCATCATGGACTCCTCAAAGCTCCCGGTACC
  907. s danRer1.chrNA 310476396 68 - 390413307 CATCTCTTTCCGGGACGGGGCTTTCAGCCGTCA---------GGCCGCATCACGGACTCCTCAAAGCCCCGTCAGCC
  908. a score=100.0
  909. s hg17.chr21 33321838 1 + 46944323 g
  910. s danRer1.chrNA 310476464 1 - 390413307 G
  911. a score=16973.0
  912. s hg17.chr21 33321838 36 + 46944323 gccgcggccgccccgctggggggcgggggcggcggc
  913. s panTro1.chr22 33287710 36 + 47338174 GCCGCAgccgccccgctggggggcgggggcggcggc
  914. s mm5.chr16 91661422 36 + 98801893 GCCGCAGCCGCCCCTCTCGGAGGCGGGGGTGGAGGC
  915. s rn3.chr11 31245091 36 + 87800381 GCCGCGGCCGCCCCTCTCGGAGGCGGGGGTGGAGGC
  916. s canFam1.chr1 91989282 15 - 124897793 --CGCCGCCGGCCCT-------------------GC
  917. a score=-1380.0
  918. s hg17.chr21 33321838 36 + 46944323 gccgcggccgccccgctggggggcgggggcggcggc
  919. s fr1.chrUn 314817391 1 - 349519338 G-----------------------------------
  920. a score=627.0
  921. s hg17.chr21 33321874 1 + 46944323 A
  922. s panTro1.chr22 33287746 1 + 47338174 A
  923. s mm5.chr16 91661458 1 + 98801893 A
  924. s rn3.chr11 31245127 1 + 87800381 A
  925. s canFam1.chr1 91989297 1 - 124897793 A
  926. s galGal2.chr3 53623346 1 + 108638738 A
  927. s fr1.chrUn 314817392 1 - 349519338 T
  928. a score=101521.0
  929. s hg17.chr21 33321875 67 + 46944323 GTGGGGC----GAGCGGGGGCTTCCAGCACTGGGG---------C---GGCATGCCCTGCCCCTGCAGCATGTGCCAGGTGCC
  930. s panTro1.chr22 33287747 67 + 47338174 GTGGGGC----GAGCGGGGGCTTCCAGCACTGGGG---------C---GGCATGCCCTGCCCCTGCAGCATGTGCCAGGTGCC
  931. s mm5.chr16 91661459 67 + 98801893 GCGGTGG----CAGCGGTGGCTTCCAGCACTGGGG---------C---GGCATGCCGTGCCCCTGCAGCATGTGCCAGGTGCC
  932. s rn3.chr11 31245128 67 + 87800381 GCGGTGG----CAGCGGTGGCTTCCAGCACTGGGG---------T---GGCATGCCGTGCCCCTGCAGCATGTGCCAGGTGCC
  933. s canFam1.chr1 91989298 63 - 124897793 GCTGG--------GCAGCGGCTTCCAGCACTGGGC---------C---GGGCTGCCCTGCCCCTGCACCATCTGCCAGATGCC
  934. s galGal2.chr3 53623347 63 + 108638738 GCTCG--------GCGGAGGCTTCCAGCACTGGGC---------C---GGCTTGCCGTGCCCCTGCACCATCTGCCAGGTGCC
  935. s fr1.chrUn 314817393 80 - 349519338 GCGGGGCCCCTGGGAAGCAGTTTCCAGCACTGGGGTGTGGGCACC---GGGATGCCTTGTCCGTGCAGCATGTGCCAAGTTCC
  936. s danRer1.chrNA 310476467 74 - 390413307 GCTGGGCCTCTGGGCGCGGGTTTCCAGCACTGGGG---------TGCGGGGATCCCTTGTCCGTGTAGCATGTGCCAGGTGCC
  937. a score=77095.0
  938. s hg17.chr21 33321942 70 + 46944323 GCCGCCGCACCACCACGTGTCGGCTATGGGCGCCGGCAGCCTGCCGCGCCTCACCTCCGACGC------------CAAG-TGA
  939. s panTro1.chr22 33287814 70 + 47338174 GCCGCCGCACCACCACGTGTCGGCCATGGGCGCCGGCAGCCTGCCGCGCCTCACCTCCGACGC------------CAAG-TGA
  940. s mm5.chr16 91661526 70 + 98801893 GCCGCCGCACCACCACGTGTCGGCTATGGGCGCCGGCACCTTGCCGCGCCTCACCTCCGACGC------------CAAG-TGA
  941. s rn3.chr11 31245195 70 + 87800381 GCCGCCACACCACCACGTGTCGGCTATGGGCGCCGGCACCTTGCCGCGCCTCACCTCCGACGC------------CAAG-TGA
  942. s canFam1.chr31 30691121 70 + 41215879 GCCGCCGCACCCCCACGTGCCGGCCATGGGCGGGGGCAGCCTGCCGCGCCTTGCCTCCGACGC------------CAAG-TGA
  943. s galGal2.chr3 53623413 76 + 108638738 CCCGCCGCACCTC------TCTGCCCTCTCCGCCTCCGGCATGGGCCGGATCTCGGCGGACACCAAGGACCTGCTCAAG-TGA
  944. s fr1.chrUn 314817473 65 - 349519338 CCCTCCACACGTC------CCGGCCATCAGTACCGTTACCATGTCAAGGCTGTCCAGCGACTC------------CAAGTTGA
  945. s danRer1.chrNA 310476541 64 - 390413307 TCCGTCTCACGTT------CCCGGTATGAGCGCCGTCAGCATGCCACGGCTGACCAGTGACTC------------AAAA-TAA
  946. a score=113636.0
  947. s hg17.chr21 33744994 2 + 46944323 TC
  948. s panTro1.chr22 33720891 2 + 47338174 TC
  949. s mm5.chr16 92040468 2 + 98801893 TC
  950. s rn3.chr11 31574511 2 + 87800381 TC
  951. s canFam1.chr31 31078278 2 + 41215879 TC
  952. a score=61167.0
  953. s hg17.chr21 33744996 44 + 46944323 AGGTCCATAGCTCTTCGGTTCTTCCAAATTTGTAGATCAGAGTG
  954. s panTro1.chr22 33720893 44 + 47338174 AGGTCCATAGCTCTTCGGTTCTTCCAAATTTGTAGATCAGAGTG
  955. s mm5.chr16 92040470 44 + 98801893 AGGCCCAGAGCTCTTCAGTTCTTCCAAATTTGTAGATCAGAGTG
  956. s rn3.chr11 31574513 44 + 87800381 AGGCCCAGAGCTCTTCAGTTCTTCCGAATTTGTAGATCAGAGTG
  957. s canFam1.chr31 31078280 44 + 41215879 AGGTCCAAAGCTCTTCAGTTCTTCCAAATTTGTAGATCAGAGTG
  958. s fr1.chrUn 305707709 44 + 349519338 AGCCCCATAAATCTTCAGTGCGTCCGAACTTGTAGATCAGGGTG
  959. a score=71764.0
  960. s hg17.chr22 30120223 42 + 49554710 ATGAGCAGCACCTTAGCTAAGATCGCGGAGATAGAAGCAGAG
  961. s panTro1.chr23 30222612 42 + 50034486 ATGAGCAGCACCTTAGCTAAGATCGCGGAGATAGAAGCAGAG
  962. s mm5.chr11 118487759 42 - 121648857 ATGAGCGGGACCTTAGCGAAGATCGCGGAGATCGAAGCCGAG
  963. s rn3.chr14 28338530 42 - 112220682 ATGAGTGGGACCTTAGCGAAGATCGCGGAGATCGAAGCCGAG
  964. s canFam1.chr26 27465575 42 + 41009621 ATGAGCAGCACCTTAGCGAAGATCGCGGAGATCGAAGCCGAG
  965. s galGal2.chr15 3499721 42 - 12438626 ATGAGTGGGACTCTGGCGAAGATCGCGGAGATCGAGGCTGAG
  966. s fr1.chrUn 242087985 39 - 349519338 ATGAGT---ATTCTTGCTAAAATAGCAGAGATTGAAAATGAG
  967. a score=249684.0
  968. s hg17.chr22 30160419 187 + 49554710 TCACTGTCGGTATTCCAATTCATCTACACTGATAACTTTGGCG---GGCATGGAGGGCAGGGGTTGCTGTAGCACATCTGAGCCAAACCATTTGGCAAGGCCCACAGGGGAGCT------GCTCCTCTGGCTGGGGCGATGCTCCAGCTGGGA--GTGCATGTGGGGCAGGCCTGACCGGCTGGGCACGTTCTGAGGG
  969. s panTro1.chr23_random 7588856 187 - 16744317 TCACTGTCGGTATTCCAATTCATCTACACTGATAACTTTGGCG---GGCATGGAGGGCAGGGGTTGCTGTAGCACATCTGAGCCAAACCATTTGGCAAGGCCCACAGGGGAGCT------GCTCCTCTGGCTGGGGCGATGCTCCAGCTGGGA--GTGCATGTGGGGCAGGCCTGACCGGCTGGGCACGTTCTGAGGG
  970. s mm5.chr11 118509980 187 - 121648857 TCACTGTCTATATTCCAGTTCATCTACACTGATGACTTTGGTG---GGCATGGAGGGCAGAGGCTGCTGTAGCACATCTGAGCCAAACCATTTGGCAAGGCCCACAGGGGAGCT------GCTCCTTTGGCTGGTACGATGCTCCAGCTGGGA--GTGCATGTGGGGCATGCCCGACCGGCTGGGTACATTCTGAGGA
  971. s rn3.chr14 28360090 187 - 112220682 TCACTGTCTATATTCCAGTTCATCTACACTGATGACTTTGGTG---GGCATGGAGGGCAGAGGCTGCTGTAGCACATCTGAGCCAAACCACTTGGCAAGACCCACGGGGGAGCT------GCTCCTTTGGCTGGTGCGATGCTCCAGCTGGGA--GTGCATATGGGGCAGGCCTGACCGGCTGGGTACATTCGGAGGA
  972. s canFam1.chr26 27493563 187 + 41009621 TCATTGACGGTACTCCAATTCATCTACACTGATGACTTTGGCA---GGCATGGAGGGCAGGGGTTGCTGTAGCACATCTGAGCCAAACCACTTAGCGAGGCCTACTGGGGAGCT------GCTCCTCTGGCTGGGGCGATGTTCCAGCTGGGA--GTGCACGTGGGGCAGGCCTGACCTGGTGGGCACATTCTGAGGG
  973. s galGal2.chr15 3506922 187 - 12438626 TCACTGCCGATATTCCAGTTCATCTACACTGATGACTTTGGAT---GGCATGGAAGGGAGAGGCTGCTGCAAGACATCTGAACCAAACCACTTTGCAAGGCCAATGGGAGAGCC------ACTTCTCTGGCTGGGACGATGGTCGAGCTGCGC--GTGCCCATGAGATAATCCAGTCCGAGACGGCACATTCTGAGGT
  974. s danRer1.chrNA 320160139 177 + 390413307 TCACTGGCGGAACTCGAGCTCATCAACACTGATCACTTTAGTGGAAGGCATGGAAGGGAGAGGCTGCTGCAGCATGTCTGAACCAAACCACTTGGCCAGGCCCAGAGGGGGACTTGCACCTCTCCGCTGGTTTGTCCGATG--------GGGACCGTGGCTCTGGGAC-------------TGGGGGCCTCCTGAGGG
  975. a score=49183.0
  976. s hg17.chr22 30160606 55 + 49554710 GTTGTCTGAACGCTGACAGCTGCTGCATGGGAACCAGAGCCTGGAGGATGCAGAA
  977. s panTro1.chr23_random 7589043 55 - 16744317 GTTGTCTGAACGCTGACAGCTGCTGCATGGGAACCAGAGCCTGGAGGATGCAGAA
  978. s mm5.chr11 118510167 52 - 121648857 ---GTCTGAACGCTGATAGCTGCTGCCTGGGAACTAGAGCCTGGAGGATGCAGAA
  979. s rn3.chr14 28360277 52 - 112220682 ---GTCTGAACGTTGATAGCTGCTGCCTGGGAACTAGAGCCTGGAGGATGCAGAA
  980. s canFam1.chr26 27493750 55 + 41009621 GTTGTCTGAACGCTGACAGCTGCTGCCGGGGAACCAGAGCCTGGAGGATGAAGAA
  981. s galGal2.chr15 3507109 55 - 12438626 GTTGTTTGCACACCAGCAGGTGATCCCTGTGCTCCAGTGCCTGTGGAATGTAAAG
  982. a score=2821.0
  983. s hg17.chr22 30665273 6 + 49554710 ATGGGG
  984. s panTro1.chr23 30832251 6 + 50034486 ATGGGG
  985. s mm5.chr5 31452558 6 + 149219885 ATGGGG
  986. s rn3.chr14 28756724 6 - 112220682 ATGGGG
  987. s galGal2.chr15 3672628 6 - 12438626 ATGGGG
  988. s fr1.chrUn 333993217 6 - 349519338 ATGGTC
  989. s danRer1.chr10 6576471 6 - 25436222 ATGGCT
  990. a score=177812.0
  991. s hg17.chr22 30665279 81 + 49554710 GACCGGGAGCAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAGGCGGAGCGCTACGACGACATGGCCTCCGCTATGAAGGCG
  992. s panTro1.chr23 30832257 81 + 50034486 GACCGGGAGCAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAAGCGGAGCGCTACGACGACATGGCCTCCGCCATGAAGGCG
  993. s mm5.chr5 31452564 81 + 149219885 GATCGAGAGCAGCTGCTGCAGCGGGCGCGACTGGCGGAGCAGGCGGAGCGCTACGACGATATGGCCTCCGCCATGAAGGCG
  994. s rn3.chr14 28756730 81 - 112220682 GACCGAGAGCAGCTGCTGCAGCGGGCGCGACTGGCGGAGCAGGCGGAGCGCTACGACGACATGGCCTCCGCCATGAAGGCG
  995. s canFam1.chr26 27923330 81 + 41009621 GACCGAGAGCAGCTGCTGCAGCGGGCGCGGCTGGCCGAGCAGGCGGAGCGCTACGACGACATGGCCTCCGCCATGAAGGCG
  996. s galGal2.chr15 3672634 81 - 12438626 GACCGAGAGCAGCTGCTGCAGCGAGCCCGCCTGGCCGAGCAGGCGGAGAGATACGACGACATGGCCTCGGCCATGAAGTCG
  997. s fr1.chrUn 333993223 81 - 349519338 GACCGCGAGCAGCTGGTGCAGAAAGCCAGGCTGGCTGAACAGGCTGAGAGATATGATGATATGGCCGCTGCAATGAAATCG
  998. s danRer1.chr10 6576477 81 - 25436222 GACCGGGAACAACTGATCCAAAGAGCCCGTCTGGCGGAGCAGGCGGAGCGCTATGATGATATGGCCTCCGCGATGAAGCTG
  999. a score=239048.0
  1000. s hg17.chr22 30939054 212 + 49554710 TC-AGGCATAGTAGCCGTGAATAAAGACCACCACAGCCAGGAGGAGGATGGCGTTGATGTTCACTATTGTCCTCCACGAGGGCCTCTCAGACGTGTCTGTGAGCTTCTTGCTCAAGGCTTCCTCCTCCTCCTTGGTTAGCTTGGGTC---CCTTCTG---------CAAACCGCAGAA-CAAGTCATAAGCTTTCTTGAGGCATCCACGTGATTTCTCAGGATAAT
  1001. s panTro1.chr23 31094394 212 + 50034486 TC-AGGCATAGTAGCCGTGAATAAAGACCGTCACAGCCAGGAGGAGGATGGCGTTGATGTTCACTATTGTCCTCCACAAGGGCCTCTCAGACGTGTCTGTGAGCTTCTTGCTCAAGGCTTCCTCCTCCTCCTTGGTTAGCTTGGGTC---CCTTCTG---------CAAACCGCAGAA-CAAGTCATAAGCTTTCTTGAGGCATCCACGTGATTTCTCAGGATAAT
  1002. s mm5.chr10 54573933 203 - 130633972 TC-AGGCAAAATAGCCATAGAAAAACGCTGCTACAGCCAAGAGGAGGATGACATTGACGTTCATGACCGTCCGCCAGAAGGGCTTCTCTGTTGTGTCTG------------TCAGAGCTTCCTCCTCTACTTTAGTCAACTTGAATTCAGCTCTTTG---------CAAACCACAGAA-TAGGTCACACGTCTTCTTGAGACATCCACGAGGTTTCTCAGTTTGGT
  1003. s rn3.chr20 12876263 215 + 55296979 TC-AGGCAAAATAGCCATAGAAAAAAGCCGCCACGGCCAAGAGGACAATGACATTGACGTTCACGACCGTCCGCCAGAAGGGCTTCTCGGATGTGTCTGTCAGCTTCTTCTTCAGGGCTTCTTCCTCCTCTTTAGTCAGCTTGGGTTCCGCTCTTTG---------CAAACCACAGCA-TAGGTCATAAGTCTTCTTGAGACATCCACGAGGTTTCTCCGTTTGGT
  1004. s canFam1.chr26 28103537 215 + 41009621 TC-AGGCAAAATAGCCATGGGCAAAGACAGCCACTGCTAGGAGTAGAATGGCATTGACATTCACTATAGTCCTCCATAAAGGCTTCTCAGATGTGTCTGTCAGCTTCTTTTTCTGGGCTTCTTCCTCTTCTTTGCTCAGTTTGGGACCTGTCTTCTG---------CAAACCACAAAA-TATGTCATAAGCCTTCCTGAGGCATCCACGGGGTTTCTCAGGATTAT
  1005. s galGal2.chr15 8705700 216 + 12438626 CCTATGCAAAAAAGGCATGGCAAAATACAGCCACAGTCAGTAGGATGATGCCGTTGATATTCACAACATTCCTCCAAAGTGGCACTTCTGATGTGTCAGTCAGTTTCTTCTTCAGCGCTTCCTCTTCCTCCTTGCTCAGTTTGGGTC---CTTTTTG---TTGGTCTAAGCCACAGAA-CCAGTTGTAAGCTTTCTTTAGGCATCC---TGGGTCTTCACTTTCCT
  1006. s fr1.chrUn 241992320 217 - 349519338 TT-ACGCGAAAAAGCCGTGGCAGAAGAAAGCGACAGCCAGGAGGATGAGGGCGTTGACGTTGACCACGTTCCTCCACAGCGGCTTCTCCGAGGTGTCCGTGAGCTTCCGCTTCATCTCGGCTTCTTCTTCCGGGGTCAGTTTGA------CCGTTTGGTTCTGTTCCAGCCCGCAGAAGCACATCAC-CGCCTTCTTGC-ACAGACCCGGTTGTTCTTGGGGTTCT
  1007. s danRer1.chrUn 30145435 215 + 367113659 TT-AACCGAAGAAACCGTGGAAAAAGACGCAGACGGTGAGGAGGATAACGGCGTTAGCGTTGACCACATTTCTCCATAGAGGTTTCTCAGTGGTGTCGGTGAGCTTCATCTTCAGCTCAGCCTCCTGTTCTTTAGTCAGTTTGGGAGCATTGCCTTG------ATCGAAGCCGCAGAA-CCAGTTGTAGGCCTTCTTACAACAGCC---TGGCTCCTCACGCATCT
  1008. a score=593066.0
  1009. s hg17.chr5 131424298 81 + 180857866 ATGAGCCGCCTGCCCGTCCTGCTCCTGCTCCAACTCCTGGTCCGCCCCGGACTCCAAGCTCCCA----TGACCCAGACAACGCCC
  1010. s panTro1.chr4 137757118 81 + 188378868 ATGAGCCGCCTGCCCGTCCTGCTCCTGCTCCAACTCCTGGTCCGCCCCGGACTCCAAGCTCCCA----TGACCCAGACAACGTCC
  1011. s mm5.chr11 67741889 85 - 121648857 ACCAGCATCCACACCATGCTGCTCCTGCTCCTGATGCTCTTCCACCTGGGACTCCAAGCTTCAATCAGTGGCCGGGATACCCACC
  1012. s rn3.chr10 71032732 73 - 110733352 ACCAGCATCCTCTGCATGCTGCTTCCGCTCCTGATGCTCTTCCACCAGGGACTCC-AGTTTTCA-----------GGCAGTGCCC
  1013. s canFam1.chr11 21697475 75 + 75769841 ATGAGCAGCTTCCCCATCCTGCACCTTCTCTTGCTCCTG------CTTGGATGCCAAGTCCCAC----AGGCACAGGGGAGGCCT
  1014. a score=7416.0
  1015. s hg17.chr5 131424379 81 + 180857866 TTGAAGACAAGCTGGGTTA---ACTGCTCTAACATGATCGATGAAATTATAACACACTTAAAGCAGCCACCTTTGCCTTTGCTG
  1016. s panTro1.chr4 137757199 81 + 188378868 TTGAAGACAAGCTGGGTTA---ACTGCTCTAACATGATCGATGAAATTATAACACACTTAAAGCAGCCACCTTTGCCTTTGCTG
  1017. s mm5.chr11 67741976 57 - 121648857 TTAACCAGAACGTTGAATT---GCAGCTCT---ATTGTCAAGGAGATTATAG------GGAAGCTCCCA---------------
  1018. s canFam1.chr11 21697550 84 + 75769841 TTTTCGACAGACCTGCCTAAGCAATACTTCACAATGATCAATGAAATTATGGAGATGTTAAACAAGTCACCCTCGCCTTCAGAA
  1019. a score=137534.0
  1020. s hg17.chr5 131556601 71 + 180857866 TCAGTCAACTTCTGTTGATCCACAAGGTCTCAAGAACTCCTGTCCTCGTTCATGGAACCACTTATTGGAGA
  1021. s panTro1.chr4 137889227 71 + 188378868 TCAGTCAACTTCTGTTGATCCACAAGGTCTCAAGAACTCCTGTCCTCGTTCATGGAACCACTTATTGGAGA
  1022. s mm5.chr11 67877858 71 - 121648857 TCAATCAACTTCCGTTGTTCCACAAGGTCTTAAGAACTCCTGTCCTCGCTCATGGAACCACTTGTTGGAGA
  1023. s rn3.chr10 71169107 71 - 110733352 TCAATCGACTTCCGTTGTCCCACAAGGCCTCAAGAACTCCTGTCCTCGCTCATGGAACCACTTATTGGAGA
  1024. s canFam1.chr11 21882340 71 + 75769841 TCAGTCAACTTCTGTTGATCCACATGGCCTCAAGAATTCCTGTCCTCGTTCATGGAACCACTTATTGGAGA
  1025. s galGal2.chr13 15754170 71 + 17279963 TCAGTCAACCTCTGTTCTCCCACAGGGTCTTAAGAATTCGTTTCCTCTTTCATGAAACCATTTGTTTGAAA
  1026. s fr1.chrUn 144469271 71 + 349519338 TCAATCCACTTCTGTCAAACCGCAGGGTCTCCTGAATTCTTGACCTCGCTCATGAATCCACTTGTTCGACA
  1027. s danRer1.chr17 23182922 71 - 35757233 TCATTCCACCTCAGATAATGCACAGGGCCGTCTGAATTCTTGACCTCGTTCATGTATCCATTTGTTCGATA
  1028. a score=153108.0
  1029. s hg17.chr5 131621326 93 + 180857866 ATGCCCCATTCCGTGACCCTGCGCGGGCCTTCGCCCTGGGGCTTCCGCCTGGTGGGCGGCCGGGACTTCAGCGCGCCCCTCACCATCTCACGG
  1030. s panTro1.chr4 137954377 93 + 188378868 ATGCCCCATTCCGGGACCCTGCGCGGGCCTTCGCCCTGGGGCTTCCGCCCGGAGGGCGGCCGGGACTTCAGCGCGCCCCTCACCATCTCACGG
  1031. s mm5.chr11 67940186 93 - 121648857 ATGACCCACTCGGTGACCCTGCGCGGCCCTTCACCCTGGGGCTTCCGCCTGGTGGGCGGCCGGGACTTCAGTGCTCCCCTCACCATCTCGCGG
  1032. s rn3.chr10 71238657 93 - 110733352 ATGACCCACTCGGTGACCCTGCGCGGCCCTTCACCCTGGGGCTTCCGCCTGGTGGGCGGCCGTGACTTCAGTGCCCCCCTCACCATCTCGCGG
  1033. s canFam1.chr11 21937834 93 + 75769841 ATGCCGCACTCCGTGACCCTACGCGGCCCGTCGCCCTGGGGCTTCCGCCTGGTAGGCGGCCGGGACTTCAGCGCACCCCTCACCATCTCGCGG
  1034. s fr1.chrUn 144492794 93 + 349519338 ATGTCGCAGACCGTTACACTAAAGGGACCCTCTCCTTGGGGGTTCCGGCTGGTGGGAGGACGCGATTTCAGCACCCCGTTAACCATCTCCAGG
  1035. s danRer1.chrUn 204956892 93 + 367113659 ATGTCTCACACTGTGACTCTCAGCGGTCCCTCGCCCTGGGGTTTTCGGCTGGTGGGTGGACGAGACTTCAGCACACCGCTCACCATTTCCAGA
  1036. a score=705535.0
  1037. s hg17.chr5 131847541 125 + 180857866 CTACGGTGCACAGGGAATGGCCTGGATGGAG---GGCAACCGGACTGGGGT---CAGCAGGCTGTCCAGCCA---GGTGGCATCCATGTTCTTCAGATCTGTGAAGACACGCTGTAGACTCAGCCCAATATCCC
  1038. s panTro1.chr4 138180513 125 + 188378868 CTACGGTGCACAGGGAATGGCCTGGATGGAG---GGCAACCGGACTGGGGT---CAGCAGGCTGTCCAGCCA---GGTGGCATCCATGTTCTTCAGATCTGTGAAGACACGCTGTAGACTCAGCCCAATATCCC
  1039. s mm5.chr11 68232672 134 - 121648857 CTATGGTGCACAAGGAATGGCCTGAATAGAGGGCGGCAGCCTCACAGAGTTGCCCAGCAGGCTGTCCATCCACATGATGGAGTCCATATTCTTCATCTCCGTGAAGACATGTTGTATGCCTATCCCAATGTCCC
  1040. s rn3.chr10 71497371 131 - 110733352 TTATGGTGCACAAGGAATAGCCTGAATGGAG---GGCGGCCTGGTAGAGTTGCCCAGCAGGGTGTCCATCCACATGACGGGGTCCATATTCTTCATCTCTGTGAAGACACGCTGTATGCCTATCTCGATGTCCC
  1041. s canFam1.chr11 22141585 113 + 75769841 CTATGGTGCACAAGGAATGGCCTGGATGGAG---GGCAGTCTGACTGGAGT---CAACAGGCTGTCCAGCCA---GCTGGTGTCCATGTTCTTCAGATCTGAAGAGA------------TCAGCCCAACATACC
  1042. a score=0.0
  1043. s hg17.chr6 108299600 2 + 170975699 TT
  1044. a score=2325.0
  1045. s hg17.chr6 108299600 2 + 170975699 TT
  1046. s panTro1.chr5 110600637 2 + 175429504 TT
  1047. s mm5.chr10 87897895 2 - 130633972 TT
  1048. s rn3.chr20 8534936 2 - 55296979 TT
  1049. s canFam1.chr12 67925618 2 + 75455811 TT
  1050. s galGal2.chr3 42632727 2 - 108638738 TT
  1051. s fr1.chrUn 159061419 2 + 349519338 TC
  1052. a score=237362.0
  1053. s hg17.chr6 108299602 142 + 170975699 AGTCATCATCTTCTTCTTCCTCCTCTTCTTCCTCAAAGCTATCTTCAAAGCCCTCACTGTCCTCCTGGTCTTCATCCCCCTCTATTGC------TGTATCCCACTGTGGGTGATTTTCTGGCACAGGCTTAGCCTCATGAACTTCCAA
  1054. s panTro1.chr5 110600639 142 + 175429504 AGTCATCATCATCTTCTTCCTCCTCTTCTTCCTCAAAGCTATCTTCAAAGCCCTCACTGTCCTCCTGGTCTTCATCCCCCTCTATTGC------TGTATCCCACTGTGGGTGATTTTCTGGCACAGGCTTAGCCTCATGAACTTCCAA
  1055. s mm5.chr10 87897897 142 - 130633972 AGTCTCCACCTTCCTCTTCCTCCTCCTCTTCCTCAAAGCTGTCTTCAAATCCTTCACTGTCTTCCTGGTCTTCGTCACCTTCTATCGC------TGTGTCCCACTGTGGGTGGTTTTCTGGCACAGGCTTGGCCTCATGAACTTCCAA
  1056. s rn3.chr20 8534938 142 - 55296979 AGTCACCACCCTCCTCTTCCTCCTCCTCTTCCTCAAAGCTGTCTTCAAATCCTTCACTGTCTTCCTGGTCTTCGTCACCTTCTATTGC------TGTGTCCCACTGTGGGTGGTTTTCTGGCACGGGCTTGGCCTCATGAACTTCCAA
  1057. s canFam1.chr12 67925620 142 + 75455811 AGTCATCATCTTCCTCCTCTTCTTCCTCCTCCTCAAAGCTATCTTCAAAGCCTTCGCTGTCCTCCTGGTCTTCATCCCCCTCTATTGC------TGTATCCCACTGTGGGTGATTTTCTGGTACAGGCTTAGCCTCATGAACTTCCAA
  1058. s galGal2.chr3 42632729 142 - 108638738 AATCATCATCTTCCTCCTCTTCCTCTTCTTCCTCAAAACTGTCTTCAAAGCCCTCGCTGTCTTCCTGGTCCTCATCACCTTCTATTGC------TGTATCCCACTGAGGATGATTTTCTGGCACTGGTTTTGCTTCATGAACTTCCAG
  1059. s fr1.chrUn 159061421 136 + 349519338 AGTCATTGTCCTCGTCGTCGTCTTC------------ACTCTCCTCGATGCCGTCGCTGTCCTCCTGCTCCTCGTCCTCCTCCTCCGTGTCGGGGATGTCCCACTGAGGGTGATTGTCCAGCATAGCCTTGGCTTCGTGGACCTCCAG
  1060. s danRer1.chr8 26343964 145 - 36410523 AATGATTTTAGTCGTTGTCTTCTTCGTCTTCCTCAGA---CTCCTCAATGCCGTCACTGTCCTCCTGGTCATCCTCCTCTTCCTCAGTTTCTGGGATGTCCCACTGCGGGTGGTTATCCATCATGGCCTTCGCCTCATGAACCTCCAG
  1061. a score=78207.0
  1062. s hg17.chr6 108594662 25 + 170975699 ATGAGCAAGCCAGCCGGATCAACAA
  1063. s panTro1.chr5 110895281 25 + 175429504 ATGAGCAAGCCAGCCGGATCAACAA
  1064. s mm5.chr10 88143690 25 - 130633972 ATGAGCAAGCCCGCCGGATCAACAA
  1065. s rn3.chr20 8761429 25 - 55296979 ATGAGCAAGCCCGCCGGATCAACAA
  1066. s canFam1.chr12 68179741 25 + 75455811 ATGAGCAAGCCGGCCGGATCAACAA
  1067. s fr1.chrUn 210130082 25 + 349519338 ATGAGCAAAGCCGCCGGCTCAACAA
  1068. s danRer1.chr20 17232749 25 + 31913010 ATGAGCAAGCCTGCTGGTTCAACAA
  1069. a score=89508.0
  1070. s hg17.chr6 108640045 50 + 170975699 TCAGGCATGTCTTATTTTAGATGGAGTATAGCTTTTATCTATTATTTCAT
  1071. s panTro1.chr5 110940096 50 + 175429504 TCAGGCATGTCTTATTTTAGATGGAGTATAGCTTTTATCTATTATTTCAT
  1072. s mm5.chr10 88191839 50 - 130633972 TCAGGCATGTCTTATTTTAGATGGAGTATAGCTTTTATCTATAATTTCAT
  1073. s rn3.chr20 52647276 50 - 55296979 TCAGGCATGTCTTAGTTTAGATGGAGTATAGCTTTTATCTATGATTTCAT
  1074. s canFam1.chr12 68222804 50 + 75455811 TCAGGCATGTCTTATTTTAGATGGTGTATAGCTTTTATCTATAATTTCGT
  1075. s galGal2.chr3 42753356 50 - 108638738 TCAAGTATGTCTTATTTTGGATGGTGTGTAGTTTTTGTCTATTACTTCAT
  1076. s fr1.chrUn 210136674 50 + 349519338 TCAGGCTTGTCTGATCTTAGAGGGGGTGTAGTTCTTGTCCAAGACCTTGT
  1077. s danRer1.chr20 17245947 50 + 31913010 TTAGGCTTGTCTAATTTTGGAAGGGGTGTAGTTTTTATCCACAGACTCAT
  1078. a score=92653.0
  1079. s hg17.chr6 108640095 56 + 170975699 CTTGTAAAAACATGTGAAGACAACG-TTCGTTCTGTGCCAGAGGATGACCAGCGACC
  1080. s panTro1.chr5 110940146 56 + 175429504 CTTGTAAAAACATGTGAAGACAACG-TTCGTTCTGTGCCAGAGGATGACCAGCGACC
  1081. s mm5.chr10 88191889 56 - 130633972 CCTGTAAAAACATGTGAAGACAACG-TTCATTCTGGGCCAGAGGATGACCAGCGACC
  1082. s canFam1.chr12 68222854 57 + 75455811 CCTGTAAAAACATGTGAAGACAACGTTTCATTCTGTGCCAGAGGATGACCAGCAACC
  1083. s galGal2.chr3 42753406 56 - 108638738 CTTGTAAGAACATATGAAGACAGCG-CTCATTCTGTGCCAGTGGGTGGCCTGCAACC
  1084. s fr1.chrUn 210136724 56 + 349519338 CCTGTAGAAACATGTGCAGGCATCG-CTCGTTCTGGGCGAGAGGATGACCGGCCACT
  1085. s danRer1.chr20 17245997 56 + 31913010 CCTGTAGGAACATGTGCAGGCAGCG-CTCATTTTGGGCCAATGGATGACCAGCAACT
  1086. a score=53058.0
  1087. s hg17.chr6 108722976 139 + 170975699 ATGGCGGCCTCCTGGTCGCTCTTGGTTACCCTGCGCCCCTTAGCACAGAGCCCGCTGAGAGGGAGATGTGTTGGGTGCGGGGCCTGGGCCGCCGCTCTCGCTCCTCTGGCCACCGCCCCTGGGAAGCCCTTTTGGAAAG
  1088. s panTro1.chr5 111023287 139 + 175429504 ATGGCGGCCTCCTGGTCGCTCTTGGTTACCCTGCGCCCCTTAGCACAGAGCCCGCTGAGAGGGAGATGTGTTGGGTGCGGGGCCTGGGCCGCCGCTCTCGCTCCTCTGGCCACCGCCCCTGGGAAGCCCTTTTGGAAAG
  1089. s mm5.chr10 88248538 139 - 130633972 ATGGCGGCCTCCTGGTCGCCCTTGGTTACTCTGCGCTCCGCCGCGCGCAGCCGGCTGACTGGGAGAGGTGTTGGGTGCGGGGCGCGGGTCGTCGCAATCCCTCCTCCGGCCCCTGGCCCTGGGAAACCCCTGTGGAAAG
  1090. s galGal2.chr3 42777490 100 - 108638738 ATGGCGGCGCCCGTGTCGCCCTTGGTTACT------------GCGTGGTGCCTGCTGCGGGCA--------TCGGCGCGGCGTGTTGTCCGTC--------------TGCTGCCGGCACGGG-----CCCTGCCGAGAG
  1091. a score=607969.0
  1092. s hg17.chr7 113660517 168 + 158628139 ATGATGCAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTA---AGCAGCCAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCTGAAGTAAGCACAGTAGAACTGCTGCATCTGCAACAACAGCAG
  1093. s panTro1.chr6 115716623 168 + 161576975 ATGATGCAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTA---AGCAGCCAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCTGAAGTAAGCACAGTAGAACTGCTGCATCTGCAACAACAGCAG
  1094. s mm5.chr6 14955268 168 + 149721531 ATGATGCAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTTTA---AGCAGCCAATTAGATGCTGGCAGCAGGGATGGGAGATCAAG---TGGTGACACCAGCTCTGAAGTAAGCACAGTGGAGCTGCTGCATCTGCAACAACAGCAG
  1095. s rn3.chr4 40844510 168 + 187371129 ATGATGCAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTA---AGCAGCCAATTAGATGCTGGCAGCAGGGATGGGAGATCAAG---TGGTGACACTAGCTCAGAAGTAAGCACAGTGGAGCTGCTGCATCTGCAACAACAGCAG
  1096. s canFam1.chr14 56181068 168 + 63549963 ATGATGCAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTA---AGCAGCCAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACCAGCTCGGAAGTAAGCACAGTAGAACTGCTGCATCTGCAACAACAGCAG
  1097. s galGal2.chr1 165171657 168 - 188239860 ATGATGCAGGAATCTGCGACAGAGACAATAAGCAACAGTTCAATGAATCAAAATGGAATGAGCACTCTA---AGCAGCCAATTAGATGCTGGCAGCAGAGATGGAAGATCAAG---TGGTGACACGAGCACTGAAGTAAGCACAGTGGAACTCCTGCATCTGCAACAACAGCAG
  1098. s fr1.chrUn 206218864 174 + 349519338 ATGATGCAGGAGTCGGCCACAGAGACAATAAGCAACAGTTCAATGAGTCAAAATGGAATGAGCACCCTAAGCAGCAGCCAATTAGAGGCTGGCAGTAGAGATGGGAGATCAAGCGCTGGTGACACGAGCAGCGAAGTAAGCACAGTCGAGCTGCTGCATCTGCAACAACAGCAG
  1099. s danRer1.chrUn 132907084 167 + 367113659 ATGATGCAGGAGTCGGCCAATGAGACAATAAGCAACAGTTCAATGAGTCAAAATGGAATGAGCAGCCTA---AGCAGCCAATTAGATGCTGGCAGTAGAGATGGAAGATCAAG---TGGGGAGACGAGCAGTGAAGTAAGCGCAGTCGAGCTGCTGCATCTGC-ACAACAGCAG
  1100. a score=398171.0
  1101. s hg17.chr7 116512159 230 + 158628139 TCATGTAGCGGTTGTCCAGTCAGCGTTCTTGGGGGCCTTGCATGTGTGCACATCCAGAGCTTCCAGGCAGTCCTGACAGCGCACGGCGCAGCACCAGTGGAACTTACACCCACACTTGGTCATCCGGGTGACATGGGAGGTGTCGTAGCCTCTCCCACAGCACATGACTTCACAGCTGTCCATGCCCCGGGAAGTCAGGTTGCACACACGGCCTGCTGTACCCAGGGAGC
  1102. s panTro1.chr6 118798885 230 + 161576975 TCATGTAGGGGTTGTCCAGTCAGCGTTCTTGGGGGCCTTGCATGTGTGCACATCCAGAGCTTCCAGGCAGTCCTGACAGCGCACGGCGCAGCACCAGTGGAACTTACACCCACACTTGGTCATCCGGGTGACATGGGAGGTGTCGTAGCCTCTCCCACAGCACATGACTTCACAGCTGTCCATGCCCCGGGAAGTCAGGTTGCACACACGGCCTGCTGTACCCAGGGAGC
  1103. s mm5.chr6 17732295 230 + 149721531 TCATGTAGGCGTCGCCCAGTCGGCACTCTTGGGGGCCTTGCATGTGTGCACGTCCAGGGCCTCCAGGCAGTCCTGACAGCGCACGGCACAGCACCAGTGGAATTTACACTCACACTTGGTCATCCGGGTGACGTGGGATGTGTCATAGCCTCTCCCACAACACATAACTTCGCAGCTGTCCATGCCTCGGGAAGTCAAGTTGCACACACGGCCCGCTGTACCCAGGGAGC
  1104. s rn3.chr4 43819674 230 + 187371129 TCATGTAGGAGTTGTCCAGTCGGCACTCTTGGGGGCCTTGCATGTGTGCACGTCCAGGGCTTCCAGGCAGTCCTGACAGCGCACGGCACAGCACCAGTGGAATTTACACTCACACTTGGTCATCCGGGTGACATGGGATGTGTCATAGCCTCTCCCACAACACATAACTTCGCAGCTGTCCATGCCTCGGGAAGTCAAGTTGCACACACGGCCTGCTGTACCCAGGGAGC
  1105. s canFam1.chr14 58698446 230 + 63549963 TCATGTGGGAGCCGCCCAGTCGGCGCTCGTGGGGGCCTTGCACGTGTGCACGTCTAGGGCCTCCAGGCAGTCCTGACAGCGCACGGCGCAGCACCAGTGGAACTTACACTCGCACTTGGTCATCCGCGTGACGCGGGACGTGTCGTAGCCTCTCCCGCAGCACATGACCTCGCAGCTGTCCATGCCGCGGGAAGTCAGGTTGCACACGCGGCCCGCCGTCCCCGGGGAGC
  1106. s galGal2.chr1 166556534 230 - 188239860 TCATGTCCGGGAGGCCCAGCCCGCAGCCTTGGGCGCCTTGCACGTGTGGATGTCCACCTCCTCCAGGCAGTCCTGGCAGCGCACCGCGCAGCACCAGTGGAACTTGCACTCGCATTTGGTCATCCTGCTGACGCGCAACGTGTCGTAGCCACGGCCGCAGCACATCACCTCACAGCTGTCCATGCCGCGGGACGTCTGGTTGCACACCCGGCCGGCCGTCCCCGGAGAGC
  1107. s fr1.chrUn 117668262 224 - 349519338 --CCGCGGGGGGGGGCCAGGTCACGTC----AGGCCCTTGCAGGTGTGCACGTCCACCTGCTGGTGGCAGTCTCGGCAGAGCACGGCGCAGCACCAGTGGAACTTGCACTCGCACTTGGTGGTGCGGCCGACCCGGGACGTGTCGTAGCCCCGGCCGCAGCACATCACCTCGCAGCCGTCGGTGCCGGGGGACGTCCTGTTGCAGAGGCGCCCGCCGGTCCCCAGCGACC
  1108. s danRer1.chrUn 193800262 230 - 367113659 TCAAGTCAAATCGAGCCAGTCGGGTTTCTTGTGTAGTTTACAAGTGTGGACGTCCACCGTTTCCTCGCAGTCTCTGCACTCCACAGCGCAGCACCATTTAAACTTGCACTCGCATTTGGTCATGCGGTTTACACGGGTGGTGTCGTACCCGCGGCCGCAGCACATGATCTCACAGCCGTCCATGCCTCTGGAGGACTTGTTGCACACCCGTCCTGACGTACCCAGAGAAC
  1109. a score=266204.0
  1110. s hg17.chr7 116714099 53 + 158628139 ATGCAGAGGTCGCCTCTGGAAAAGGCCAGCGTTGTCTCCAAACTTTTTTTCAG
  1111. s panTro1.chr6 119004369 53 + 161576975 ATGCAGAGGTCGCCTCTGGAAAAGGCCAGCGTTGTCTCCAAACTTTTTTTCAG
  1112. s mm5.chr6 17978854 53 + 149721531 ATGCAGAAGTCGCCTTTGGAGAAAGCCAGCTTTATCTCCAAACTCTTCTTCAG
  1113. s rn3.chr4 44072448 53 + 187371129 ATGCAGAAGTCGCCTCTGGAGAAAGCCAGCTTTATCTCCAAACTCTTCTTCAG
  1114. s canFam1.chr14 58860070 53 + 63549963 ATGCAGAGGTCGCCCCTGGAAAAGGCCAGCGTCCTCTCCAAACTTTTCTTCAG
  1115. a score=435383.0
  1116. s hg17.chr7 116945541 246 + 158628139 CTATTTGTTAGGTTTTTCTAGGTGTTCATTTTT---GTGTAAGTTCCAATTCAC---TTCTTTTGAGTTGTTGTTGATTTCTATTTGCCTTGTATTA---CTGCTGCTGCTGCTTCTTTTGGTGTTCTGGGAACACTGGGTGACTTTACTTCTAGGAACAGGAAGAAAAGATTTAACTCTTGAAACACCCAACTCAGTCTTTGATTTACTGTTGCTGCATTCAGTAGTTTGATGGCTGCTGAGAGGACTGACC---TC
  1117. s panTro1.chr6 119229725 246 + 161576975 CTATTTGTTAGGTTTTTCTAGGTGTTCATTTTT---GTGTAAGTTCCAATTCTC---TTCTTTTGAGTTGTTGTTGATTTCTATTTGCCTTGTATTA---CTGCTGCTGCTGCTTCTTTTGGTGTTCTGGGAACACTGGGTGACTTTACTTCTAGGAACAGGAAGAAAAGATTTAACTCTTGAAACACCCAACTCAGTCTTTGATTTACTGTTGCTGCATTCAGTAGTTTGATGGCTGCTGAGAGGACTGACC---TC
  1118. s mm5.chr6 18175809 246 + 149721531 CTATTTGTTTGGTTTTTCTACTTGTTCGTGTTT---GTCTAAGGTCCAATTCTC---TTCTTTGGAGTTGTTGTTGATTTCTAGTTGCCTTGTATTG---CTGCTGCTGCTGTTTCTTTTGGTGTTCTGGGAACACTGAGCGACTTTGCTTCTAGGAACAGGAAGAAAAGATTTAACGCTTGAGACACCCATCTCAGTCTTTGATTTACTGTTGCTGCATTCGGCAGTTTGACGGCTGCTGGGAGGACTGGCT---TC
  1119. s rn3.chr4 44334350 249 + 187371129 CTATTTGTTACGTTTTTCTACGTGTTCGTGTTT---GTCTACGTTCCAATTCTC---TTCTTTGGAGTTGTTATTGATTTCTAGTTGCCTTGTATTACTGCTGCTGCTGCTGCTTCTTTTGGTGTTCTGGGAACACTGGGCGACTTTACTTCTAGGAACAGGAAGAAAAGATTTAACTCTTGAGACACCCAACTCAGTCTTGGATTTACTGTTGCTGCATTCGGTAGTTTGATGGCTGCTGAGAGGACTGGCT---TC
  1120. s canFam1.chr14 59084680 249 + 63549963 CTGTTGGTTTGGTTTTGCGACTTGTTCGTTTTTTTGGTGGAAGTTTCAAATCTC---TTCTTTTGAGTTGTTGTTGATTTCGGTTTGCCTTGTATTA---CTGCTGCTGCTGCTTCTTTTGGTGTTCGGGGAACACTGGGTGGCTTTACTTCTAGGAACAGGAAGAAAAGATTTAACTCTCGAAACACCCAACTCCGTCTTGGATTGCCTGTTGCTGCATTCGGCCGCTTGGTGGCTGCTGAGAGGACTGGGC---TC
  1121. s galGal2.chr1 166718518 245 - 188239860 TTATT-GTAAAATTTTTCTGTTTGTTCTTTTTTTT-GTGCAAATTCCAAATCTCTCTTTTTTTTGTGTCGTTATCTGCCTCTATTTGCCTTGTATTA---CTGCTGCTGCT--TTTTTTTAGTACTCTGAGAAGGCTGGGTGACTTTACTTCTCGGTACAGGAAGAAAAGATTTAACTCTTGAACCACCCAGCTCTGTCTTTGAT------TTGCTGCTTTCTACAGTTCGACTGCTGCTGAGAGGACGGATTCCATC
  1122. a score=404599.0
  1123. s hg17.chr8 118881131 186 + 146274826 TC---------AAAGTCGCTCAATGTCTCGGTATTTCTTCCTCAAAATAGAGACCTGGTCTTTAAAGAGGACGGGGTCGAGCCTCATCTGAGAGTGGATCAGCGGCATGTAGCCAAACCAGCTGGCAAACGTATTCATGCAGCTCTGTCGCTGGGCAAAGTGGTCAGGGTCAGCCCAACGGGAAGCCCGAGAAGT
  1124. s panTro1.chr7 121606752 186 + 149542033 TC---------AAAGTCGCTCAATGTCTCGGTATTTCTTCCTCAAAATAGAGACCTGGTCTTTAAAGAGGACGGGGTCGAGCCTCATCTGAGAGTGGATCAGCGGCATGTAGCCAAACCAGCTGGCAAACGTATTCATGCAGCTCTGTCGCTGGGCAAAGTGGTCAGGGTCAGCCCAACGGGAAGCCCGAGAAGT
  1125. s mm5.chr15 53109074 186 + 104138553 TC---------AAAGTCGTTCAATGTCTCTGTATTTCTTCCTCAGAATTGAGACTTGGTCTTTAAAGAGGACCGGGTCCAGCCTCATCTGAGAATGGATCAGCGGCATGTAGCCAAACCAGCTGGCAAATGTATTCATGCAGCTCTGTCGCTGGGCAAAGTGGTCAGGGTCGGCCCAGCGGGATGCTCGGGAAGT
  1126. s rn3.chr7 89414686 186 + 143082968 TC---------AAAGTCGTTCAATGTCTCTGTATTTCTTCCTCAGGATTGAGACTTGGTCTTTAAAGAGGACCGGGTCGAGCCTCATCTGAGAGTGGATCAGCGGCATGTAGCCAAACCAGCTGGCAAACGTATTCATGCAGCTCTGTCGCTGGGCAAAGTGGTCAGGGTCAGCCCAGCGAGATGCTCGGGAAGT
  1127. s canFam1.chr13 20213465 186 + 66159989 TC---------AAAGTCGCTCAATGTCTCGGTATTTCTTCCTCAGAATAGAGACCTGGTCTTTAAAGAGGACAGGGTCGAGCCTCATCTGCGAGTGGATCAGCGGCATGTAGCCAAACCAGCTGGCAAACGTATTCATGCAGCTCTGTCGCTGGGCAAAGTGGTCAGGGTCAGCCCAGCGGGAAGCCCGAGAAGT
  1128. s galGal2.chr2 14208956 186 - 147590765 TC---------AGAGTCGTTCAATGTCTCGGTATTTCTTCCTCAGGATGGAGACCTGGTCTTTAAAGAGGACAGGGTCGAGCCTCATCTGAGAGTGGATCAGCGGCATATAGCCAAACCAGCTGGCAAAAGTGTTCATGCAGCTCTGCCGTTGGGCGAAGTGGTCGGGGTCGGCCCAGCGTGAGGCCCGGGATGT
  1129. s fr1.chrUn 293823575 195 - 349519338 TCTGGATGGTTATAGCCTCTCTATGTCCCTGTACTTCTTCCTCAGTATGGACACCTGGTCTTTGAAAAGGACCGGGTCCAGCCTCATCTGTGAGTGGACCAGGGGCATGCTGCCAAACCAGCTGGCAAACTTGTTCATGCAGGTCTGACGCTGGGCAAAGTGGTCCGGGTCGGCCCAGCGAGACGCTCGGGAGCT
  1130. s danRer1.chrNA 25951001 186 + 390413307 TC---------AGAGTCGCTCGATGTCTCTGTACTTCTTGCGCAGTATTGATACCTGGTCCCTGAACAGAACAGGATCCAGTCTCATTTGCGAATGGACCAGGGGCATTGTGCCAAACCAGCTGGCAAATTTGTTCATGCACGTCTGCCTCTGGGCAAAATGGTCAGGGTCGGCCCAACGTGATGCACGGGACGT
  1131. a score=116382.0
  1132. s hg17.chr9 128764156 33 + 138429268 ATGGCCTGCCTGAGCCCCTCGCAGCTCCAGAAG
  1133. s panTro1.chr11 113605485 33 + 123086034 ATGGCCTGCCTGAGCCCCTCGCAGCTCCAGAAG
  1134. s mm5.chr2 30226931 33 + 181686250 ATGGCCTGCCTGAGTCCCTCACAACTCAAGAAG
  1135. s rn3.chr3 9310853 33 + 170969371 ATGGCCTGCCTGAGTCCCTCACAACTCAAGAAG
  1136. s canFam1.chr9 6350671 33 - 53642819 ATGGCCTGCCTGAGCCCCTCGCAGCTCCAGAAG
  1137. a score=-3882.0
  1138. s hg17.chr9 128787519 1 + 138429268 C
  1139. s mm5.chr2 30244450 0 + 181686250 -
  1140. s rn3.chr3 9330108 0 + 170969371 -
  1141. s canFam1.chr9 6365310 0 - 53642819 -
  1142. s fr1.chrUn 290357729 0 - 349519338 -
  1143. a score=2555.0
  1144. s hg17.chr9 128787520 5 + 138429268 TAGGC
  1145. s mm5.chr2 30244450 5 + 181686250 TAGGC
  1146. s rn3.chr3 9330108 5 + 170969371 TAGGC
  1147. s canFam1.chr9 6365310 5 - 53642819 TATGC
  1148. s galGal2.chr17 5207254 5 - 10632206 TAAAC
  1149. s fr1.chrUn 290357729 5 - 349519338 CAAAG
  1150. a score=71382.0
  1151. s hg17.chr9 128787525 62 + 138429268 CATCAGCAATATCAGGAGGTAGAGAGGCAGAAGGAGATTGTCTATCTGTGTAGTGTATGCTT
  1152. s mm5.chr2 30244455 62 + 181686250 CATCAGCAATATCAGTAGGTAGAGAGGCAACAGGAGATTGTCTATCTGAGTAGTGTACGCTT
  1153. s rn3.chr3 9330113 62 + 170969371 CATCAGCAAAATCAGTAGGTAGAGGGGCAACAGGAGATTGTCTATCTGAGTTGTGTATGCTT
  1154. s canFam1.chr9 6365315 62 - 53642819 CATCAGCAATATCAGGAGGTAGAGAGGCAACAGGAGATTGTCTATCTGTGTCGTGTATGCTT
  1155. s galGal2.chr17 5207259 62 - 10632206 CATAAACATGATCTGGAGGTAGAGAGGTAACAGCAAATTATCAATTTGGGTTGTGTAAGCTT
  1156. s fr1.chrUn 290357734 62 - 349519338 CAACAGCAGGATAAAGAGGTAAAGTGGGAGGAGGAGGTTGTCTATTTGGAAGGTGTAAGCTT
  1157. s danRer1.chr21 12648417 62 - 13488766 CAGCAGGAGGATGTAGAGATACAGAGGAAGCAGAAGGTTGTCAATCTGCGACGTATAGGCCT
  1158. a score=2211540.0
  1159. s hg17.chr9 128787587 1515 + 138429268 CCAGGAGGGACA---CAGTGCTGATGGACCCCAAA--ATCCAAGCATAACTGTAGTTTAGGTCCACTCCACTGTCAAAGATTAAGATCAGAGCTACAGAAATGATCTGCGCAAATATAGATGTCATGGTCCCCTCAAAAGTCTTTTTGGTTCCAGGCCAGCGGATCTCCCCCATGGTGCTACCGAAGATGGAGGCCACAGTATCACCCACACCCACAGCCAGGACACCGGCATAGGGGACGAGGGCCCTGGCTCCTCCCAGGCTACCCTTCTGTGTGCAGGGTCTGGGGATCAGCCAGATGGGAAGAGACATGCCCAGGAGCAGGTAGATGTGTGTCAGAATGAGTGGTCCACTGTCTCGTTCATCCAGAAAAAGGGACAGGAAGCTCCGTAGAGTGTGACCCAAAGGCTTGATGCGGAAGTAGCGCACATACTCCAGGAAGATGAAGACCGCCAGGCATACAGTGGCGGCTACATAGAGCAGTGGCCGGTCAAAGATGATACCTGGGATGTAGGTGGCTACCACAATGAGGTGGAAATACTTTCGGGCGATGGTGGGGGCCTGGTGCTTCTTGGACTCGGAAGATGACCGCTTGGCATTCTGGTACAGCACCACCAGGCAGGCCAAGGTGGCCAGCAGAGACCAATAGGCTAGGAGGTAGATGCGGGTGTCTGTCTGGAAGAGAAACTGAAGAAGCCAGAGCAGGGGATTCCTGCGGATGAGCCGGTGCAGCCAGGGTAGGACCACACCAAGGCTCAGCACACAGGTCATGAGGTGGAAGAAGATGGAGGAGGCCCAGGTGCCTGAGTCCATGAAGACAAACAGAGTGCTGAAGAAAATGCCCATGAGTACCATCCCTACTACCACCACCAGCAGGAAGAAGTCCACTGGGTC---CCCCTGACTTTCCACCAGTGTCAGAGAGCGCTTGATGAGCTGGTTGAGGACAAAGCTAATGCCACCCAATACCAGCAGTGCCTCACCAGGGGTGAAGCAGCGGGGCAGCAGGTACAGCAGGATCATGTTGAGATAAACGAAGATCAGAAGGACTTCCAGGACTTCGATCACCTCCCCCACGCTCAACGAGTGCTTCATGATATAAATGATAACACCTCCAGCCAAGCCCAAGATGACACAAGTGTTGGTTGGCACTGGGCGAGTGATGCCGAGCGCCAACACTGATGAGAAGAGGGCCACTGCCATGCCAGTGGCTGCCACCACAATGCCAAAACGCTCAAAGAACGGGTTCCCAGCAGTCTGGCACCGCTCCTTCATGACTAGTCCAAGCAAAGGCATGACCATGGAGGCGGGCAATAGGCCACTGTTTGCGGACATTCGGAACTGGAAGACGGCGCTTCCCTGCTGTAGCAGCCGGTCCCACTTGTATTGGACGTAGAAGGCCTGCACTGCGAGGGCCACGGCGCACCACGAGTATCGGTCCCATACGGTTGCGTGGATGCTCAGCACCACTGCAAACACTACTGCCGCCTCTGCCAGCACCGATCCACTCAGCGGAGCCCCAG
  1160. s panTro1.chr11_random 46298820 1517 - 53199993 CCAGGAGGGGCATGCC--TGCAGATGGACTCTAGAGGATCCAAGCATAACTGTAGTTTAGGTCCACTCCACTGTCAAAGATTAAGATCAGAGCTACAGAAATGATCTGCGCAAATATAGATGTCATGGTCCCCTCAAAAGTCTTTTTGGTTCCAGGCCAGCGGATCTCCCCCATGGTGCTACCGAAGATGGAGGCCACAGTATCACCCACACCCACAGCCAGGACACCGGCATAGGGGACGAGGGCCCTGGCTCCTCCCAGGCTACCCTTCTGTGTGCAGGGTCTGGGGATCAGCCAGATGGGAAGAGACATGCCCAGGAGCAGGTAGATGTGTGTCAGAATGAGTGGTCCACTGTCTCGTTCATCCAGAAAAAGGGACAGGAAGCTCCGTAGAGTGTGACCCAAGGGCTTGATGCGGAAGTAGCGCACATACTCCAGGAAGATGAAGACCGCCAGGCATACAGTGGCGGCTACATAGAGCAGTGGCCGGTCAAAGATGATACCTGGGATGTAGGTGGCTACCACAATGAGGTGGAAATACTTTCGGGCGATGGTGGGGGCCTGGTGCTTCTTGGACTCGGAAGATGACCGCTTGGCATTCTGGTACAGCACCACCAGGCAGGCCAAGGTGGCCAGCAGAGACCAATAGGCTAGGAGGTAGATGCGGGTGTCTGTCTGGAAGAGAAACTGAAGAAGCCAGAGCAGGGGATTCCTGCGGATGAGCCGGTGCAGCCAGGGTAGGACCACACCAAGGCTCAGCACACAGGTCATGAGGTGGAAGAAGATGGAGGAGGCCCAGGTGCCTGAGTCCATGAAGACGAACAGAGTGCTGAAGAAGATGCCCATGAGTACCATCCCTACTACCACCACCAGCAGGAAGAAGTCCACTGGGTC---CCCCTGACTTTCCACCAGTGTCAGAGAGCGCTTGATGAGCTGGTTGAGGACAAAGCTAATGCCACCCAATACCAGCAGTGCCTCGCCAGGGGTGAAGCAACGGGGCAGCAGGTACAGCAGGATCATGTTGAGATAAACGAAGATCAGAATGCCTTCCAGGACTTCGATCACCTCCCCCACGCTC-CCTAGAGCTTCATGATATAAATGATAACACCTCCAGCCAAGCCCAAGATGACACAAGTGTTGGTTGGCACTGGGCGAGTGATGCCGAGCGCCAACACTGATGAGAAGAGGGCCACTGCCATGCCAGTGGCTGCCACCACAATGCCAAAACGCTCAAAGAACGGGTTCCCAGCAGTCTGGCACCGCTCCTTCATGACTAGTCCAAGCAAAGGCATGACCATGGAGGCGGGCAATAGGCCACTGTTTGCGGACATTCGGAACTGGAAGACGGCGCTTCCCTGCTGTAGCAGCCGGTCCCACTTGTATTGGACGTAGAAGGCCTGCACTGCGAGGGCCACGGCGCACCACGAGTATCGGTCCCATACGGTTGCGTGGATGCTCAGCACCACTGCAAACACTACTGCCGCCTCTGCCAGCACCGATCCACTCAGCGGAGCCCCAG
  1161. s mm5.chr2 30244517 1509 + 181686250 CCAGAAGGGATA---CAGTGCTGATGGACCCCAAA--ATCCAGGCATAACTGTAGTTCAGGTCTACTCCACTGTCAAAGATTAAGATTAGAGCTACAGAGATGATTTGTGCAAATATAGATGTCATAGTCCCCTCGAAGGTTTTCTTAGTTCCAGGCCAGCGGATCTCTCCCATGGTGCTGCCAAATATGGAGGCCACAGTATCACCCACACCCACAGCCAAGACCCCAGCATAGGGGACCAGGGCTCTTGCTCCTTCCAGGCTGTCCTTCTGTGTACAGGGTCTGGGGATCAGCCAAATAGGAAGAGACATGCCCAGAAGCAGGTAGATGTGTGTTAGGATAAGGGGTCCACTGTCTCGTTCATCCAGGAAGAGGGACAGAAGGCTTCGCAGAGTGTGACCCAAGGGCTTTATTCGGAAATAGCGCACATACTCCAGGAAGATGAAGACTGCCAGGCACACAGTGGCGGCCACATACAGCAGTGGCCGGTCAAAGATGATGCCCGGGATATAAGTGGCTACCACAATGAAGTGGAAATACTTTCTTGTAATGGTAGGCGCCCTGTGCTTCTTGGACTCAGAAGACGACCGCTTAGCATTCTGGTACAGCACCACCAGGCAGGCCACAGAGGCCAGCAAAGACCAATAGGCAAGGAGGTAGATGCGAGTTTCAGTGTAGAAGAGGAACTGAAGAAGCCAAAGCAGGGGGTTCCTACGAATGAGCCAGTGCAGCCAGGGCAGAACCACACCAAGGCCCAGCACACAGGTCATGAGGTGGAAGAAGATGGAAGAGGCCCAGGTGCCTGAATCCATGAAGACAAAGAGGGTGCTGAAAAAGACACCCATGAGCACCATCCCTACCACCACCACCAACAGGAAGAAGTCCACTGGGTC---CCCCTGGCTTTCA------GTCAGAGAGCGCTTGATGAGTTGGTTAAGGACGAAGCTAATGCCACCCAATACCAGCAGTGCCTCCCCAGGAGTGAAGCATCGGGGCAGCAGGTACAGCAGGATCATGTTGAGATAAACAAATATTAGCAGGACTTCCAGGACCTCGATCACCTCGCCTACACTGAGCGAGTGCCTCATAATATAAATGATAACGCCTCCAGCCAAACCAGAGATGGCACAAGTATTGGTGGGCACCGGGCGAGTAATGCCCAGTGCCAACACGGAGGAGAAGAGGGCCACTGCCATGCCAGTAGCTGCAACCACAATGCCGAAGCGCTCGAAGTATGGGTTCCCTGCAGTCTGGCAGCGCTCCTTCATGACTAGCCCAAGCAAAGGCATGACCATGGAGGCCGGCAGTAAGCCGCTGTTCGCGGACATCCGGAACTGGAAAACGGCATTGCCCTGCTGGAGCAGCCGGTCCCACTTGTACTGGACGTAGAAGGCCTGCACCGCGAGGGCCACCGCGCACCAGGAGTATCGGTCCCACACTGCAGCGTGGATGCTCAACACCACGGCGAACACCACTGCAGCCTCCGCCAGCACCGACCCGCTCAGCGCAGCCCCAG
  1162. s rn3.chr3 9330175 1509 + 170969371 CCAGAAGCGACA---CAGTGCTGATGGACCCCAAA--ATCCAAGCATAGCTGTAGTTCAGGTCTACTCCACTGTCAAAGATTAGGATCAGAGCCACAGAGATGATTTGTGCAAATATAGATGTCATAGTTCCCTCGAATGTTTTCTTAGTTCCAGGCCAGCGGATCTCCCCCATGGTGCTGCCAAATATGGAGGCCACAGTATCGCCCACACCCACAGCCAGGACCCCAGCATAGGGGACCAGGGCTCTTGCTCCTCCGAGGCTGCCCTTCTGTGCACAGGGTCTGGGGATCAGCCAAATGGGAAGAGACATGCCCAGAAGCAGGTAGATGTGCGTCAGGATGAGGGGCCCGCTGTCCCGTTCATCCAGGAAGAGGGACAGAAGGCTGCGCAGAGTGTGACCCAGGGGCTTGATTCTGAAATAGCGCACATACTCCAGGAAGATGAAGACGGCCAGACACACGGTGGCGGCCACATACAGCAGTGGCCGGTCAAAGATGATACCGGGGATGTAAGTGGCCACCACAATGAAGTGGAAATACTTTCTGGTAATGGTAGGAGCCTTGTGCTTCTTGGACTCAGAAGATGACCGCTTGGCATTCTGGTACAGCACCACCAGGCAGGCCATGGTGGCCAGCAAGGACCAATAGGCTAGGAGGTAGATGCGAGTTTCTGTGTAGAAGAGGAACTGAAGAAGCCAGAGCAGGGGGTTCCTACGAATGAGCCAGTGCAGCCAGGGCAGAACCACACCAAGGCCCAGCACACAGGTCATGAGGTGGAAGAAGATAGAAGAGGCCCAGGTGCCCGAATCCATGAAGACAAAGAGGGTGCTGAAAAAGACACCCATGAGCACCATCCCCACCACCACCACCAACAGGAAGAAGTCCACTGGGTC---CCCCTGGCTTTCA------GTCAGAGAGCGCTTGATGAGCTGGTTGAGGACGAAGCTAATGCCACCCAATACCAGCAGTGCCTCCCCAGGAGTGAAGCAGCGGGGCAGCAGGTACAGCAGGATCATGTTGAGATAAACGAATATTAGCAGGACTTCCAGGACCTCGATCACCTCGCCCACACTGAGCGAGTGCTTCATAATATAAATGATAATACCTCCGGCCAAACCCGAGATGGCACAAGTATTGGTGGGCACCGGGCGAGTAATGCCCAGTGCCAACACCGAGGAGAAGAGGGCCACTGCCATGCCAGTGGCTGCAACCACAATGCCGAAGCGCTCGAAGTATGGGTTCCCTGCAGTCAGGCAGCGCTCCTTCATGACCAGCCCAAGCAAAGGCATGACCATGGAGGCCGGTAGTAAGCCACTGTTCGCGGACATTCGGAACTGGAAAACAGCATTCCCCTGCTGGAGCAGCCGGTCCCACTTGTACTGGACGTAGAAGGCCTGCACTGCTAAGGCCACGGCGCACCAGGAGTATCGGTCCCACACTGCAGCGTGGATGCTCAGCACCACTGCGAACACCACTGCAGCCTCCGCCAGCACTGACCCGCTCAGCGCAAACCCAG
  1163. s canFam1.chr9 6365377 1515 - 53642819 CTAGGAGGGACA---CGATGCTGATAGAGCCCAAA--ATCCAAACATAACTGTAGTTTAGGTCCACTCCACTATCAAAGATTAAGATCAGAGCTACAGAAATGATCTGGGCAAATATAGAGGTCATGGTCCCCTCAAAGGTCTTTTTGGTTCCAGGCCAGTGGATTTCCCCCATTGTGCTGCCAAAAATGGAGGCCACAGTGTCCCCCACACCCACAGACAGGACTCCTGCATAAGGGACTAGGGCTCTTGCTCCCCCCAAGTTGCCCTTCTGTGTGCAGGGCCTGGGAACCAGCCAAATTGGAAGAGACATGCCCAAGAGCAGGTAGATATGTGTCAGGATGAGTGGTCCACTGTCTCGTTCATCTAAGAAAAGGGACAGGAGGCTCCTCAGAGTGTGGCCCAGGGGCTTGATGCGGAAATAGCGCACATATTCTAGGAAGATAAAGACTGTTAGGCATATGGTGGCAGCTACATAGAGCAGTGTCCGGTCAAGGATGATACCGGGGATGTAGGTGGCCACCACAATGAAGTGGAAATACTTTCGGGCAATGGTGGGGGCCTGGTGCTTCTTAGACTCAGAAGATGACCGCTTGGCATTCTGGTAAAGCACCACCAGGCAGGCTAAGGTGGCCAGCAGAGACCAGTAGACCAGGAGGTAGATGCGGGTCTCTTTCTGGAAGAGGAATTGAAGAAGCCAGAGCAGGGGGTTCTTGCGGATAAGCCGGTGCAGCCAGGGAAGGACCACGCCAAGGCCCAGCACACAAGTCATAAGGTGGAAGAAGATGGAGGAAGCCCAGGTACCTGAGTCCATGAAGACAAAGAGTGTGCTGAAGAAGACGCCCATAAGCACCATCCCTACTACCACCACCAGCAGGAAGAAATCCACTGGGTC---GCCCTGGCTCTCCACCACAGTCAGAGAACGCTTGATGAGCTGGTTGAGCATGAAGCTGATGCCACCTAATACAAGCAGTGCCTCCCCAGGGGTAAAGCAGCGGGGCAGCAGGTACAGCAGGATCATGTTGAGGTAGACGAAGATCAGCAGGACCTCCAGGACCTCGATCACCTCGCCCACACTCAGTGAGTGCTTCATGATATAAATGATGACACCTCCAGCCAAGCCTGAGATGACACAAGTGTTGGTGGGCACTGGGCGAGTGATGCCCAGTGCCAGTACCGACGAGAAGAGGGCCACTGCCATCCCAGTGGCTGCCACCACAATTCCAAAGCGCTCAAAATATGGGTTCCCCATGGACTGGCAGCGCTCCTTCATGACCAGTCCGAACAAAGGCATGACCATTGATGCGGGCAGCAGGCCACTGTTTGCGGACATGCGGAACTGGAAGACAGCGCTTCCCTGCTGCAGCAGCCGGTCCCACTTGTACTGGACGTAGAAGGCCTGCACTGCGAGAGCCACGGCGCACCACGAGTATCGGTCCCACACGGCTGCGTGGATGCTCAGCACCACTGCGAACACTACTGCTGCCTCCGCCAGCACTGACCCACTCAGCGGAGCCCCGG
  1164. s galGal2.chr17 5207321 1512 - 10632206 CCAAAAGAGAAA---CTAAGCTCACAGACACCAGA--ATCCAGGCATAGCTGGAGTTCAGGTTCACGCTGCTGTCAAAGATCAGAATAAGAGCCACAGCAATGATCTGAGCAAAAATTGCTGTCATTGTCCCTTCAAAGGTCTTCTTTGTGCCCGGCCATTTGATTTCCCCCATGGTACTGCCAAAAACAGAGGCCATGGTGTCTCCTACCCCTACTGCAAGCACCCCAGCATAGGGCACCAGTGCTCCTGCCCCAGACAAGGCACCTTTAGGGGCACAGGATCTGGGGAACAACCACACTGGGAGGGACATGCCAAGAAGAAGATAAATGTGAGTCAAGATTAGAGGCCCACTGTCTCTTTCATCCAAGAAGAGAGACAGCAAATAGCGAAGAGTTTGGCCAAACGGTTTGATCCTGAAGTACCGAATGTACTCTAAGAATATGAACACTGCCAGACACAGGACTGCAGCAACATGGAGAAGCTGGCGGTCATAAATTAGTCCAGGAACATAAGTTGCTACAACAATGAAATGGAAATACTTCCTGGTTATGGTTGAGGCCTGGTGTTTTTTAGATTCG---GACGATCTCTTGGCATTCTGGTAGAAAACTATGCCACACGCTGAAGCAGCCAATAAAGTCCAATATATGAGAAGGTAAACCCTCGTCTGTGTCTGAAACAGAAACTGGAGCAGCCAAAACAAAGGGTTCCTCCGGATCAGTCGGTAAAGCCAAGGCATGATGACCCCTAAGCCTAGCACTGCTGTCATCATGTGGAAAAACATGGAGGAGATCCACGTACCCGAATCCATGAAAATGAAGAGAACAGTGAAAAAAAGCCCAAGGATAACAACTCCAATAACTGCCACCAGAAGGAAGAAGTCTATGGGTTC---ACCTCTGCCCTCGATTACATTCAGTGAGCGTTTAATGAGCTGATTGAGAACAAAACTTATACCTCCGAGAACTAGCAATGCTTCTCCAGGAGTAAAACACCGAGGCAGCAGGTAGAGCAAGATCATACTGAGGTAGACAAAAATTAGCAGCACTTCTAGGACCTCTATCACTTCTGAAACAGTCAAAGAGTGCTTCATGGTATAGATAATTATACTGCCAGCAACACCACTGAGTATGCAGGTGTTGGTGGGCACAGGTTTTGTGATGCCAACAGCAATTACAGACAAAAATAGAGCAACCAACATGCCAGTGGAAGCTACAACTATGCCAAAGCGTTCAAAGTACACGATACCAGCAGCCTTGCACCTCTCCTTCATTGCTATCCCCAGCAAGGGGATGACCATGCTGGCAGGCAGGAGCCCACTGTTCGCTGTGGTGCGGAACTGGAACACAGCCCCCCCCTGCTGCAGCAGGCGGTCCCATTTAAACTGGACATAGAAAGCCTGGATGGCAAGAGCTACAGCACACCAGGAGTAGCGGTCCCACACCACTGCATGCACGCACAGAACGATGCTGAAGACGATCAGGGATTCCACCAGCACTGGTTTGTTTAACATGGTTCCAG
  1165. s fr1.chrUn 290357796 1512 - 349519338 CTAGCATTGCCA---CCAGAGTGATAGAACCAACA--ATCCAGGAGTAGCTGGAGTTCAGATTGATGCCAGTATCAAAGATTAGAAAGATGGCCACAGCAATAATCTGTGCAAACACAGATGTTGCAGTCCCCTCAATGGTTTTCTTAGTACCGGGCCAACGAATCTCTCCCATGGTGCTGCCAAACACAGATGCCACAGTATCTCCTACCCCGACAGCCAGGACACCTGCATATGGTATCAGCCCACCGGCACCAGGAAGTATTCCTTTTGGGGCACATGGTCCAGGGAACAGCCATATGGGAAGAGACATGCCCAAAAGGAGGTAAATGTGGGTCAGGATAAGAGGCCCAGAGTCCCGCTCATCCAGGAACAATGTAAGAACCTGTCTGAGCACCTGACCCAGTGGCCTGATCCGAAAGTAGCGCACGTACTCCAGGAACAAAAAGACTGCCAAGCAGCCAACAGAGGCCACATGGAGCAGGTGCCGGTCGTATATGAGACCTGGAACATAGGTGGCCACCACAATTAGATGGAAGTACTTCCGGACTACAGTCGAGGCTTGGTGTTTCTTGGACCCA---GACTGACGTTGATAGTTCTGGTGTAACACAACACAGGTGGCCAGGACCACCAGAAACACCCAGTATGCCAGCAGAGAGAGCCTTCTGTCAGTGAATGTGACAAAGTCCAGTAGCCACATGATGGGATGCCTGCCGATGAACAGGGATAGCCATGGCAACAGAATTCCCAGACTGAGAACGGCTGTCATGATGTGGAAAAAAACAGATGACACCCAGGTCTCTGATTCCATGAAGCAAAACAGCAGAGCAAAGAACACGCCCAGCAACAACGAGCCTACTACCACGACCGGCAGGAAATAATTTATTGGATC---GCCTTTGACCTCTGTCAAGTTCAGTGAGCGCTTGATAAGCTGGTTGACAATGAAACTGATTCCACCGATGATGAGAAGGGCTTCTCCGGGTGTGAAGCAGCGAGGCAGCAGGAAAAGCACGATCAGGCTGAGATAGACGAAGATCAACAACACCTCTAAGACTTCGATGACCTCAGACACCGTTAACGTCTGTTTCGTCATGTACAGAATTGCACTGGCGGCCATGCCTGCAATCACACAAGTGTTGGTGGGTACAGGTCTTGTAATGCCTAAGGCGATCAGGGAGAGGAACAGTGCCAGCATCATGCCGGTGATGGTGATGACCATGGAGAAGCGCTCGAGGTAAACGTTCCCTGATTCAGAGCACCTTAGTCTCAGCACCAAGCCCAGCAAAGGCATCACCATGGAGGCTGGGACGATGCCACTGTTTGCTGCTGGACGGAACTGGAACACGGCACCCCCCGACTTGAGCAAACGATCCCATTTGTGCTGAACGTAGAAAGCCTGGATGAAGAGTGCAATGCTGCACCAGGAATGCTGGTTCCACAGCACCATGTGGACCCACCCCACAATGGCAAAAACTATAGCGGACTCTACAAAGACTGGATTAATCTCCATTGCCACTG
  1166. s danRer1.chr21 12648479 1515 - 13488766 CCAACATGGCCA---CCATAGAGATGGATCCCACC--ACCCACGAGTAGCTGGCGTTCAGGTTAATACTGCTGTCGGCGATGAGGAAAACCACCACAGCGATAATCTGAGCGAACACAGAGGACGCCGTGCCCTCAAATGTCTTCTTAGTCCCAGGCCAGCGGATTTCACCCACGTTGCTGCCGAAAACGGATGCCACTGTGTCCCCGACCCCTACAGCAAGGACTCCAGCATAGGGTACTAGCCCACTAGCGCCCCCTAGGCCTCCTTTTGGGGTGCACATCCCAGGTGTCAACCACAGTGGAAGAGAAACGCCAAGAAGAAGATAAATATGAGTGAGAATAAGTGGTCCTGAATCTCTCTCATCAAGGAATAAGGTGAGAAGACGTCGAAGCGGAGCCCCGAATGGTCGAATGCGAAAATAGCGGACATATTCGAGAAACAAAAATGCAGAGAGGCAAACAACCGCAGACAAATGCAGCAAAGGACGATCCAGAGCGAGTCCGGGAGCGAAGGTTAAAACGGTGAGCAGGTGGAAATACTTCCGCACTGTCGTTGATGCTTGATGCTTCTTGCTGCCTGCAGAT---CGATGACTATTTTGATGCATCACAACGGCAACTGCTAGAAGCGCCAAAGCGGCCCAAAACCCAATGAGCCAAAGTCGAGTGTTTGATTCAGTGATGAAATGCATCAACCAAGTGATTGGATGGTGCTGCGTGAGTAGAGATAGCCAAGGAACCAATAACCCCAATCCCAAAACCGCAGTCATGGTATGGAAGAAGAGCGACGCTGACCAGGTTTCAGATTCCATGAATATAAAAAGCACGGCGAAGAATATTCCCAACAGCACTAACCCTAAAACAGCTACCGGGAGGAAATACGGAAGCGGGTCTGAGTTTGCATTTCCAGACGAAGCCAGAGAGCGCTTAATTAGCTGGTTGATGATAAAACTAATCCCGCCAAGGATCAGAAGGGCTTCGCCGGGGGTGAAGCAACGTGGAAGGAGGTACAGCAGGATTAAACTTAGATACACAAAAATCAGAAGCACCTCCAAGACTTCGATGACCTCAGACACTGTTAGTGTTTGCTTCACGGTGTACAGAATAGCACTACTAGCAATTCCGGCGATAACACAAGTGTTTGTTGGCACCGGCCGCGTGATTCCCAATGCGATGAGCGAGAGGAATAGAGCCAACATCATTCCGATTACTGTGATGACCATTGCGAATCGCTCCATGTAGACGTTTCCCACAGCGAGGCAGCGGCCTCGTAGGGTGAGTCCCAGTAGTGGCAGCACCATACTGGCTGGCAGGACGCCGCTGTTGGCTGAAGGACGAAACTGGAAGACGGCGGCACCAGAGCGAATCAGACGATCCCATTTGTGCTGCACATAAAAAGCCTGGACGGCCAATGCCATGCAGCACCAGGACAGCTGATTCCACACGGCCATGTGTACGGAAACCACCATGGCGAACACCACCGCAGATTCAACCAGCACTGGATCCATCTGCATGACTGCAG
  1167. a score=491.0
  1168. s hg17.chr9 128789102 2 + 138429268 GC
  1169. s panTro1.chr11_random 46300337 2 - 53199993 GC
  1170. s mm5.chr2 30246026 2 + 181686250 AC
  1171. s rn3.chr3 9331684 2 + 170969371 AC
  1172. s canFam1.chr9 6366892 2 - 53642819 GG
  1173. s galGal2.chr17 5208833 2 - 10632206 TC
  1174. s fr1.chrUn 290359308 2 - 349519338 GC
  1175. a score=-383.0
  1176. s hg17.chr9 128789104 1 + 138429268 C
  1177. s panTro1.chr11_random 46300339 1 - 53199993 C
  1178. s mm5.chr2 30246028 1 + 181686250 T
  1179. s rn3.chr3 9331686 1 + 170969371 T
  1180. s canFam1.chr9 6366894 1 - 53642819 A
  1181. s galGal2.chr17 5208835 1 - 10632206 C
  1182. a score=46199.0
  1183. s hg17.chr9 128789105 31 + 138429268 CCGGGGCCGGAGATGGGCACTCTCGGGTCAT
  1184. s panTro1.chr11_random 46300340 31 - 53199993 CCGGGGCCGGAGATGGGCACTCTCGGGTCAT
  1185. s mm5.chr2 30246029 25 + 181686250 CCTGG------GGAGGGCACTGTCGGGTCAT
  1186. s rn3.chr3 9331687 31 + 170969371 CCGGGGCTTGGGGAGGGCACTGTCGGGTCAT
  1187. s canFam1.chr9 6366895 25 - 53642819 CCGGG------GGAGCGTGCTCTCGGGTCAT
  1188. a score=145262.0
  1189. s hg17.chr9 128882427 96 + 138429268 ATGGCGTTCCGGAGGGCCGAGGGCACGTCTATGATCCAGGCCCTGGCCATGACGGTGGCCGAGATCCCCGTGTTCCTGTACACGACGTTTGGGCAG
  1190. s panTro1.chr11_random 46393737 96 - 53199993 ATGGCGTTCCGGAGGGCTGAGGGCACGTCTATGATCCAGGCCCTGGCCATGACGGTGGCCGAGATCCCCGTGTTCCTGTACACGACGTTTGGGCAG
  1191. s mm5.chr2 30327714 96 + 181686250 ATGGCATTCCGGAGGACTGAGGGTATGTCCATGATCCAGGCTCTGGCCATGACTGTGGCTGAGATTCCAGTGTTCCTGTACACAACTTTTGGTCAG
  1192. s rn3.chr3 9412966 96 + 170969371 ATGGCATTCCGTAGGACTGAGGGTATGTCCATGATCCAGGCTCTGGCCATGACTGTGGCTGAGATACCAGTGTTCCTGTACACGACTTTTGGTCAG
  1193. s canFam1.chr9 6452102 96 - 53642819 ATGGCATTCCGGAGGACTGAGGGCATGTCCATGATCCAGGCACTGGCCATGACGGTGGCCGAGATCCCTGTGTTCCTGTATACAACGTTTGGGCAG
  1194. s fr1.chrUn 120365676 96 + 349519338 ATGTCACTCAGACAAGCGGAAGGGATGTCCATTGCCCAGGCTTTGGCAATGACGGTAGCAGAGATCCCAGTGTTCCTTTATTCCACGTTTGGACAG
  1195. s danRer1.chrNA 88880074 96 + 390413307 ATGTCATTCAGAAGTGCAGAGGGCGTGTCCATCATGCAGGCCTTGGCCATGACTGTGGCTGAGATACCTGTGTTTCTCTATTCCACCTTTGGGCAG
  1196. a score=359580.0
  1197. s hg17.chr9 128937229 216 + 138429268 TCAGAGCTTGGCCCGG---GGGTGGCTCTGCAGCAGGGCACGCATGTCCAGGAGCGCCTTCTCCAGGTAATGCGCCAGGCGGGCGGCGTTGGTCTCCGCGCAGCTGTTGTAGGCCGACAGGGAGAAGTTGATGTGGGCCTCCATGGGGTTATAGCAGACACCGTAGCCGTCGGGGACCACGGGCCCGAAGAACATGACACAGTCTGTCTTGGCAGGGAC
  1198. s panTro1.chr11 113780157 216 + 123086034 TCAGAGCTTGGCCCGG---GGGTGGCTCTGCAGCAGGGCACGCATGTCCAGGAGCGCCTTCTCCAGGTAATGCGCCAGGCGGGCGGCGTTGGTCTCTGCGCAGCTGTTGTAGGCCGACAGGGAGAAGTTGATGTGGGCCTCCATGGGGTTATAGCAGACACCGTAGCCGTCGGGGACCACGGGCCCGAAGAACATGACACAGTCTGTCTTGGCAGGGAC
  1199. s mm5.chr2 30362600 216 + 181686250 TCAGAGCTTGGCCCTG---GGGTGGTTCTGGAGTAGGGTGCGCATGTCCAGCAGAGCTTTCTCCAAGTAGTGAGCCATGCGGGCAGCGTTGGTCTCAGCACAGCTGTTGTAGGCTGACACGGAGAAGTTGATATGGGCCTCCATGGGGTTGTAGCAGATGCCATAACCATCTGGGACCACAGGTCCGAAGAACATGACACAGTCTGTCTTGGCAGGGAC
  1200. s rn3.chr3 9448511 216 + 170969371 TCAGAGCTTGGCCCTG---GGGTGGTTCTGGAGTAAGGTGCGCATGTCCAGCAGAGCTTTCTCCAAGTAGTGAGCCATGCGGGCAGCGTTGGTCTCAGCACAGCTGTTGTAGGCTGACACGGAAAAGTTGATATGGGCCTCCATGGGATTGTAGCAGATGCCGTAACCGTCTGGGACCACAGGTCCGAAGGACATGACACAGTCTGTCTTGGCAGGGAC
  1201. s canFam1.chr9 6500360 216 - 53642819 TCACAGCTTGGCCCGA---GGGTGACTCTGCAGCAGAGCGCGCATGTCCAGGAGTGCCTTCTCCAGGTAGTGCGCCAGGCGGGCTGCATTGGTCTCGGCACAGCTGTTGTAGGCTGACACAGAGAAGTTGATGTGCGTCTCCATGGGGTTGTAGCACACGCCATAGCCGTCTGGGACCACGGGCCCAAAGAACATGACGCAATCTGTCTTGGCAGGGAC
  1202. s galGal2.chr17 5301443 216 - 10632206 TTACAGTTTGGATTTG---GGGGTAGATTGGAGCAAGCTTCTCATGTCTAGCAGTGCTTTCTCAAGATAATGTGCCATGCGAGCTGCATTTGTGTCAGCACAGCTGTTGAATGCTGAAATGGCAAAGTTGATGTGTTCATCCATAGGGTTGTAACAGATTCCATAGCCATCTGGAACCACGGGACCAAAACACATCACACAGTCTGTCTTTGCTGGGAC
  1203. s fr1.chrUn 47430687 219 + 349519338 TCACTGCTGGGCCGTGGCTGCGGCATCTTCCAGGAGAGCTCTCATGTCCAACAGGGCGCCCTCTACAGCCTGGGCGAAGCGAGCGGCGTTGGTCTCCTCACAGCTGTTGAAGGCCGTGATGGCCACGTTGATGTGCTCCTCCATGGGATTGTAACACACGCCGTAACCGTCTGGCACCATCGGACCAAAGCACATCACGCAGTCTGTCTTCGAGCCGAC
  1204. s danRer1.chr8 1065541 216 - 36410523 TTAAAGCTTGGCTCTG---GGTGTCTGCTCCAGCAGGGTCCTCATGTCCAGCAGAGCGTCCTCCAGACCCTGAGCCAGACGGACAGCATTTGTGTCCTGGCAGCTGTTGAACGCAGATACTGCAAAGTTAATGTGGGTATCCATGGGATTGTAGCATACGCCATAACCATCAGGCACCACCGGCCCAAAGCACATCACACAGTCAGTTTTAGCTGGCAC
  1205. a score=134850.0
  1206. s hg17.chrX 122745047 138 + 154824264 ATGACTTTTAACAGTTTTGAAGGATCTAAAAC----TTGTGTACCTGCAGACATCAATAAGGAAGAAGAATTTGTAGAAGAGTTTAATAGATTAAAAACTTTTGCTAATTTTCCAAGTGGTAGTCCTGTTTCAGCATCAACA-
  1207. s panTro1.chrX 126858618 138 + 160174553 ATGACTTTTAACAGTTTTGAAGGATCTAAAAC----TTGTGTACCTGCAGACATCAATAAGGAAGAAGAATTTGTAGAAGAGTTTAATAGATTAAAAACTTTTGCTAATTTTCCAAGTGGTAGTCCTGTTTCAGCATCAACA-
  1208. s mm5.chrX 34442683 138 + 160634946 ATGACTTTTAACAGTTTTGAAGGAACTAGAAC----TTTTGTACTTGCAGACACCAATAAGGATGAAGAATTTGTAGAAGAGTTTAATAGATTAAAAACATTTGCTAACTTCCCAAGTAGTAGTCCTGTTTCAGCATCAACA-
  1209. s rn3.chrX 157748736 138 - 160775580 ATGACTTTTAACAGTTTTGAAGGATCTAGAAC----TGTTGTACCTGCAGACACCAATAAGGATGAAGAATTTGTAGAAGAGTTTAATAGATTAAAAACATTTGCTAACTTCCCAAGCAGCAGTCCTGTTTCAGCATCAACA-
  1210. s canFam1.chrX 98422419 138 + 126913094 ATGACTTTTAACAGTTTTGAAGGAGCTAAAAC----TTGTGTACCTGCAGGCATCAATAAGGATGAAGAATTTGTAGAAGAGTTTAATAGATTAAAAACTTTTGCTAATTTTCCAAGTAGCAGTCCTGTTTCAGCATCAACG-
  1211. s galGal2.chr4 75226910 138 - 90634903 ATGACGTGTAATGGCCCAGATAGCTCTGAATC----TGGTGCCACTCCAGCCACTGACGGTGACCAGGAGTGGACACAGGAACACTACCGACTAGGAACCTTTGTGGAGTTTCCCCATGATTGTCCAGTTTCAGCATCAGCG-
  1212. s danRer1.chr14 14605069 142 - 34612130 TTTAGTTACTACAAATATGGCACACTCAACTCATAATGGCGAATTGGAATCTGACAATGTGGCAGCTGATTGGTCAGTCATGAAGAATCGGGTGAACTCTTTTCAACGTTTTCCATATTCTGAAGACATTTCAGCA-CAGCGG
  1213. a score=158991.0
  1214. s hg17.chrX 122745185 115 + 154824264 CTGGCACGAGCAGGGTTTCTTTATACTGGTGAAGGAGATACCGTGCGGTGCTTTAGTTGTCATGCAGCTGTAGATAGATGGCAATATGGAGACTCAGCAGTTGGAAGACACAGGA
  1215. s panTro1.chrX 126858756 115 + 160174553 CTGGCACGAGCAGGGTTTCTTTATACTGGTGAAGGAGATACCGTGCGGTGCTTTAGTTGTCATGCAGCTGTAGATAGATGGCAATATGGAGACTCAGCAGTTGGAAGACACAGGA
  1216. s mm5.chrX 34442821 115 + 160634946 TTGGCGCGAGCTGGGTTTCTTTATACCGGTGAAGGAGACACCGTGCAATGTTTCAGTTGTCATGCGGCAATAGATAGATGGCAGTATGGAGACTCAGCTGTTGGAAGACACAGGA
  1217. s rn3.chrX 157748874 115 - 160775580 TTGGCGCGAGCGGGGTTTCTCTACACTGGTGAAGGAGACACCGTGCAGTGTTTCAGTTGTCACGCGGCAGTAGATAGATGGCAGTATGGAGACTCAGCTGTTGGAAGACACAGGA
  1218. s canFam1.chrX 98422557 115 + 126913094 TTAGCACGAGCTGGTTTTCTGTATACTGGTGAAGGAGATACTGTGCGGTGCTTTAGTTGTCATGCATCAATAGATAGATGGCAATATGGAGACTCAGCAGTTGGAAGACACAGGA
  1219. s galGal2.chr4 75227048 115 - 90634903 CTAGCTCGAGCTGGCTTTGTTTATACTGGAGAAGGTGATAAAGTCAAGTGCTTCAGTTGCCATGTAACTGTTGAAGGATGGGAGCCTGGGGATTCTGCAATTGACAGACACAAAA
  1220. s fr1.chrUn 143073633 115 - 349519338 CTGGCCCGGGCCGGCTGGTTCTACACGGGGGTGGGCGACCGCGTGCAGTGTTTCAAGTGCAACGTGACAGCCGAGGGCTGGCAGGCTGGAGACTGTCCCACCGAAAAACACAGGC
  1221. s danRer1.chr14 14605211 115 - 34612130 CTGGCCCGAGCGGGCTTTTACTTCACAGGCGAGGGGGACAGGGTGCAATGTTTCAGCTGCAGTGCCACTGTGCAGAACTGGAACAGAGGTGACACCCCATTGGAGAGACATCAAC
  1222. a score=509291.0
  1223. s hg17.chrX 122745300 448 + 154824264 AAGTATCCCCAAATTGCAGATTTATCAACGGCT---TTTATCTTGAAAATAGTGCCACGCAGTCTACAAATTCTGGTATCCAGAATGGTCAGTACAAAGTTGAAAACTATCTGGGAAGCAGAGAT---------CATTTTGCCTTAGACAGGCCATCTGAGACACATGCAGACTATCTTTTGAGAACTGGGCAGGTTGTAGATATATCAGACACCATATACCCGAGGAACCCTGCCATGTATAGTGAAGAAGCTAGATTAAAGTCCTTTCAGAACTGGCCAGACTATGCTCACCTAACCCCAAGAGAGTTAGCAAGTGCTGGACTCTACTACACAGGTATTGGTGACCAAGTGCAGTGCTTTTGTTGTGGTGGAAAACTGAAAAATTGGGAACCTTGTGATCGTGCCTGGTCAGAACACAGGCGACACTTTCCTAATTGCTTCTTTGTTTTGGGCCGGAA
  1224. s panTro1.chrX 126858871 448 + 160174553 AAGTATCCCCAAATTGCAGATTTATCAACGGCT---TTTATCTAGAAAATAGTGCCACGCAGTCTACAAATTCTGGTATCCAGAATGGTCAGTACAAAGTTGAAAACTATCTGGGAAGCAGAAAT---------CATTTTGCCTTAGACAGGCCATCTGAGACACATGCAGACTATCTTTTGAGAACTGGGCAGGTTGTAGATATATCAGACACCATATACCCGAGGAACCCTGCCATGTATAGTGAAGAAGCTAGATTAAAGTCCTTTCAGAACTGGCCAGACTATGCTCACCTAACCCCAAGAGAGTTAGCAAGTGCTGGACTCTACTACACAGGTATTGGTGACCAAGTGCAGTGCTTTTGTTGTGGTGGAAAACTGAAAAATTGGGAACCTTGTGATCGTGCCTGGTCAGAACACAGGCGACACTTTCCTAATTGCTTCTTTGTTTTGGGCCGGAA
  1225. s mm5.chrX 34442936 448 + 160634946 GAATATCCCCAAATTGCAGATTTATCAATGGTT---TTTATTTTGAAAATGGTGCTGCACAGTCTACAAATCCTGGTATCCAAAATGGCCAGTACAAATCTGAAAACTGTGTGGGAAATAGAAAT---------CCTTTTGCCCCTGACAGGCCACCTGAGACTCATGCTGATTATCTCTTGAGAACTGGACAGGTTGTAGATATTTCAGACACCATATACCCGAGGAACCCTGCCATGTGTAGTGAAGAAGCCAGATTGAAGTCATTTCAGAACTGGCCGGACTATGCTCATTTAACCCCCAGAGAGTTAGCTAGTGCTGGCCTCTACTACACAGGGGCTGATGATCAAGTGCAATGCTTTTGTTGTGGGGGAAAACTGAAAAATTGGGAACCCTGTGATCGTGCCTGGTCAGAACACAGGAGACACTTTCCCAATTGCTTTTTTGTTTTGGGCCGGAA
  1226. s rn3.chrX 157748989 448 - 160775580 GAATATCCCCAAATTGCAGATTTATCAATGGTT---TTTATTTTGAAAACGGTGCCACACAGTCTACATCTCCTGGCATCCAAAATGGCCAGTACAAATCTGAAAACTGTGTGGGAAACAGAAAT---------CATTTTGCTCTTGACAGGCCGTCGGAGACTCATGCAGATTATCTCCTGAGAACTGGACAGGTTGTAGATATTTCAGATACCATATACCCGAGGAACCCGGCCATGTGTAGTGAAGAAGCCAGACTGAAGACGTTTCAGAACTGGCCAGACTATGCCCATTTAAGCCCCAGAGAGTTAGCTAGTGCTGGACTCTACTACACGGGGATTGATGATCAAGTGCAATGCTTTTGTTGTGGTGGAAAACTGAAAAATTGGGAACCCTGTGACCGTGCCTGGTCAGAGCACAGGAGACACTTTCCCAACTGCTTCTTCGTTTTGGGCCGGAA
  1227. s canFam1.chrX 98422672 448 + 126913094 AAGTATCCCCAAATTGCAGATTTATCAATGGCT---TTTATTTTGAAAACACTGCTGCACAACCTACAAATCCAGGTATCCAAAATGGTCAATATAATGCAGAAAACTATCTGAGAAACAGAGAT---------CATTTTGTTTTAGACAGACCATCTGAGACTCATGCAGATTATCTTTTGAGAACTGGACAGGTCGTAGATATATCAGACACCACATACCCGGAGAACCCTGCCATGTATAGTGAAGAAGCTAGATTAAACTCATTTCAGAACTGGCCAGACTATGTCCACTTGACCCCAAGAGAGTTAGCTAGTGCTGGATTCTACTACACAGGTATTGACGATCAAGTGCAGTGCTTTTGTTGTGGTGGAAAACTGAAAAATTGGGAACCGTGTGATAATGCATGGTCAGAACACAGGCGACACTTTCCTAATTGCTTCTTTGTTCTGGGCCGGAA
  1228. s galGal2.chr4 75227163 442 - 90634903 ACCTTTCCCCAGATTGCAGATTTATTACTGGGTCTGCTTTTTTGGAAAATAACG------------TACATCCTCTTGTGCAGAGCCACCAGCATAGAACTGAAAAT------GGCTCCAGCAATTTGGCCCTCCCCTCTGCTCTGGAGGACTTGTCTGATGTGGAGGCAGATTACCTGTTGAGAACCAGGCAGGTTGTGGACATGTCCGATACTTTGTATCCTAAAAACCCTGCTATGTGCAGTGAAGAAGCCAGGCTGAAGTCCTTTCACAATTGGCCCCCCTATGGCCTATTGACGCCAAAGGAATTAGCTAGTGCAGGACTCTACTATACAGGTGTTGGTGATCAAGTTGCATGTTTCTGTTGCGGTGGAAAACTGAAAAACTGGGAACCTGGTGATCGAGCTTGGTCTGAGCACAAGAGGCATTTTCCCAAATGCTTTTTTGTCCTGGGTCGGGA
  1229. s fr1.chrUn 74286897 397 + 349519338 AGGTTTCTCCATTTTGCAAATTTCTCAGTTGTA---TTTATC---GAACCAGTTCCAATC------CGATTCCTGGCA-CCTCACTGACGA--ACGGCTCTGCCTACAATG-AAGAAGCAGAAGA---------TAT--------------------------------GGAATATCGTCTGAGAACAGGACAGGTGGTCGAT------GAGTCCATTTATCCAGTGGTCCCTCATATGAGGAGTGAAGAAAGCCGGCTTCACACCTTTTCTACGTGGCCCTTGACTGCACCAGTGAGCCCGTGCGATCTGGCCCAAGCTGGCCTTTACTACTTAGGGCAGTGTGACCAGGTTCAGTGTTTCTGCTGTGGTGGCACACTGGCTGACTGGGAAATCGGGGATTCCGCCTGGGCAGAACACAGCAAACATTTCCCTTTCTGCTTTTTCATCCTGGGGCACGA
  1230. s danRer1.chr14 14605326 382 - 34612130 TGGCATCTCCGGACTGCAGGTTCCTCAGCTGTG---CTCATGGTATGAGAAACT------------CTAATTCG---ATCCAGAGTCCTGATTACGATG-------------AAGAGGCCGAGAA---------TAG--------------------------------AGAGTTCCTCCTCCGCACGGGAGAGGTGGTGGAC------GAGTCCATGTATCCTGTTGTACCGCACATGAAGAGTGAAGAAGCGCGACTGAGTACTTTCAACAACTGGCCAGCAGACTCTCCAGTTCGGCCTGAAGACCTGGCAGAAGCAGGGATGTATTACATTGGGATAGACGACAATGTGCAGTGCTTCTGTTGCGGAGGGGGTCTGAGTGGATGGGAGCAAGGCGACGATCCTTGGAGTGAACATGCGAAGTACTACTCAAACTGCTTCTTCTTCTTGGGCCACAA
  1231. a score=18792.0
  1232. s hg17.chrX 122745748 22 + 154824264 TCTT---AATATTCGAAGTGAATCT
  1233. s panTro1.chrX 126859319 22 + 160174553 TCTT---AATATTCGAAGTGAATCT
  1234. s mm5.chrX 34443384 22 + 160634946 CGTT---AATGTTCGAAGTGAATCT
  1235. s rn3.chrX 157749437 22 - 160775580 TGTT---AATGTTCGAAGTGAGTCT
  1236. s canFam1.chrX 98423120 22 + 126913094 TGTT---AATATTCGAAGTGAATCT
  1237. s galGal2.chr4 75227605 25 - 90634903 CGTTGGAAATGTTTCAACTGATTCT
  1238. s fr1.chrUn 74287294 16 + 349519338 TGTTGGCAATAT---------ACCT
  1239. a score=0.0
  1240. s hg17.chrX 122745748 27 + 154824264 TCTTAATATTCGAAGTGAATCTGATGC
  1241. a score=-3673.0
  1242. s hg17.chrX 122745770 5 + 154824264 GATGC
  1243. s panTro1.chrX 126859341 5 + 160174553 GATGC
  1244. s mm5.chrX 34443406 2 + 160634946 GG---
  1245. s rn3.chrX 157749459 2 - 160775580 GG---
  1246. s canFam1.chrX 98423142 5 + 126913094 GATGT
  1247. s galGal2.chr4 75227630 5 - 90634903 ATCTG
  1248. a score=43762.0
  1249. s hg17.chrX 122745775 54 + 154824264 TGTGAGTTCTGATAGGAATTTCCCAAATTCAACAAAT--CTTCCAAGAA-----ATCCATC
  1250. s panTro1.chrX 126859346 54 + 160174553 TGTGAGTTCTGATAGGAATTTCCCAAATTCAACAAAT--CTTCCAAGAA-----ATCCATC
  1251. s mm5.chrX 34443408 54 + 160634946 TGTGAGTTCTGATAGGAATTTCCCAAATTCAACAAAC--TCTCCAAGAA-----ATCCAGC
  1252. s rn3.chrX 157749461 54 - 160775580 TGTGAGTTCAGATAGGAATTTCCCAAATTCAACAAAT--TCTCCAAGAA-----ATCCAGC
  1253. s canFam1.chrX 98423147 54 + 126913094 TGCGAGTACTGATAGGAACGTCCCAAATTCAACAAGT--ATTCCAGAAA-----ATCCAGC
  1254. s galGal2.chr4 75227635 54 - 90634903 TGCTGAGCTTGGGAGAAGCTGTCTAAA--CAACGAACAGCATCCAAGGA-----ATCCATC
  1255. s danRer1.chr14 14605708 50 - 34612130 TGTGGGC---------AACGTCCCCCTGACAACACCT--AGGCCAAGGGCTAATGTCCACC
  1256. a score=105732.0
  1257. s hg17.chrX 122745829 95 + 154824264 CATGGCAGATTATGAAGCACGGATCTTTACTTTTG-GGACATGGATATACTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG
  1258. s panTro1.chrX 126859400 95 + 160174553 CATGGCAGATTATGAAGCACGGATCTTTACTTTTG-GGACATGGATATACTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG
  1259. s mm5.chrX 34443462 95 + 160634946 CATGGCAGAATATGAAGCACGGATCGTTACTTTTG-GAACATGGACATCCTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG
  1260. s rn3.chrX 157749515 95 - 160775580 CATGGCAGAATATGACGCACGGATCGTTACTTTTG-GAACATGGCTATACTCAGTTAACAAGGAGCAGCTTGCAAGAGCTGGATTTTATGCTTTAG
  1261. s canFam1.chrX 98423201 95 + 126913094 CATGGCAGATTATGAAGCACGGATCGTTACTTTTC-GGATGTGGATGTGTTCAATTAACAAGGAGCAACTTGCAAGAGCTGGATTTTATTCTTTAG
  1262. s galGal2.chr4 75227689 95 - 90634903 CATGGCAGAATATGAGAGGCGGATACAAACATTTT-TAGCTTGGATATACCCTGTTAACAAGGAACATCTTGCTGAAGCAGGGTTCTACAGCACAG
  1263. s fr1.chrUn 74287369 95 + 349519338 CATGGGGACATTTGAGGAAAGGCTGAGGAGTTTTGCTGGTGTCAAC-CACCCTCTAAACATAGAGAGGCTTGCGAGAGCTGGCTTCTACAGCAATG
  1264. s danRer1.chr14 14605759 95 - 34612130 TACAGACACTTTTGAGGGGCGTCTTGATAGCTTCA-AAGGCAGACAGCATCCCATTGACCCTGAGAGATTGGCCAGAGCTGGTTTCTACAGCACAG
  1265. a score=-8579.0
  1266. s hg17.chrX 152648964 14 + 154824264 CTATTCTAGGGCCA
  1267. s panTro1.chrX 157964696 14 + 160174553 CTATTCTAGGGCCA
  1268. s mm5.chrX 65413418 14 + 160634946 CTATTCTAGGGCTA
  1269. s rn3.chrX 159861438 14 + 160775580 CTATTCTAGGGCTA
  1270. s canFam1.chrX 124765428 14 + 126913094 CTACTCTAGGGCCC
  1271. s galGal2.chr26 3679526 14 - 4255270 CTACGCTAATGAGT
  1272. s fr1.chrUn 230132755 14 - 349519338 TTAGACGAATGAGT
  1273. s danRer1.chr10 12185566 12 + 25436222 -TGGGCGGAGGCA-
  1274. a score=283274.0
  1275. s hg17.chrX 152648978 218 + 154824264 CGGCAGGGTTGATGGGGGAAGTGGCCCCTGAGCTGT-CATTGCCCCCTGCCGCCTCCTTCTCCTTCTTGCCACTGTACTGGCCAATGAACGAACCATCCTCGTTGAACTGAACATCCA---CGCTGCCCCCATAATCGGCCAGGCTGTCGTCACTGCCCAGGGGCTTGATGTCCCCGTTGAGCGATGGCTGGCT-GCTGCCAAAGGCCTTCTCCTCGTTGTCA
  1276. s panTro1.chrX 157964710 218 + 160174553 CGGCAGGGTTGATGGGGGAGGTGGCCCCTGAGCTGT-CATTGCCCCCTGCCGCCTCCTTCTCCTTCTTGCCACTGTACTGGCCAATGAACGAACCATCCTCGTTGAACTGAACATCCA---CGCTGCCCCCATAATCGGCCAGGCTGTCGTCACTGCCCAGGGGCTTGATGTCCCCGTTGAGCGATGGCTGGCT-GCTGCCAAAGGCCTTCTCCTCGTTGTCA
  1277. s mm5.chrX 65413432 218 + 160634946 CTGCAGGATTGATAGGAGAGGTAGCCCCTGAACTGT-CATTGCCTCCTGCTGCCTCCTTCTCTTTCTTGCCACTGTACTGGCCGATGAAAGAGCCATCCTCATTGAACTGGACGTCCA---CACTGCCCCCATAATCAGCCAGGCTGTCATCACTGCCTAGGGGTTTGATGTCTCCGTTGAGAGATGGCTGGCT-GCTGCCAAAGGCCTTCTCTTCATTGTCA
  1278. s rn3.chrX 159861452 218 + 160775580 CTGCAGGATTGATAGGAGAGGTAGCCCCTGAGCTGT-CATTGCCTCCCGCTGCCTCCTTCTCTTTTTTGCCACTGTATTGGCCGATGAAAGAGCCATCCTCATTGAACTGGACATCCA---CACTGCCCCCATAATCAGCCAGACTGTCATCACTGCCTAGGGGTTTGATGTCTCCATTGAGAGATGGCTGGCT-GCTGCCGAAGGCCTTCTCTTCATTGTCA
  1279. s canFam1.chrX 124765442 218 + 126913094 CGGCAGGGTTGATGGGGGAGGCGGCCCCTGAGCTGT-CGTTGCCGCCTGCTGCCTCCTTCTCCTTCTTGCCGCTGTACTGGCCGATGAAGGAGCCGTCCTCGTTGAACTGCACGTCCA---CGCTGCCCCCGTAGTCGGCCAGGCTGTCGTCACTGCCCAGGGGCTTGATGTCCCCATTGAGGGACGGCTGGCT-GCTGCCAAAGGCCTTCTCCTCGTTGTCA
  1280. s galGal2.chr26 3679540 218 - 4255270 AGATAGCATTGACTGGGGACGTGGCTTCTGAGCTCT-CGTTGCCTTCCGTTTCCTCCTTGTCCTTTTTCACTGTGTACTGGCCAATGAAGGAGCCGTCCTCGTTGAACTGCCCTTCCC---CACCCTCTCCGTAGTCCACCAAGCTGTCGTCACTCTCCTGTTGCTTTATCGTGCCATCCAGGGAGGTCTGACT-GTTGGGCAGTGGTTTGTTGTCTTCATCG
  1281. s fr1.chrUn 329627114 209 - 349519338 CGGCAGGGTTGAGGGGGGAGTTGTCCGGTACGCCGTGGAACGGCTCCGGCC-------CCTCGCTGTGGCGGCTGAACTGGCTGGCCAGGGACTCGTCCATGTTGAGCTCCGTGGTTACGGCGCTGCTGCCGTTGAAGTCCAGGTTGTCCTCGCTGCACA---GCTTGCTGTCCTCGCCCAGCGAAGGCTGGCTGGCTGT----GCGCTTCTCTTCGAGGTCA
  1282. s danRer1.chr10 12185578 200 + 25436222 TGTTGGGGTTGACCGGCGACACGGCGCCAGAGCTGT-CGTGCCCGCGTG---------GATCCCTTCGACCGCTGTACTGCCCGATGAAGGAGCCGTCCTCATTGAACTGGATGTCCA---CGCTGTCCCCGTAATCCGCCAGACTGTCGTTGCTGCT---GCGCTTGCTCTCGCACCC---CGACGGCTGGCT-GATGG---AGCACTTCTCCATATCACTG
  1283. a score=102002.0
  1284. s hg17.chrX 152691446 25 + 154824264 ATGCTCATGGCGTCCACCACTTCCG
  1285. s mm5.chrX 65450627 25 + 160634946 ATGATCCTGGTGTCTACCACGTCTG
  1286. s rn3.chrX 159897295 25 + 160775580 ATGCTCCTGGTGTCTACCGTGTCCG
  1287. s canFam1.chrX 124808548 25 + 126913094 ATGCTCCTGGCATCCACCACCTCGG
  1288. a score=45779.0
  1289. s hg17.chrX 152694029 80 + 154824264 TCAGTGTG---GCTTGGGGGTCGTGTCTAGGCCCTGGGGGTGGGAAGCTGAGGGTGAGGCTGGGGCCCCAGGGCCCCGGGAGA
  1290. s panTro1.chrX 158011192 80 + 160174553 TCAGTGTG---GCTTGGGGGTCGTGTCTAGGCCCTGGGGGTGGGAAGCTGAGGGTGAGGCTGGGGCCCCAGGGCCCCGGGAGA
  1291. s mm5.chrX 65453119 80 + 160634946 TCAGACTG---GCTTGCGAGTTGAATCTGGACCCTGGGGATGGGAGGTTGAGGGGGAAATTGGAGCCCCAGGTCCCCGGGAGA
  1292. s rn3.chrX 159899770 80 + 160775580 TCAGACTG---GCTTGCGAGTTGAATCTGGACCCTGGGGATGGGAAACTGAGGGGGAAACTGGAGCCCCAGGTCCCCGGGAGA
  1293. s canFam1.chrX 124811065 77 + 126913094 TCAGT------GCTTAAGTGGAGAGTCCAGGCCCTGGGGATGGGACGCCGAGGGGGACGCCGGGGCCCCGGAGCCGCGGGAGA
  1294. s galGal2.chr26 3294210 66 - 4255270 TCAGGGCG---GCT--------------GCGCCATGGAACTGAAATGCACACCGTGCCCTGGCACCCCCATCACCCCTGGGGA
  1295. s danRer1.chrNA 128898465 70 + 390413307 CCAGACTGCAAGCACAGGGAGAGTGTCTGGCCCCCAGGGC-----AGCT--------CGCTGGGGCCAGAGAGCCTCTGGTGA
  1296. a score=18883.0
  1297. s hg17.chrX 152694109 35 + 154824264 AGCCTTTGTTCCTGCCCAGGCGGCTGCTGGGCGGG
  1298. s panTro1.chrX 158011272 35 + 160174553 AGCCTTTGTTCCTGCCCAGGCGGCTGCTGGGCGGG
  1299. s mm5.chrX 65453199 35 + 160634946 AGACTTTGTTTTTGCTGATGCTGCTGCAGGCCAGG
  1300. s rn3.chrX 159899850 35 + 160775580 AGACTTTGTTTTTGCTGAAGCTGCTGCAGGCCAGG
  1301. s canFam1.chrX 124811142 35 + 126913094 AGCCTTTGCTCCTACCCAGGCGGCCGGAGGCCGGA
  1302. s galGal2.chr26 3294276 30 - 4255270 CATC----CCCCTGTCAGCACTGCT-CGGGGCGGG
  1303. a score=7409.0
  1304. s hg17.chrX 152694144 26 + 154824264 GCCTTTGGGCTTCGGGGCCCAGGACT
  1305. s panTro1.chrX 158011307 26 + 160174553 GCCTTTGGGCTTCGGGGCCCAGGACT
  1306. s mm5.chrX 65453234 20 + 160634946 GGCGTCAGAGTT------CCTAGACT
  1307. s rn3.chrX 159899885 26 + 160775580 GGCTTCAGGTTTCGAGTTCCTAGACT
  1308. s canFam1.chrX 124811177 26 + 126913094 GGCTTCAGGCTGCAgggcccggggcc
  1309. s galGal2.chrUn 50576950 22 + 165033910 -GTTCTGAG---CGAGGAACAGCACC
  1310. a score=24632.0
  1311. s hg17.chrX 152694170 31 + 154824264 GGGAGAGGTGGTAGATGCTGGCCCAAGGCCC
  1312. s panTro1.chrX 158011333 31 + 160174553 GGGAGAGGTGGTAGATGCTGGCCCAAGGCCC
  1313. s mm5.chrX 65453254 31 + 160634946 CGGGGAGGCTGTAGATGCTAACCCATGGCCC
  1314. s rn3.chrX 159899911 31 + 160775580 GGGGGAGGCTGTAGATGCTAGCCCATGGCCC
  1315. s canFam1.chrX 124811203 31 + 126913094 gggggagccggtggacgcgggccccgcgccc
  1316. s galGal2.chrUn 50576972 31 + 165033910 GGGAGAGGCGGCAGCGGCTGCCCCCGAGCTC
  1317. s fr1.chrUn 329777075 24 - 349519338 GGACGAGGAGGTGGAGGAAGGATC-------
  1318. a score=47489.0
  1319. s hg17.chrX 152694201 49 + 154824264 TGGCGGACAGAGGTCTTTCCCAAGAGCTCCTTAAACACAGAGTCCATGT
  1320. s panTro1.chrX 158011364 49 + 160174553 TGGCGGACAGAGGTCTTTCCCAAGAGCTCCTTAAACACAGAGTCCATGT
  1321. s mm5.chrX 65453285 49 + 160634946 TGGCGGACAGCAGTCTTTCCCAAGAGCTCCTTAAACACAGAATTCATGT
  1322. s rn3.chrX 159899942 49 + 160775580 TGGCGGACAGCAGCCTTTCCCAAGAGCTCCTTAAACACAGAATCCATGT
  1323. s canFam1.chrX 124811234 49 + 126913094 tggcgggcggAGGTCTTTCCCAGGAGCTCCTTAAACACGGAATCCATGG
  1324. s fr1.chrUn 329777109 37 - 349519338 TGGCGTGTG------------AGGAGCTCCTTAAAAACAGAGTCCATGT
  1325. a score=175616.0
  1326. s hg17.chrX 152694250 13 + 154824264 TCTGTGCCACAGC
  1327. s panTro1.chrX 158011413 13 + 160174553 TCTGTGCCACAGC
  1328. s mm5.chrX 65453334 13 + 160634946 TCTGTGCCACAGC
  1329. s rn3.chrX 159899991 13 + 160775580 TCTGCGCCACAGC
  1330. s canFam1.chrX 124811283 13 + 126913094 TCTGTGCCACAGC